Wall clock time and date at job start Mon Mar 30 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35869 * 126.17733 * 2 1 4 4 N 1.30171 * 109.11680 * 179.97438 * 3 2 1 5 5 C 1.35822 * 109.01249 * 0.02562 * 4 3 2 6 6 C 1.46716 * 126.25064 * 179.97438 * 5 4 3 7 7 C 1.35309 * 119.99928 * 58.35069 * 6 5 4 8 8 C 1.41501 * 120.00155 * 352.80807 * 7 6 5 9 9 O 1.21689 * 119.99834 * 53.17034 * 8 7 6 10 10 O 1.34958 * 120.00629 * 233.17502 * 8 7 6 11 11 C 1.42901 * 117.00524 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46958 * 329.99972 * 11 10 8 13 13 C 1.50698 * 109.47362 * 209.99704 * 11 10 8 14 14 H 1.07995 * 120.00643 * 274.93229 * 13 11 10 15 15 C 1.37882 * 119.99703 * 94.92694 * 13 11 10 16 16 N 1.31512 * 119.99769 * 184.11490 * 15 13 11 17 17 Si 1.86797 * 119.99998 * 4.11569 * 15 13 11 18 18 H 1.48502 * 109.47331 * 93.16664 * 17 15 13 19 19 H 1.48499 * 109.47275 * 213.16658 * 17 15 13 20 20 H 1.48501 * 109.47035 * 333.16656 * 17 15 13 21 21 C 1.52998 * 109.46893 * 89.99945 * 11 10 8 22 22 C 1.53000 * 117.49761 * 225.67120 * 21 11 10 23 23 C 1.53005 * 117.49957 * 294.33043 * 21 11 10 24 24 C 1.36028 * 126.17432 * 180.29283 * 2 1 3 25 25 H 1.09000 * 109.47211 * 89.96769 * 1 2 3 26 26 H 1.08997 * 109.47212 * 209.97599 * 1 2 3 27 27 H 1.09003 * 109.46721 * 329.96926 * 1 2 3 28 28 H 1.07994 * 125.43905 * 359.96850 * 3 2 1 29 29 H 1.07992 * 120.00121 * 238.34780 * 6 5 4 30 30 H 1.08003 * 120.00259 * 172.81253 * 7 6 5 31 31 H 0.97000 * 119.99851 * 180.02562 * 16 15 13 32 32 H 1.08996 * 115.55409 * 80.00126 * 21 11 10 33 33 H 1.09004 * 117.50013 * 215.00531 * 22 21 11 34 34 H 1.09004 * 117.50219 * 0.02562 * 22 21 11 35 35 H 1.08995 * 117.49609 * 359.97438 * 23 21 11 36 36 H 1.09000 * 117.49560 * 144.97807 * 23 21 11 37 37 H 1.08001 * 126.63448 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0967 0.0000 4 7 3.5114 0.7148 0.0006 5 6 3.5577 -0.6426 0.0004 6 6 4.7697 -1.4694 0.0003 7 6 5.6751 -1.3428 0.9979 8 6 5.5320 -0.3120 1.9566 9 8 4.4840 -0.1855 2.5622 10 8 6.5575 0.5310 2.1995 11 6 6.3430 1.5485 3.1797 12 1 5.2881 1.8224 3.1941 13 6 7.1718 2.7594 2.8365 14 1 8.2022 2.8165 3.1548 15 6 6.6145 3.7945 2.1161 16 7 7.3587 4.8140 1.7469 17 14 4.8025 3.7488 1.6645 18 1 4.0159 4.4652 2.7004 19 1 4.6035 4.4073 0.3485 20 1 4.3475 2.3374 1.5856 21 6 6.7527 1.0238 4.5573 22 6 5.7987 1.2844 5.7248 23 6 5.9344 -0.1266 5.1471 24 6 2.2679 -1.0980 -0.0056 25 1 -0.3634 0.0006 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 1.9264 2.1216 -0.0005 29 1 4.9393 -2.1790 -0.7959 30 1 6.5070 -2.0285 1.0624 31 1 6.9666 5.5424 1.2404 32 1 7.8220 1.0405 4.7678 33 1 6.2405 1.4726 6.7033 34 1 4.8790 1.8293 5.5113 35 1 5.1040 -0.5094 4.5539 36 1 6.4656 -0.8670 5.7453 37 1 1.9487 -2.1298 -0.0105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:08 Heat of formation + Delta-G solvation = 30.534549 kcal Electronic energy + Delta-G solvation = -21828.986176 eV Core-core repulsion = 18574.577479 eV Total energy + Delta-G solvation = -3254.408697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.68983 -39.46994 -36.66053 -34.92175 -34.28150 -32.67436 -32.53456 -29.23931 -28.36597 -26.88718 -24.15954 -22.78172 -21.61757 -20.99041 -20.95235 -19.32494 -18.73032 -17.45439 -16.77179 -16.45297 -15.76277 -15.39856 -15.15444 -14.61077 -14.14892 -13.85239 -13.72850 -13.52800 -12.96521 -12.84737 -12.68047 -12.54175 -12.06891 -11.62067 -11.35881 -11.14280 -10.78255 -10.67211 -10.07711 -10.01032 -9.64623 -9.52880 -9.34787 -9.25518 -9.12268 -8.98704 -8.69384 -8.50965 -7.97791 -6.16029 -4.23677 1.60140 2.27032 2.86698 3.28407 3.39651 3.47458 3.56624 3.77764 4.17037 4.51525 4.57218 4.74654 4.77023 4.92547 4.94522 5.16744 5.27442 5.29636 5.55847 5.63061 5.74434 5.81094 5.83237 6.11130 6.28078 6.29501 6.34944 6.45344 6.61006 6.69655 6.85306 6.87690 6.95168 7.16148 7.29978 7.59146 7.93169 8.28360 8.43825 8.90368 9.08247 9.45984 10.92670 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.007721 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.846611 B = 3625.803514 C = 4362.279420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.466 5.466 3 C 0.181 3.819 4 N -0.448 5.448 5 C 0.015 3.985 6 C -0.015 4.015 7 C -0.158 4.158 8 C 0.493 3.507 9 O -0.520 6.520 10 O -0.343 6.343 11 C 0.206 3.794 12 H 0.053 0.947 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.087 3.913 16 N -0.878 5.878 17 Si 0.851 3.149 18 H -0.285 1.285 19 H -0.287 1.287 20 H -0.210 1.210 21 C -0.137 4.137 22 C -0.172 4.172 23 C -0.204 4.204 24 C -0.031 4.031 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.198 0.802 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.268 0.732 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -12.862 -3.739 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.150 5.150 3 C -0.102 4.102 4 N -0.165 5.165 5 C -0.113 4.113 6 C -0.034 4.034 7 C -0.179 4.179 8 C 0.339 3.661 9 O -0.413 6.413 10 O -0.260 6.260 11 C 0.153 3.847 12 H 0.071 0.929 13 C -0.541 4.541 14 H 0.098 0.902 15 C -0.120 4.120 16 N -0.514 5.514 17 Si 0.676 3.324 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.132 1.132 21 C -0.155 4.155 22 C -0.209 4.209 23 C -0.241 4.241 24 C -0.165 4.165 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.215 0.785 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -12.870 -12.072 -3.624 18.014 hybrid contribution -1.581 -0.168 -0.137 1.596 sum -14.451 -12.240 -3.761 19.308 Atomic orbital electron populations 1.21986 0.76961 1.04581 1.03168 1.45325 1.07400 1.06963 1.55267 1.24991 0.85533 0.93123 1.06557 1.70945 1.18570 1.10279 1.16701 1.19527 0.92239 0.90457 1.09078 1.21280 0.89893 0.96073 0.96147 1.21728 1.00817 0.98703 0.96613 1.19947 0.83050 0.81863 0.81286 1.90739 1.28834 1.71885 1.49805 1.86738 1.40858 1.40833 1.57529 1.20159 0.98175 0.84479 0.81866 0.92886 1.20873 1.00388 0.96990 1.35802 0.90219 1.25144 0.98758 0.94972 0.93087 1.69917 1.36334 1.09284 1.35864 0.87140 0.85285 0.82498 0.77434 1.21111 1.21292 1.13171 1.22731 0.97028 1.00405 0.95383 1.22758 1.01787 0.98964 0.97405 1.23194 1.04467 0.91426 1.05022 1.22449 0.90294 0.92268 1.11455 0.90765 0.89855 0.89589 0.78506 0.84217 0.83929 0.92263 0.88342 0.89630 0.89450 0.87838 0.90301 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 11.16 59.85 0.67 1.23 16 2 N -0.47 -6.01 3.14 -125.48 -0.39 -6.41 16 3 C 0.18 2.95 12.55 -89.89 -1.13 1.83 16 4 N -0.45 -9.04 9.06 -11.11 -0.10 -9.14 16 5 C 0.01 0.25 5.13 -83.20 -0.43 -0.17 16 6 C -0.01 -0.22 10.18 -37.20 -0.38 -0.60 16 7 C -0.16 -2.76 9.90 -39.38 -0.39 -3.15 16 8 C 0.49 11.04 5.96 31.97 0.19 11.23 16 9 O -0.52 -12.39 12.40 -19.41 -0.24 -12.63 16 10 O -0.34 -8.76 9.73 -41.20 -0.40 -9.16 16 11 C 0.21 5.40 1.79 -27.89 -0.05 5.35 16 12 H 0.05 1.46 3.92 -51.93 -0.20 1.26 16 13 C -0.50 -14.99 9.24 -34.44 -0.32 -15.31 16 14 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 16 N -0.88 -27.34 13.96 55.43 0.77 -26.56 16 17 Si 0.85 22.36 27.23 -169.99 -4.63 17.73 16 18 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.21 -5.48 4.99 56.52 0.28 -5.20 16 21 C -0.14 -3.13 5.32 -90.62 -0.48 -3.62 16 22 C -0.17 -3.47 10.18 -26.69 -0.27 -3.74 16 23 C -0.20 -4.08 9.81 -26.69 -0.26 -4.34 16 24 C -0.03 -0.42 11.53 -16.22 -0.19 -0.61 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.20 2.72 8.06 -52.49 -0.42 2.29 16 29 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.14 1.96 8.06 -52.48 -0.42 1.53 16 31 H 0.27 7.79 8.31 -40.82 -0.34 7.45 16 32 H 0.10 2.21 8.14 -51.93 -0.42 1.79 16 33 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 35 H 0.10 2.22 5.54 -51.93 -0.29 1.94 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -37.58 317.94 -8.15 -45.73 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.82 Total: 5.04 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.13 Total: -9.39 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.28 Total: -42.11 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.64 Total: -21.79 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.63 Total: 17.73 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -37.58 -8.15 -45.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.266 kcal (2) G-P(sol) polarization free energy of solvation -37.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds