Wall clock time and date at job start Mon Mar 30 2020 20:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35868 * 126.17388 * 2 1 4 4 N 1.30166 * 109.11632 * 180.02562 * 3 2 1 5 5 C 1.35823 * 109.00817 * 359.97438 * 4 3 2 6 6 C 1.46723 * 126.24468 * 179.97438 * 5 4 3 7 7 C 1.35302 * 120.00588 * 6.66852 * 6 5 4 8 8 C 1.41504 * 119.99901 * 23.74819 * 7 6 5 9 9 O 1.21691 * 119.99824 * 7.05269 * 8 7 6 10 10 O 1.34956 * 120.00142 * 187.05348 * 8 7 6 11 11 C 1.42900 * 117.00005 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47396 * 29.99466 * 11 10 8 13 13 C 1.50695 * 109.47394 * 150.00106 * 11 10 8 14 14 H 1.07994 * 120.00254 * 359.71907 * 13 11 10 15 15 C 1.37884 * 120.00223 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99613 * 359.71784 * 15 13 11 17 17 Si 1.86797 * 120.00153 * 179.72219 * 15 13 11 18 18 H 1.48504 * 109.47392 * 59.99796 * 17 15 13 19 19 H 1.48500 * 109.46822 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46944 * 299.99714 * 17 15 13 21 21 C 1.53004 * 109.46752 * 269.99930 * 11 10 8 22 22 C 1.52995 * 117.50291 * 128.74705 * 21 11 10 23 23 C 1.52998 * 117.50238 * 60.08593 * 21 11 10 24 24 C 1.36023 * 126.17576 * 180.28860 * 2 1 3 25 25 H 1.08998 * 109.47133 * 89.97343 * 1 2 3 26 26 H 1.09008 * 109.47078 * 209.97679 * 1 2 3 27 27 H 1.09003 * 109.46635 * 329.97291 * 1 2 3 28 28 H 1.07995 * 125.44101 * 359.96340 * 3 2 1 29 29 H 1.08000 * 119.99919 * 186.67082 * 6 5 4 30 30 H 1.07999 * 120.00194 * 203.74797 * 7 6 5 31 31 H 0.96996 * 120.00031 * 180.02562 * 16 15 13 32 32 H 1.09006 * 115.54566 * 274.41104 * 21 11 10 33 33 H 1.09002 * 117.49645 * 359.97438 * 22 21 11 34 34 H 1.09005 * 117.50085 * 145.01555 * 22 21 11 35 35 H 1.09002 * 117.50010 * 214.98285 * 23 21 11 36 36 H 1.08994 * 117.49353 * 359.97438 * 23 21 11 37 37 H 1.08009 * 126.63721 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2670 1.0968 0.0000 4 7 3.5114 0.7149 -0.0006 5 6 3.5576 -0.6425 -0.0004 6 6 4.7698 -1.4692 -0.0013 7 6 5.9846 -0.8890 0.1335 8 6 6.0995 0.3748 0.7596 9 8 5.1286 0.8814 1.2903 10 8 7.2857 1.0183 0.7682 11 6 7.3293 2.2899 1.4187 12 1 6.5981 2.3099 2.2268 13 6 8.7078 2.5186 1.9829 14 1 9.4728 1.7661 1.8612 15 6 8.9908 3.6860 2.6599 16 7 8.0591 4.6022 2.8085 17 14 10.6973 3.9662 3.3659 18 1 11.6979 3.9361 2.2690 19 1 10.7429 5.2882 4.0407 20 1 11.0080 2.8972 4.3487 21 6 7.0027 3.3911 0.4080 22 6 5.9157 4.3987 0.7876 23 6 5.6367 3.3370 -0.2791 24 6 2.2679 -1.0980 -0.0055 25 1 -0.3633 0.0005 -1.0276 26 1 -0.3634 -0.8903 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 1.9263 2.1216 -0.0006 29 1 4.6923 -2.5409 -0.1097 30 1 6.8666 -1.3903 -0.2368 31 1 8.2581 5.4236 3.2844 32 1 7.8463 3.7575 -0.1771 33 1 5.4330 4.2768 1.7572 34 1 6.0440 5.4278 0.4519 35 1 5.5816 3.6679 -1.3162 36 1 4.9710 2.5166 -0.0114 37 1 1.9488 -2.1298 -0.0111 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:10 Heat of formation + Delta-G solvation = 56.870856 kcal Electronic energy + Delta-G solvation = -21576.544016 eV Core-core repulsion = 18323.277348 eV Total energy + Delta-G solvation = -3253.266669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.71281 -39.28326 -36.34696 -34.75913 -33.97747 -32.50072 -32.42782 -29.27261 -27.72983 -26.79224 -24.16160 -22.67326 -21.07073 -20.98758 -20.76737 -19.08609 -18.38437 -17.37050 -16.39793 -16.32873 -15.62191 -15.12714 -14.75731 -14.38440 -14.19612 -13.93145 -13.60943 -13.07024 -12.98658 -12.91064 -12.66920 -12.28584 -11.94730 -11.17235 -11.11104 -10.90091 -10.78262 -10.22567 -10.13908 -9.94552 -9.57018 -9.53701 -9.36769 -8.97023 -8.71593 -8.55390 -8.32734 -8.16704 -7.66899 -5.95963 -4.02601 1.11084 2.35249 2.82758 3.37746 3.40642 3.43822 3.73075 4.17035 4.25148 4.53599 4.58121 4.72369 4.88657 4.89415 5.13374 5.31543 5.31885 5.34703 5.45279 5.81224 6.05932 6.25490 6.28989 6.46029 6.48061 6.60325 6.77879 6.87747 6.97385 7.08267 7.27761 7.32628 7.57107 7.64442 7.76857 7.87471 8.15189 8.34924 8.46352 8.96242 9.30805 9.62392 11.10614 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029905 B = 0.004837 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.078590 B = 5786.925621 C = 6342.180119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.472 5.472 3 C 0.170 3.830 4 N -0.400 5.400 5 C 0.004 3.996 6 C 0.002 3.998 7 C -0.178 4.178 8 C 0.470 3.530 9 O -0.471 6.471 10 O -0.354 6.354 11 C 0.249 3.751 12 H 0.042 0.958 13 C -0.524 4.524 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.874 5.874 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.114 4.114 22 C -0.129 4.129 23 C -0.233 4.233 24 C -0.027 4.027 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.201 0.799 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.082 -10.767 -6.772 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.156 5.156 3 C -0.113 4.113 4 N -0.116 5.116 5 C -0.123 4.123 6 C -0.018 4.018 7 C -0.198 4.198 8 C 0.315 3.685 9 O -0.359 6.359 10 O -0.271 6.271 11 C 0.196 3.804 12 H 0.060 0.940 13 C -0.562 4.562 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.510 5.510 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.133 4.133 22 C -0.166 4.166 23 C -0.270 4.270 24 C -0.163 4.163 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.217 0.783 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.144 0.856 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.840 -9.820 -6.497 18.944 hybrid contribution 0.120 0.031 0.459 0.476 sum -14.720 -9.788 -6.038 18.680 Atomic orbital electron populations 1.21988 0.77176 1.04450 1.03192 1.45470 1.07340 1.07130 1.55656 1.25422 0.85729 0.93230 1.06949 1.71167 1.16858 1.10168 1.13446 1.19571 0.91627 0.90661 1.10423 1.21468 0.89390 0.97171 0.93756 1.21485 0.98538 0.96362 1.03448 1.19785 0.82386 0.85746 0.80595 1.90845 1.36959 1.66589 1.41515 1.86171 1.33435 1.35860 1.71598 1.19579 0.97916 0.73988 0.88956 0.94024 1.20950 0.95963 1.03710 1.35580 0.91665 1.24871 0.97426 0.95549 0.95739 1.70061 1.32527 1.07727 1.40704 0.86493 0.84086 0.77205 0.79203 1.20139 1.21275 1.20190 1.22525 0.89899 1.00535 1.00344 1.22288 1.03286 0.93088 0.97941 1.23596 1.03192 1.04562 0.95675 1.22716 0.90945 0.92423 1.10184 0.90824 0.90051 0.89543 0.78282 0.84227 0.84578 0.92905 0.90144 0.89793 0.91577 0.92167 0.85566 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.16 59.85 0.67 1.11 16 2 N -0.47 -5.25 3.14 -125.48 -0.39 -5.65 16 3 C 0.17 2.45 12.55 -89.89 -1.13 1.32 16 4 N -0.40 -7.37 5.96 -11.11 -0.07 -7.44 16 5 C 0.00 0.06 6.18 -83.20 -0.51 -0.45 16 6 C 0.00 0.03 10.07 -37.20 -0.37 -0.35 16 7 C -0.18 -3.08 9.94 -39.38 -0.39 -3.47 16 8 C 0.47 10.76 6.48 31.98 0.21 10.97 16 9 O -0.47 -11.53 9.67 -19.41 -0.19 -11.71 16 10 O -0.35 -9.21 9.71 -41.20 -0.40 -9.61 16 11 C 0.25 7.08 2.21 -27.88 -0.06 7.01 16 12 H 0.04 1.31 6.87 -51.93 -0.36 0.95 16 13 C -0.52 -15.51 8.86 -34.44 -0.31 -15.81 16 14 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.07 1.94 5.31 -17.82 -0.09 1.84 16 16 N -0.87 -25.58 11.42 55.43 0.63 -24.94 16 17 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -3.05 4.46 -90.62 -0.40 -3.45 16 22 C -0.13 -3.22 9.04 -26.70 -0.24 -3.46 16 23 C -0.23 -5.54 9.79 -26.70 -0.26 -5.80 16 24 C -0.03 -0.32 11.53 -16.22 -0.19 -0.51 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.20 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 30 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 2.23 8.11 -51.93 -0.42 1.81 16 33 H 0.08 2.23 8.05 -51.93 -0.42 1.82 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.13 3.02 3.98 -51.93 -0.21 2.81 16 37 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 314.41 15.07 4.74 4.74 Total: -1.00 -36.13 314.41 -8.54 -44.67 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.75 Total: 4.05 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.09 Total: -11.06 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.17 Total: -38.02 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.59 Total: -21.32 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.13 -8.54 -44.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.541 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds