Wall clock time and date at job start Mon Mar 30 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35869 * 126.17733 * 2 1 4 4 N 1.30171 * 109.11680 * 179.97438 * 3 2 1 5 5 C 1.35822 * 109.01249 * 0.02562 * 4 3 2 6 6 C 1.46716 * 126.25064 * 179.97438 * 5 4 3 7 7 C 1.35309 * 119.99928 * 58.35069 * 6 5 4 8 8 C 1.41501 * 120.00155 * 352.80807 * 7 6 5 9 9 O 1.21689 * 119.99834 * 53.17034 * 8 7 6 10 10 O 1.34958 * 120.00629 * 233.17502 * 8 7 6 11 11 C 1.42901 * 117.00524 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46958 * 329.99972 * 11 10 8 13 13 C 1.50698 * 109.47362 * 209.99704 * 11 10 8 14 14 H 1.07995 * 120.00643 * 274.93229 * 13 11 10 15 15 C 1.37882 * 119.99703 * 94.92694 * 13 11 10 16 16 N 1.31512 * 119.99769 * 184.11490 * 15 13 11 17 17 Si 1.86797 * 119.99998 * 4.11569 * 15 13 11 18 18 H 1.48502 * 109.47331 * 93.16664 * 17 15 13 19 19 H 1.48499 * 109.47275 * 213.16658 * 17 15 13 20 20 H 1.48501 * 109.47035 * 333.16656 * 17 15 13 21 21 C 1.52998 * 109.46893 * 89.99945 * 11 10 8 22 22 C 1.53000 * 117.49761 * 225.67120 * 21 11 10 23 23 C 1.53005 * 117.49957 * 294.33043 * 21 11 10 24 24 C 1.36028 * 126.17432 * 180.29283 * 2 1 3 25 25 H 1.09000 * 109.47211 * 89.96769 * 1 2 3 26 26 H 1.08997 * 109.47212 * 209.97599 * 1 2 3 27 27 H 1.09003 * 109.46721 * 329.96926 * 1 2 3 28 28 H 1.07994 * 125.43905 * 359.96850 * 3 2 1 29 29 H 1.07992 * 120.00121 * 238.34780 * 6 5 4 30 30 H 1.08003 * 120.00259 * 172.81253 * 7 6 5 31 31 H 0.97000 * 119.99851 * 180.02562 * 16 15 13 32 32 H 1.08996 * 115.55409 * 80.00126 * 21 11 10 33 33 H 1.09004 * 117.50013 * 215.00531 * 22 21 11 34 34 H 1.09004 * 117.50219 * 0.02562 * 22 21 11 35 35 H 1.08995 * 117.49609 * 359.97438 * 23 21 11 36 36 H 1.09000 * 117.49560 * 144.97807 * 23 21 11 37 37 H 1.08001 * 126.63448 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0967 0.0000 4 7 3.5114 0.7148 0.0006 5 6 3.5577 -0.6426 0.0004 6 6 4.7697 -1.4694 0.0003 7 6 5.6751 -1.3428 0.9979 8 6 5.5320 -0.3120 1.9566 9 8 4.4840 -0.1855 2.5622 10 8 6.5575 0.5310 2.1995 11 6 6.3430 1.5485 3.1797 12 1 5.2881 1.8224 3.1941 13 6 7.1718 2.7594 2.8365 14 1 8.2022 2.8165 3.1548 15 6 6.6145 3.7945 2.1161 16 7 7.3587 4.8140 1.7469 17 14 4.8025 3.7488 1.6645 18 1 4.0159 4.4652 2.7004 19 1 4.6035 4.4073 0.3485 20 1 4.3475 2.3374 1.5856 21 6 6.7527 1.0238 4.5573 22 6 5.7987 1.2844 5.7248 23 6 5.9344 -0.1266 5.1471 24 6 2.2679 -1.0980 -0.0056 25 1 -0.3634 0.0006 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5143 28 1 1.9264 2.1216 -0.0005 29 1 4.9393 -2.1790 -0.7959 30 1 6.5070 -2.0285 1.0624 31 1 6.9666 5.5424 1.2404 32 1 7.8220 1.0405 4.7678 33 1 6.2405 1.4726 6.7033 34 1 4.8790 1.8293 5.5113 35 1 5.1040 -0.5094 4.5539 36 1 6.4656 -0.8670 5.7453 37 1 1.9487 -2.1298 -0.0105 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:08 Heat of formation + Delta-G solvation = 7.289720 kcal Electronic energy + Delta-G solvation = -21829.994148 eV Core-core repulsion = 18574.577479 eV Total energy + Delta-G solvation = -3255.416668 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.78233 -41.24314 -38.36563 -36.65923 -35.47155 -34.83523 -33.82696 -30.72977 -30.05638 -27.77702 -25.74017 -24.62744 -23.22388 -22.32359 -22.04209 -21.15986 -20.25148 -19.16098 -18.62470 -17.82180 -17.41930 -16.62963 -16.57839 -16.28190 -15.56557 -15.36595 -15.09952 -14.80664 -14.57693 -14.37270 -13.82007 -13.54483 -13.48251 -13.33197 -13.21496 -12.97535 -12.79365 -12.31855 -11.95436 -11.77560 -11.41206 -11.14539 -11.00343 -10.94382 -10.78996 -10.66721 -10.52411 -10.23408 -9.09647 -8.47476 -6.59756 0.36182 1.18344 1.25185 1.32896 1.63871 1.76112 1.98930 2.21863 2.33560 2.45138 3.05052 3.21772 3.65603 3.91529 3.97412 4.05818 4.08776 4.18698 4.25064 4.33017 4.45300 4.53312 4.63799 4.70081 4.71546 4.74539 4.89102 5.01055 5.15935 5.26039 5.29985 5.32376 5.40746 5.49739 5.83917 5.97860 6.28398 6.29787 6.52293 7.12933 7.15485 7.29173 8.65060 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015826 B = 0.007721 C = 0.006417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.846611 B = 3625.803514 C = 4362.279420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C 0.159 3.841 4 N -0.510 5.510 5 C -0.042 4.042 6 C 0.020 3.980 7 C -0.201 4.201 8 C 0.492 3.508 9 O -0.539 6.539 10 O -0.367 6.367 11 C 0.216 3.784 12 H 0.039 0.961 13 C -0.517 4.517 14 H 0.045 0.955 15 C 0.037 3.963 16 N -0.921 5.921 17 Si 0.916 3.084 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.208 1.208 21 C -0.171 4.171 22 C -0.162 4.162 23 C -0.178 4.178 24 C -0.004 4.004 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.209 0.791 29 H 0.191 0.809 30 H 0.176 0.824 31 H 0.272 0.728 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.847 -15.600 -3.991 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.140 5.140 3 C -0.124 4.124 4 N -0.228 5.228 5 C -0.168 4.168 6 C 0.001 3.999 7 C -0.221 4.221 8 C 0.340 3.660 9 O -0.432 6.432 10 O -0.284 6.284 11 C 0.163 3.837 12 H 0.057 0.943 13 C -0.554 4.554 14 H 0.063 0.937 15 C -0.165 4.165 16 N -0.559 5.559 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.130 1.130 21 C -0.190 4.190 22 C -0.199 4.199 23 C -0.215 4.215 24 C -0.140 4.140 25 H 0.115 0.885 26 H 0.123 0.877 27 H 0.113 0.887 28 H 0.226 0.774 29 H 0.208 0.792 30 H 0.193 0.807 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -15.627 -14.820 -3.873 21.883 hybrid contribution -0.834 0.594 -0.111 1.030 sum -16.462 -14.226 -3.984 22.119 Atomic orbital electron populations 1.22382 0.73568 1.06169 1.05169 1.45622 1.09368 1.05832 1.53156 1.25193 0.85515 0.94524 1.07207 1.70817 1.20990 1.12308 1.18683 1.20104 0.94481 0.90113 1.12142 1.21933 0.87740 0.94858 0.95376 1.21862 1.04038 0.99036 0.97152 1.20672 0.81742 0.81902 0.81655 1.90703 1.29238 1.72613 1.50645 1.86606 1.42580 1.41465 1.57751 1.19794 0.96306 0.84020 0.83566 0.94312 1.21055 0.99283 0.99282 1.35781 0.93715 1.25905 1.02758 0.94684 0.93183 1.70013 1.38091 1.10247 1.37508 0.86171 0.80400 0.82430 0.77084 1.20341 1.21132 1.13021 1.22600 0.97580 1.04051 0.94729 1.22893 1.00430 0.98938 0.97593 1.23167 1.02877 0.91562 1.03852 1.23072 0.89143 0.93963 1.07860 0.88513 0.87703 0.88684 0.77442 0.79217 0.80712 0.91909 0.88658 0.86501 0.90400 0.89250 0.87008 0.76700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 11.16 127.77 1.43 2.15 16 2 N -0.46 -10.44 3.14 -550.90 -1.73 -12.17 16 3 C 0.16 4.99 12.55 180.09 2.26 7.25 16 4 N -0.51 -20.19 9.06 -189.05 -1.71 -21.90 16 5 C -0.04 -1.35 5.13 40.40 0.21 -1.14 16 6 C 0.02 0.55 10.18 23.81 0.24 0.79 16 7 C -0.20 -6.68 9.90 22.40 0.22 -6.46 16 8 C 0.49 22.00 5.96 68.62 0.41 22.41 16 9 O -0.54 -25.52 12.40 19.22 0.24 -25.28 16 10 O -0.37 -19.16 9.73 -58.75 -0.57 -19.73 16 11 C 0.22 11.65 1.79 29.85 0.05 11.71 16 12 H 0.04 2.19 3.92 -2.39 -0.01 2.18 16 13 C -0.52 -32.20 9.24 25.60 0.24 -31.96 16 14 H 0.04 3.00 8.06 -2.91 -0.02 2.98 16 15 C 0.04 2.28 5.47 84.66 0.46 2.74 16 16 N -0.92 -59.65 13.96 21.45 0.30 -59.35 16 17 Si 0.92 48.33 27.23 68.60 1.87 50.20 16 18 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 20 H -0.21 -10.97 4.99 99.48 0.50 -10.48 16 21 C -0.17 -7.87 5.32 -10.79 -0.06 -7.93 16 22 C -0.16 -6.30 10.18 30.62 0.31 -5.99 16 23 C -0.18 -6.81 9.81 30.62 0.30 -6.51 16 24 C 0.00 -0.10 11.53 83.70 0.97 0.86 16 25 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.21 5.59 8.06 -2.91 -0.02 5.57 16 29 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 30 H 0.18 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 32 H 0.10 4.38 8.14 -2.39 -0.02 4.36 16 33 H 0.12 3.79 8.14 -2.39 -0.02 3.77 16 34 H 0.08 3.18 8.09 -2.38 -0.02 3.16 16 35 H 0.09 3.73 5.54 -2.39 -0.01 3.72 16 36 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.22 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -86.90 317.94 6.29 -80.61 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.86 Total: 19.69 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 7.04 Total: -12.07 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -3.15 Total: -93.42 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -0.33 Total: -45.01 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.87 Total: 50.20 kcal Total: -86.90 6.29 -80.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.900 kcal (2) G-P(sol) polarization free energy of solvation -86.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds