Wall clock time and date at job start Mon Mar 30 2020 20:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 113.99852 * 2 1 4 4 H 1.09001 * 109.79534 * 29.49881 * 3 2 1 5 5 C 1.53014 * 109.63371 * 269.00154 * 3 2 1 6 6 C 1.50090 * 110.13905 * 190.62326 * 5 3 2 7 7 C 1.31089 * 123.85312 * 17.15111 * 6 5 3 8 8 C 1.47835 * 118.07142 * 179.59327 * 7 6 5 9 9 C 1.39889 * 120.01010 * 244.72716 * 8 7 6 10 10 C 1.38569 * 120.32933 * 179.74562 * 9 8 7 11 11 F 1.35104 * 119.82362 * 180.27898 * 10 9 8 12 12 C 1.37960 * 120.35290 * 0.55226 * 10 9 8 13 13 C 1.40730 * 120.00676 * 359.70561 * 12 10 9 14 14 C 1.41431 * 120.16217 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00422 * 24.47894 * 14 13 12 16 16 C 1.39923 * 119.99906 * 204.48042 * 14 13 12 17 17 N 1.30837 * 119.99743 * 17.90150 * 16 14 13 18 18 Si 1.86794 * 120.00237 * 197.90033 * 16 14 13 19 19 H 1.48505 * 109.46888 * 90.00001 * 18 16 14 20 20 H 1.48497 * 109.47428 * 209.99731 * 18 16 14 21 21 H 1.48497 * 109.47142 * 330.00288 * 18 16 14 22 22 C 1.38942 * 120.00883 * 65.00585 * 8 7 6 23 23 C 1.50087 * 123.85287 * 359.57919 * 7 6 5 24 24 C 1.53012 * 110.14085 * 17.15487 * 23 7 6 25 25 H 1.08996 * 109.47588 * 300.00407 * 1 2 3 26 26 H 1.09005 * 109.46914 * 60.00064 * 1 2 3 27 27 H 1.08997 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.36394 * 70.41464 * 5 3 2 29 29 H 1.09000 * 109.35403 * 310.82169 * 5 3 2 30 30 H 1.07993 * 118.07100 * 197.44221 * 6 5 3 31 31 H 1.07995 * 119.82945 * 0.02566 * 9 8 7 32 32 H 1.07997 * 120.00049 * 179.71779 * 12 10 9 33 33 H 0.97003 * 120.00055 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.17244 * 359.97438 * 22 8 7 35 35 H 1.08999 * 109.36042 * 137.36255 * 23 7 6 36 36 H 1.09000 * 109.35727 * 257.08524 * 23 7 6 37 37 H 1.08995 * 109.62904 * 70.02471 * 24 23 7 38 38 H 1.09003 * 109.63196 * 190.62334 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 2.0058 0.5050 5 6 2.2422 1.7650 -1.4410 6 6 3.0810 3.0095 -1.4578 7 6 3.8001 3.4193 -0.4412 8 6 4.5867 4.6607 -0.6010 9 6 5.9842 4.6140 -0.5577 10 6 6.7282 5.7728 -0.7120 11 9 8.0774 5.7150 -0.6741 12 6 6.0983 6.9860 -0.8984 13 6 4.6931 7.0506 -0.9390 14 6 4.0440 8.2924 -1.1305 15 1 4.5608 9.1012 -1.6258 16 6 2.7323 8.4734 -0.6782 17 7 2.2281 7.6559 0.2102 18 14 1.7011 9.8819 -1.3428 19 1 0.9594 9.4274 -2.5464 20 1 0.7359 10.3221 -0.3036 21 1 2.5880 11.0159 -1.7069 22 6 3.9381 5.8751 -0.7884 23 6 3.8715 2.7023 0.8754 24 6 3.3626 1.2674 0.7222 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2819 1.9701 -1.9140 29 1 2.7539 0.9769 -1.9934 30 1 3.0890 3.6048 -2.3588 31 1 6.4857 3.6694 -0.4078 32 1 6.6837 7.8863 -1.0135 33 1 1.3186 7.7810 0.5235 34 1 2.8593 5.9153 -0.8182 35 1 4.9050 2.6842 1.2214 36 1 3.2551 3.2262 1.6060 37 1 4.0748 0.6870 0.1359 38 1 3.2396 0.8155 1.7065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243813693.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:50 Heat of formation + Delta-G solvation = -94.060527 kcal Electronic energy + Delta-G solvation = -20856.611925 eV Core-core repulsion = 17576.880419 eV Total energy + Delta-G solvation = -3279.731506 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.127 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.62982 -40.45644 -39.21006 -37.35114 -35.50668 -32.90656 -31.82161 -31.12369 -29.32238 -27.38660 -27.24808 -24.18571 -23.65746 -22.86736 -21.98777 -19.66115 -18.67160 -17.79975 -17.37698 -16.99826 -16.65337 -16.46424 -16.32520 -16.20053 -15.85499 -15.37724 -14.66681 -14.61384 -14.26275 -14.13919 -13.97986 -13.52015 -13.28827 -13.19444 -12.91279 -12.82140 -12.74263 -12.34241 -12.26970 -12.09256 -11.91372 -11.77560 -11.57093 -11.22593 -11.05963 -10.44307 -9.91739 -9.38753 -9.10262 -8.72973 -6.48256 0.63103 0.82081 1.33997 1.38650 1.51629 1.51701 2.17889 2.57974 2.79636 3.49780 3.61238 3.79471 3.86673 4.01846 4.26345 4.30706 4.39338 4.43856 4.53161 4.55690 4.60399 4.68827 4.75780 4.88587 4.89683 4.91185 4.94354 5.02379 5.07879 5.11668 5.21456 5.27403 5.52800 5.62794 5.74360 5.90495 5.97060 6.07226 6.22529 6.28442 6.54989 6.80950 6.84074 8.23586 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.005652 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.893178 B = 4952.404066 C = 6604.502076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.399 6.399 3 C 0.090 3.910 4 H 0.063 0.937 5 C -0.096 4.096 6 C -0.152 4.152 7 C -0.076 4.076 8 C -0.020 4.020 9 C -0.264 4.264 10 C 0.109 3.891 11 F -0.162 7.162 12 C -0.284 4.284 13 C 0.104 3.896 14 C -0.491 4.491 15 H 0.079 0.921 16 C 0.041 3.959 17 N -0.811 5.811 18 Si 0.984 3.016 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.172 4.172 23 C -0.071 4.071 24 C -0.105 4.105 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.293 0.707 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -10.378 0.179 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.033 3.967 4 H 0.081 0.919 5 C -0.133 4.133 6 C -0.171 4.171 7 C -0.076 4.076 8 C -0.020 4.020 9 C -0.283 4.283 10 C 0.090 3.910 11 F -0.141 7.141 12 C -0.304 4.304 13 C 0.101 3.899 14 C -0.520 4.520 15 H 0.098 0.902 16 C -0.176 4.176 17 N -0.436 5.436 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.183 1.183 22 C -0.191 4.191 23 C -0.108 4.108 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.132 0.868 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.275 -10.587 0.341 12.311 hybrid contribution -0.031 1.280 -0.273 1.309 sum -6.306 -9.307 0.069 11.242 Atomic orbital electron populations 1.22979 0.79893 1.03837 1.00611 1.87862 1.21117 1.27724 1.95148 1.22150 0.95147 0.84271 0.95179 0.91897 1.20823 0.99543 0.95002 0.97918 1.22244 0.98440 0.98337 0.98044 1.19786 0.97300 0.93922 0.96635 1.18799 0.91959 0.93282 0.97993 1.20529 0.93416 0.96157 1.18238 1.17546 0.75395 0.95305 1.02748 1.91341 1.30774 1.97480 1.94527 1.21076 0.95514 0.95438 1.18420 1.17660 0.90332 0.94181 0.87738 1.19863 0.98917 0.98464 1.34707 0.90246 1.26754 0.98409 1.00112 0.92353 1.69855 1.16723 1.36284 1.20699 0.85169 0.77759 0.77629 0.79037 1.18463 1.18949 1.18291 1.21491 0.99459 0.90635 1.07538 1.20334 1.02331 0.94437 0.93740 1.21602 0.95425 0.95594 1.01606 0.93506 0.93576 0.88027 0.90179 0.89489 0.88806 0.86019 0.87815 0.89645 0.86817 0.90244 0.90926 0.90868 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.83 113.37 1.23 1.62 16 2 O -0.40 -9.51 10.36 -148.98 -1.54 -11.05 16 3 C 0.09 2.27 2.65 30.72 0.08 2.35 16 4 H 0.06 1.61 7.78 -2.39 -0.02 1.59 16 5 C -0.10 -2.51 5.75 29.66 0.17 -2.34 16 6 C -0.15 -5.10 9.35 25.37 0.24 -4.86 16 7 C -0.08 -2.81 5.24 -17.64 -0.09 -2.90 16 8 C -0.02 -0.90 5.10 -20.17 -0.10 -1.00 16 9 C -0.26 -11.89 9.57 22.75 0.22 -11.67 16 10 C 0.11 5.25 7.27 22.28 0.16 5.41 16 11 F -0.16 -7.33 17.26 44.97 0.78 -6.56 16 12 C -0.28 -14.62 9.76 22.81 0.22 -14.40 16 13 C 0.10 5.56 5.57 -21.33 -0.12 5.44 16 14 C -0.49 -25.87 9.05 23.47 0.21 -25.66 16 15 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 16 C 0.04 1.97 5.14 85.25 0.44 2.40 16 17 N -0.81 -40.29 10.96 21.82 0.24 -40.06 16 18 Si 0.98 36.45 29.59 68.60 2.03 38.48 16 19 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 C -0.17 -8.76 8.30 22.99 0.19 -8.57 16 23 C -0.07 -2.19 5.78 29.66 0.17 -2.02 16 24 C -0.10 -2.64 5.66 30.72 0.17 -2.46 16 25 H 0.05 0.75 8.09 -2.39 -0.02 0.74 16 26 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 3.38 7.94 -2.91 -0.02 3.36 16 31 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 32 H 0.10 5.15 8.06 -2.91 -0.02 5.12 16 33 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 34 H 0.11 5.99 6.16 -2.91 -0.02 5.97 16 35 H 0.08 2.41 7.97 -2.39 -0.02 2.39 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -57.18 321.75 5.74 -51.44 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 1.05 Total: 26.40 kcal Atomic # 6 Polarization: -61.85 SS G_CDS: 3.19 Total: -58.66 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.24 Total: -40.06 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -1.54 Total: -11.05 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.78 Total: -6.56 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -57.18 5.74 -51.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243813693.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.618 kcal (2) G-P(sol) polarization free energy of solvation -57.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds