Wall clock time and date at job start Mon Mar 30 2020 20:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35011 * 120.44158 * 2 1 4 4 O 1.21284 * 120.07318 * 1.68878 * 3 2 1 5 5 C 1.50753 * 119.86135 * 181.66861 * 3 2 1 6 6 O 1.43051 * 109.54517 * 328.78974 * 5 3 2 7 7 C 1.35842 * 116.64273 * 46.04242 * 6 5 3 8 8 C 1.38504 * 120.88676 * 147.36667 * 7 6 5 9 9 C 1.38887 * 118.24758 * 180.15943 * 8 7 6 10 10 C 1.50706 * 120.33356 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47238 * 89.99881 * 10 9 8 12 12 C 1.52996 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99714 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99774 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99585 * 17 15 13 21 21 C 1.38087 * 119.33019 * 0.23646 * 9 8 7 22 22 N 1.32007 * 121.09543 * 359.45283 * 21 9 8 23 23 C 1.32194 * 121.57375 * 0.54071 * 22 21 9 24 24 H 1.08996 * 109.47091 * 269.98480 * 1 2 3 25 25 H 1.09004 * 109.46573 * 29.97905 * 1 2 3 26 26 H 1.08995 * 109.47390 * 149.97449 * 1 2 3 27 27 H 1.08999 * 109.45645 * 88.80955 * 5 3 2 28 28 H 1.08999 * 109.46164 * 208.78462 * 5 3 2 29 29 H 1.08010 * 120.87234 * 0.17353 * 8 7 6 30 30 H 1.09001 * 109.46953 * 209.99493 * 10 9 8 31 31 H 1.09000 * 109.47318 * 329.99091 * 10 9 8 32 32 H 1.09001 * 109.46832 * 299.99686 * 11 10 9 33 33 H 1.09004 * 109.47261 * 59.99705 * 11 10 9 34 34 H 1.08992 * 109.47554 * 299.99696 * 12 11 10 35 35 H 1.08996 * 109.47261 * 60.00229 * 12 11 10 36 36 H 0.97007 * 119.99539 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.45132 * 179.70633 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1640 0.0000 4 8 1.5525 2.2195 0.0309 5 6 3.6560 1.1490 -0.0381 6 8 4.1401 -0.0189 0.6314 7 6 3.5300 -1.1933 0.3253 8 6 4.2373 -2.3842 0.3296 9 6 3.5597 -3.5523 0.0048 10 6 4.2835 -4.8741 -0.0057 11 6 4.1955 -5.5148 1.3808 12 6 4.9297 -6.8571 1.3699 13 6 4.8436 -7.4879 2.7358 14 1 4.3174 -6.9822 3.5320 15 6 5.4366 -8.7106 2.9692 16 7 6.0769 -9.3266 1.9995 17 14 5.3292 -9.4929 4.6621 18 1 4.1160 -10.3459 4.7372 19 1 6.5354 -10.3257 4.8999 20 1 5.2508 -8.4288 5.6949 21 6 2.2176 -3.4895 -0.3137 22 7 1.5676 -2.3406 -0.3038 23 6 2.1731 -1.2053 -0.0004 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 3.9930 1.1392 -1.0746 28 1 4.0408 2.0387 0.4605 29 1 5.2880 -2.4039 0.5792 30 1 3.8234 -5.5344 -0.7409 31 1 5.3297 -4.7135 -0.2661 32 1 4.6556 -4.8546 2.1160 33 1 3.1493 -5.6755 1.6412 34 1 4.4693 -7.5171 0.6349 35 1 5.9759 -6.6968 1.1095 36 1 6.4937 -10.1870 2.1636 37 1 1.6899 -4.3959 -0.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:58 Heat of formation + Delta-G solvation = -39.524659 kcal Electronic energy + Delta-G solvation = -20482.112477 eV Core-core repulsion = 17224.665785 eV Total energy + Delta-G solvation = -3257.446692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.92724 -39.72670 -38.35595 -36.38450 -34.73126 -32.87019 -31.72325 -30.22774 -29.55254 -27.18019 -26.36837 -24.31802 -23.33075 -22.44328 -20.34795 -20.00363 -19.05757 -17.88849 -17.41584 -16.41979 -16.26868 -15.77312 -15.42596 -15.06770 -14.80903 -14.48108 -14.21349 -13.91272 -13.50917 -13.36430 -12.92800 -12.76326 -12.47467 -12.39898 -11.98039 -11.83074 -11.36184 -10.92698 -10.85155 -10.61477 -10.54335 -10.40918 -9.81196 -9.73955 -9.50296 -9.32149 -9.09450 -8.37282 -8.07661 -6.02584 -4.04847 0.70357 1.02527 1.92734 2.11999 2.87708 3.30668 3.37207 3.40597 3.45276 3.58653 4.18162 4.44287 4.49326 4.56091 4.68306 4.89993 5.03942 5.05824 5.13553 5.21187 5.33605 5.45333 5.52972 5.70944 5.85622 5.92641 6.08149 6.15081 6.35012 6.43632 6.67017 6.78635 6.91145 7.05517 7.31450 7.64212 7.70075 7.77454 7.97254 8.39818 9.02319 9.59581 11.08623 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.003101 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.742382 B = 9026.414376 C = 9126.245325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.540 5.540 3 C 0.492 3.508 4 O -0.509 6.509 5 C 0.051 3.949 6 O -0.297 6.297 7 C 0.037 3.963 8 C -0.066 4.066 9 C -0.101 4.101 10 C -0.079 4.079 11 C -0.105 4.105 12 C 0.021 3.979 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.111 3.889 22 N -0.479 5.479 23 C 0.286 3.714 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.260 0.740 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 18.165 -7.279 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.268 5.268 3 C 0.280 3.720 4 O -0.383 6.383 5 C -0.027 4.027 6 O -0.210 6.210 7 C -0.012 4.012 8 C -0.092 4.092 9 C -0.104 4.104 10 C -0.117 4.117 11 C -0.143 4.143 12 C -0.016 4.016 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.046 4.046 22 N -0.193 5.193 23 C 0.056 3.944 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.162 18.740 -7.369 21.372 hybrid contribution 0.580 -0.513 1.039 1.296 sum -6.582 18.227 -6.330 20.386 Atomic orbital electron populations 1.21824 0.76584 1.04416 1.03073 1.45461 1.08414 1.03432 1.69468 1.21557 0.91279 0.83094 0.76083 1.90769 1.70697 1.29316 1.47544 1.23260 0.88975 0.89345 1.01159 1.86247 1.58332 1.12990 1.63448 1.19336 0.89885 0.87684 1.04291 1.20996 1.01112 0.88854 0.98282 1.21104 0.95075 0.96464 0.97776 1.20773 0.99692 0.90485 1.00751 1.21673 1.00964 0.99027 0.92591 1.19115 0.95355 0.90065 0.97088 1.21258 1.34066 1.03925 0.96723 0.92724 1.25018 0.95311 0.97250 0.96849 1.69958 1.35766 1.15866 1.31912 0.86612 0.77518 0.79356 0.84640 1.20659 1.21228 1.19879 1.22487 0.91413 0.94140 0.96587 1.66948 1.39162 0.97457 1.15725 1.18490 0.87572 0.87155 1.01164 0.91756 0.90068 0.88839 0.88179 0.83449 0.82956 0.90465 0.90673 0.93157 0.93091 0.96450 0.96490 0.92994 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.34 59.85 0.62 1.46 16 2 N -0.54 -6.58 3.10 -122.44 -0.38 -6.96 16 3 C 0.49 5.74 7.66 -10.85 -0.08 5.66 16 4 O -0.51 -7.01 16.75 5.55 0.09 -6.92 16 5 C 0.05 0.44 7.18 36.03 0.26 0.70 16 6 O -0.30 -3.36 10.46 -19.24 -0.20 -3.57 16 7 C 0.04 0.46 6.45 -38.99 -0.25 0.21 16 8 C -0.07 -0.82 9.81 -39.24 -0.39 -1.21 16 9 C -0.10 -1.31 5.15 -104.43 -0.54 -1.85 16 10 C -0.08 -1.14 5.37 -27.88 -0.15 -1.28 16 11 C -0.10 -1.96 5.13 -26.73 -0.14 -2.10 16 12 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 13 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 C 0.11 1.38 10.83 -17.53 -0.19 1.19 16 22 N -0.48 -6.33 9.25 -12.15 -0.11 -6.45 16 23 C 0.29 3.74 7.25 -154.26 -1.12 2.62 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 26 H 0.09 0.92 7.32 -51.93 -0.38 0.54 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.15 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.15 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 31 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 318.59 15.07 4.80 4.80 Total: -1.00 -32.17 318.59 -7.57 -39.73 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -4.96 Total: -3.93 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.53 Total: -7.41 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.24 Total: -39.02 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.11 Total: -10.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.17 -7.57 -39.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.206 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds