Wall clock time and date at job start Mon Mar 30 2020 20:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99887 * 2 1 4 4 C 1.50699 * 109.47296 * 66.05105 * 3 2 1 5 5 H 1.08002 * 119.99448 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00206 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99935 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99904 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46929 * 90.00088 * 8 6 4 10 10 H 1.48499 * 109.47191 * 210.00057 * 8 6 4 11 11 H 1.48498 * 109.47241 * 329.99987 * 8 6 4 12 12 C 1.46903 * 110.99720 * 236.05015 * 2 1 3 13 13 H 1.09002 * 110.72766 * 178.25273 * 12 2 1 14 14 C 1.54347 * 110.82357 * 54.84474 * 12 2 1 15 15 C 1.51367 * 105.17417 * 267.91908 * 14 12 2 16 16 C 1.38496 * 130.39490 * 162.85899 * 15 14 12 17 17 C 1.38108 * 120.21581 * 180.02562 * 16 15 14 18 18 C 1.38256 * 119.93507 * 359.92918 * 17 16 15 19 19 N 1.48018 * 120.03031 * 180.02562 * 18 17 16 20 20 O 1.21806 * 119.99859 * 179.97438 * 19 18 17 21 21 O 1.21795 * 120.00229 * 359.97438 * 19 18 17 22 22 C 1.38101 * 119.93168 * 0.03528 * 18 17 16 23 23 C 1.38216 * 109.75788 * 342.82277 * 15 14 12 24 24 C 1.51680 * 109.83982 * 0.15064 * 23 15 14 25 25 H 1.08993 * 109.46975 * 183.95198 * 1 2 3 26 26 H 1.09001 * 109.46583 * 303.95261 * 1 2 3 27 27 H 1.09004 * 109.46936 * 63.94941 * 1 2 3 28 28 H 1.09004 * 109.46844 * 186.04626 * 3 2 1 29 29 H 1.08999 * 109.47440 * 306.04646 * 3 2 1 30 30 H 0.96995 * 120.00204 * 180.02562 * 7 6 4 31 31 H 1.08994 * 110.30254 * 26.84629 * 14 12 2 32 32 H 1.09000 * 110.30164 * 148.99132 * 14 12 2 33 33 H 1.07995 * 119.89334 * 359.94077 * 16 15 14 34 34 H 1.07995 * 120.02962 * 179.97438 * 17 16 15 35 35 H 1.08004 * 119.89250 * 179.97438 * 22 18 17 36 36 H 1.08998 * 110.25544 * 258.10835 * 24 23 15 37 37 H 1.09000 * 110.49386 * 135.85647 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0278 3.3491 1.5289 7 7 2.7128 4.0015 0.6154 8 14 1.5829 4.1868 3.1382 9 1 2.6590 3.9497 4.1336 10 1 1.4315 5.6465 2.9111 11 1 0.3045 3.6301 3.6491 12 6 1.9954 -0.7659 -1.1377 13 1 3.0850 -0.7374 -1.1509 14 6 1.4165 -0.2398 -2.4682 15 6 0.1815 -1.0774 -2.7217 16 6 -0.8916 -0.8605 -3.5700 17 6 -1.9221 -1.7775 -3.6357 18 6 -1.8827 -2.9168 -2.8535 19 7 -2.9858 -3.9014 -2.9227 20 8 -2.9503 -4.9052 -2.2336 21 8 -3.9290 -3.7078 -3.6685 22 6 -0.8132 -3.1352 -2.0075 23 6 0.2208 -2.2163 -1.9396 24 6 1.4851 -2.2222 -1.1018 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3632 0.5740 0.8525 27 1 -0.3633 0.4513 -0.9233 28 1 3.0798 1.3444 -0.1083 29 1 1.5611 1.9274 -0.8309 30 1 2.9881 4.9174 0.7777 31 1 1.1473 0.8121 -2.3738 32 1 2.1376 -0.3755 -3.2743 33 1 -0.9232 0.0294 -4.1812 34 1 -2.7576 -1.6051 -4.2980 35 1 -0.7833 -4.0253 -1.3965 36 1 2.2246 -2.8929 -1.5392 37 1 1.2626 -2.5198 -0.0771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254601105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:02 Heat of formation + Delta-G solvation = 28.708426 kcal Electronic energy + Delta-G solvation = -21146.052493 eV Core-core repulsion = 17891.564610 eV Total energy + Delta-G solvation = -3254.487883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.23716 -40.75628 -37.47071 -36.60476 -34.09816 -32.31683 -32.07710 -29.48793 -28.04482 -27.17529 -26.01369 -24.67078 -22.76723 -21.78630 -21.40156 -19.54329 -18.71537 -18.62460 -17.57225 -16.65786 -16.18682 -15.78989 -15.51596 -14.68788 -14.43526 -14.15721 -13.70845 -13.55217 -13.33685 -12.33299 -12.25965 -12.12468 -11.89397 -11.71503 -11.55624 -11.34642 -11.27606 -11.19774 -11.18479 -11.02109 -10.94917 -10.69676 -10.57157 -9.99312 -9.47730 -9.33527 -9.00911 -8.53250 -7.44279 -6.13805 -4.15286 -0.20404 0.84708 1.30830 1.35767 3.15733 3.25578 3.32088 3.35329 4.02794 4.26409 4.32816 4.41165 4.68570 4.72409 4.81995 4.91645 5.18312 5.22263 5.34855 5.43342 5.53041 5.61076 5.67730 5.69496 5.84886 5.95321 5.98898 6.09079 6.16061 6.23922 6.29509 6.44851 6.61903 7.11349 7.17236 7.60125 7.67067 7.91448 8.02865 8.39085 8.91966 9.49657 10.96994 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.003947 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.879586 B = 7092.676579 C = 7297.145053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.526 5.526 3 C 0.192 3.808 4 C -0.511 4.511 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.086 3.914 13 H 0.100 0.900 14 C -0.130 4.130 15 C -0.024 4.024 16 C -0.111 4.111 17 C -0.057 4.057 18 C -0.053 4.053 19 N 0.035 4.965 20 O -0.167 6.167 21 O -0.169 6.169 22 C -0.046 4.046 23 C -0.088 4.088 24 C -0.077 4.077 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.015 0.985 28 H 0.032 0.968 29 H -0.006 1.006 30 H 0.262 0.738 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.026 -11.118 -8.833 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.248 5.248 3 C 0.067 3.933 4 C -0.549 4.549 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.024 4.024 13 H 0.118 0.882 14 C -0.169 4.169 15 C -0.025 4.025 16 C -0.130 4.130 17 C -0.076 4.076 18 C -0.136 4.136 19 N 0.552 4.448 20 O -0.382 6.382 21 O -0.383 6.383 22 C -0.065 4.065 23 C -0.089 4.089 24 C -0.114 4.114 25 H 0.064 0.936 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.050 0.950 29 H 0.012 0.988 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.106 0.894 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.263 -10.691 -8.379 13.970 hybrid contribution -0.893 0.756 -0.025 1.171 sum -4.156 -9.934 -8.404 13.660 Atomic orbital electron populations 1.22346 0.89015 0.99571 1.00655 1.62333 1.06993 1.18196 1.37327 1.19752 0.95442 0.81258 0.96802 1.21136 1.35079 0.96998 1.01694 0.91860 1.24967 0.95179 0.97299 0.97003 1.69938 1.38225 1.11573 1.34016 0.86500 0.78931 0.78463 0.83556 1.20534 1.21276 1.19861 1.22482 0.99981 0.92008 0.87961 0.88240 1.22081 0.93506 1.00707 1.00604 1.21219 0.94942 0.94633 0.91671 1.20669 0.92586 0.99788 0.99970 1.20867 0.99330 0.90755 0.96620 1.20832 0.91422 0.93712 1.07635 1.43599 1.01476 1.01094 0.98606 1.94528 1.84928 1.17572 1.41183 1.94515 1.25551 1.82405 1.35873 1.20370 0.90383 0.99999 0.95760 1.20762 0.96325 0.93703 0.98147 1.21339 0.92077 0.98148 0.99856 0.93633 0.90715 0.96690 0.95022 0.98792 0.92836 0.88677 0.88994 0.83878 0.83125 0.83342 0.89350 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.01 60.07 0.48 1.07 16 2 N -0.53 -10.03 4.76 -234.62 -1.12 -11.15 16 3 C 0.19 4.55 4.37 -4.98 -0.02 4.53 16 4 C -0.51 -13.58 8.46 -34.44 -0.29 -13.88 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.09 1.26 3.31 -66.30 -0.22 1.04 16 13 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 14 C -0.13 -1.72 5.65 -26.85 -0.15 -1.87 16 15 C -0.02 -0.30 4.48 -104.21 -0.47 -0.76 16 16 C -0.11 -1.22 10.04 -39.53 -0.40 -1.62 16 17 C -0.06 -0.64 9.55 -39.62 -0.38 -1.01 16 18 C -0.05 -0.68 6.85 -79.99 -0.55 -1.22 16 19 N 0.03 0.50 4.45 33.94 0.15 0.65 16 20 O -0.17 -2.49 18.45 -29.46 -0.54 -3.04 16 21 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 22 C -0.05 -0.56 9.55 -39.54 -0.38 -0.93 16 23 C -0.09 -1.07 4.49 -104.05 -0.47 -1.54 16 24 C -0.08 -0.91 5.84 -26.69 -0.16 -1.07 16 25 H 0.04 0.73 6.01 -51.93 -0.31 0.42 16 26 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 27 H 0.01 0.26 5.92 -51.93 -0.31 -0.04 16 28 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 29 H -0.01 -0.14 6.78 -51.93 -0.35 -0.49 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 1.48 6.00 -51.93 -0.31 1.17 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.15 1.43 7.62 -52.49 -0.40 1.03 16 35 H 0.15 1.61 7.60 -52.48 -0.40 1.21 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.17 7.81 -51.93 -0.41 0.77 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -29.03 306.69 -9.26 -38.28 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.45 Total: -1.70 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.09 Total: -15.82 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.23 Total: -35.24 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -1.09 Total: -6.06 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.03 -9.26 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254601105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.992 kcal (2) G-P(sol) polarization free energy of solvation -29.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds