Wall clock time and date at job start Mon Mar 30 2020 20:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35011 * 120.44158 * 2 1 4 4 O 1.21284 * 120.07318 * 1.68878 * 3 2 1 5 5 C 1.50753 * 119.86135 * 181.66861 * 3 2 1 6 6 O 1.43051 * 109.54517 * 328.78974 * 5 3 2 7 7 C 1.35842 * 116.64273 * 46.04242 * 6 5 3 8 8 C 1.38504 * 120.88676 * 147.36667 * 7 6 5 9 9 C 1.38887 * 118.24758 * 180.15943 * 8 7 6 10 10 C 1.50706 * 120.33356 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47238 * 89.99881 * 10 9 8 12 12 C 1.52996 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.46946 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00275 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99908 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99697 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99899 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99714 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99774 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99585 * 17 15 13 21 21 C 1.38087 * 119.33019 * 0.23646 * 9 8 7 22 22 N 1.32007 * 121.09543 * 359.45283 * 21 9 8 23 23 C 1.32194 * 121.57375 * 0.54071 * 22 21 9 24 24 H 1.08996 * 109.47091 * 269.98480 * 1 2 3 25 25 H 1.09004 * 109.46573 * 29.97905 * 1 2 3 26 26 H 1.08995 * 109.47390 * 149.97449 * 1 2 3 27 27 H 1.08999 * 109.45645 * 88.80955 * 5 3 2 28 28 H 1.08999 * 109.46164 * 208.78462 * 5 3 2 29 29 H 1.08010 * 120.87234 * 0.17353 * 8 7 6 30 30 H 1.09001 * 109.46953 * 209.99493 * 10 9 8 31 31 H 1.09000 * 109.47318 * 329.99091 * 10 9 8 32 32 H 1.09001 * 109.46832 * 299.99686 * 11 10 9 33 33 H 1.09004 * 109.47261 * 59.99705 * 11 10 9 34 34 H 1.08992 * 109.47554 * 299.99696 * 12 11 10 35 35 H 1.08996 * 109.47261 * 60.00229 * 12 11 10 36 36 H 0.97007 * 119.99539 * 180.02562 * 16 15 13 37 37 H 1.08001 * 119.45132 * 179.70633 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1640 0.0000 4 8 1.5525 2.2195 0.0309 5 6 3.6560 1.1490 -0.0381 6 8 4.1401 -0.0189 0.6314 7 6 3.5300 -1.1933 0.3253 8 6 4.2373 -2.3842 0.3296 9 6 3.5597 -3.5523 0.0048 10 6 4.2835 -4.8741 -0.0057 11 6 4.1955 -5.5148 1.3808 12 6 4.9297 -6.8571 1.3699 13 6 4.8436 -7.4879 2.7358 14 1 4.3174 -6.9822 3.5320 15 6 5.4366 -8.7106 2.9692 16 7 6.0769 -9.3266 1.9995 17 14 5.3292 -9.4929 4.6621 18 1 4.1160 -10.3459 4.7372 19 1 6.5354 -10.3257 4.8999 20 1 5.2508 -8.4288 5.6949 21 6 2.2176 -3.4895 -0.3137 22 7 1.5676 -2.3406 -0.3038 23 6 2.1731 -1.2053 -0.0004 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3632 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5142 27 1 3.9930 1.1392 -1.0746 28 1 4.0408 2.0387 0.4605 29 1 5.2880 -2.4039 0.5792 30 1 3.8234 -5.5344 -0.7409 31 1 5.3297 -4.7135 -0.2661 32 1 4.6556 -4.8546 2.1160 33 1 3.1493 -5.6755 1.6412 34 1 4.4693 -7.5171 0.6349 35 1 5.9759 -6.6968 1.1095 36 1 6.4937 -10.1870 2.1636 37 1 1.6899 -4.3959 -0.5711 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:57 Heat of formation + Delta-G solvation = -58.626765 kcal Electronic energy + Delta-G solvation = -20482.940806 eV Core-core repulsion = 17224.665785 eV Total energy + Delta-G solvation = -3258.275021 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.82987 -40.68165 -39.24312 -37.41983 -36.19007 -34.56617 -32.90270 -31.54191 -30.37291 -28.63532 -27.28311 -25.81814 -24.25927 -23.78451 -21.91154 -20.97359 -19.98256 -18.78979 -18.48342 -18.17686 -17.29650 -16.73854 -16.53234 -16.31910 -15.91179 -15.68836 -15.40796 -15.10085 -14.61340 -14.43854 -14.12266 -14.01685 -13.68871 -13.53256 -13.26737 -13.06044 -12.70109 -12.55817 -12.54065 -12.35650 -11.61947 -11.52512 -11.37848 -11.27471 -11.06564 -10.63358 -10.50474 -10.39257 -9.05129 -8.16403 -6.26129 -0.26141 0.07607 1.03900 1.25797 1.42545 1.42724 1.53766 2.04261 2.43530 2.56608 2.69208 3.17147 3.25111 3.62547 3.82787 3.92671 3.99534 4.11708 4.15169 4.33689 4.40957 4.52414 4.55401 4.61068 4.72767 4.84027 4.89806 5.04656 5.28548 5.30040 5.31027 5.39006 5.54745 5.59701 5.85306 5.93620 6.02506 6.31448 6.42528 6.74085 6.91863 7.42829 8.94822 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.034785 B = 0.003101 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.742382 B = 9026.414376 C = 9126.245325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.548 5.548 3 C 0.489 3.511 4 O -0.535 6.535 5 C 0.051 3.949 6 O -0.302 6.302 7 C 0.034 3.966 8 C -0.066 4.066 9 C -0.106 4.106 10 C -0.066 4.066 11 C -0.092 4.092 12 C 0.022 3.978 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.958 3.042 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.266 1.266 21 C 0.110 3.890 22 N -0.490 5.490 23 C 0.279 3.721 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.175 0.825 29 H 0.165 0.835 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.051 0.949 34 H -0.002 1.002 35 H -0.004 1.004 36 H 0.263 0.737 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.247 19.031 -6.902 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.275 5.275 3 C 0.278 3.722 4 O -0.411 6.411 5 C -0.026 4.026 6 O -0.216 6.216 7 C -0.015 4.015 8 C -0.092 4.092 9 C -0.109 4.109 10 C -0.104 4.104 11 C -0.130 4.130 12 C -0.015 4.015 13 C -0.581 4.581 14 H 0.074 0.926 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.783 3.217 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.190 1.190 21 C -0.047 4.047 22 N -0.204 5.204 23 C 0.049 3.951 24 H 0.085 0.915 25 H 0.104 0.896 26 H 0.114 0.886 27 H 0.145 0.855 28 H 0.193 0.807 29 H 0.183 0.817 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.016 0.984 35 H 0.015 0.985 36 H 0.072 0.928 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.260 19.618 -6.992 22.056 hybrid contribution 0.590 -0.729 0.896 1.297 sum -6.670 18.889 -6.096 20.939 Atomic orbital electron populations 1.21892 0.76021 1.04764 1.03365 1.45660 1.09080 1.03482 1.69290 1.22125 0.92496 0.82479 0.75126 1.90757 1.71506 1.30018 1.48796 1.23580 0.86780 0.89163 1.03049 1.86240 1.58264 1.13141 1.63923 1.19367 0.89754 0.88290 1.04107 1.21159 1.01749 0.88682 0.97627 1.20885 0.95183 0.95799 0.99017 1.20539 1.00550 0.91229 0.98097 1.21435 0.99879 0.96197 0.95466 1.19038 0.94659 0.92618 0.95145 1.21746 1.33792 1.04382 0.98149 0.92584 1.25901 0.94989 0.97971 1.00799 1.70077 1.36723 1.16351 1.34052 0.85552 0.77691 0.78500 0.79952 1.19890 1.20837 1.19006 1.22761 0.91396 0.94559 0.95950 1.66991 1.39423 0.97707 1.16272 1.18684 0.87989 0.87358 1.01036 0.91500 0.89625 0.88568 0.85538 0.80749 0.81736 0.89603 0.90113 0.93377 0.93059 0.98377 0.98546 0.92845 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.59 10.34 127.77 1.32 2.91 16 2 N -0.55 -12.68 3.10 -659.55 -2.05 -14.73 16 3 C 0.49 10.66 7.66 87.64 0.67 11.33 16 4 O -0.53 -14.13 16.75 -3.04 -0.05 -14.18 16 5 C 0.05 0.76 7.18 71.25 0.51 1.27 16 6 O -0.30 -6.17 10.46 -91.78 -0.96 -7.13 16 7 C 0.03 0.79 6.45 22.65 0.15 0.94 16 8 C -0.07 -1.52 9.81 22.49 0.22 -1.30 16 9 C -0.11 -2.56 5.15 -19.74 -0.10 -2.66 16 10 C -0.07 -1.82 5.37 29.85 0.16 -1.66 16 11 C -0.09 -3.39 5.13 30.59 0.16 -3.23 16 12 C 0.02 1.11 4.97 29.85 0.15 1.26 16 13 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 14 H 0.06 3.01 7.74 -2.91 -0.02 2.98 16 15 C 0.00 0.06 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 17 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 C 0.11 2.58 10.83 84.63 0.92 3.49 16 22 N -0.49 -12.28 9.25 -192.37 -1.78 -14.06 16 23 C 0.28 6.89 7.25 132.96 0.96 7.85 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.09 1.59 7.48 -2.38 -0.02 1.57 16 26 H 0.10 1.82 7.32 -2.39 -0.02 1.80 16 27 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.18 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.09 2.21 8.09 -2.39 -0.02 2.19 16 31 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 36 H 0.26 14.71 8.31 -92.70 -0.77 13.94 16 37 H 0.18 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -68.47 318.59 4.36 -64.12 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.07 Total: 4.55 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 5.81 Total: -9.08 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -3.54 Total: -83.90 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.01 Total: -21.31 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -68.47 4.36 -64.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.490 kcal (2) G-P(sol) polarization free energy of solvation -68.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds