Wall clock time and date at job start Mon Mar 30 2020 20:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00348 * 2 1 4 4 N 1.46496 * 109.46897 * 123.71575 * 3 2 1 5 5 C 1.46502 * 120.00064 * 264.44263 * 4 3 2 6 6 C 1.50695 * 109.47580 * 270.00085 * 5 4 3 7 7 H 1.08003 * 119.99417 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00269 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47084 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47171 * 119.99832 * 10 8 6 13 13 H 1.48501 * 109.46972 * 240.00016 * 10 8 6 14 14 C 1.34778 * 120.00227 * 84.44660 * 4 3 2 15 15 O 1.21592 * 120.00278 * 183.99310 * 14 4 3 16 16 C 1.47421 * 119.99687 * 3.98886 * 14 4 3 17 17 C 1.38002 * 125.84794 * 335.79501 * 16 14 4 18 18 C 1.39316 * 107.52682 * 179.97438 * 17 16 14 19 19 C 1.38340 * 107.41118 * 359.97438 * 18 17 16 20 20 C 1.46429 * 125.95533 * 180.02562 * 19 18 17 21 21 O 1.21340 * 120.00544 * 179.97438 * 20 19 18 22 22 N 1.36610 * 125.85089 * 155.78942 * 16 14 4 23 23 C 1.46497 * 125.66704 * 359.97266 * 22 16 14 24 24 H 1.08010 * 119.99959 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00488 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99667 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46833 * 3.71881 * 3 2 1 28 28 H 1.08995 * 109.47453 * 243.72164 * 3 2 1 29 29 H 1.09003 * 109.47186 * 30.00626 * 5 4 3 30 30 H 1.09001 * 109.47061 * 150.00167 * 5 4 3 31 31 H 0.97004 * 120.00583 * 179.97438 * 9 8 6 32 32 H 1.07997 * 126.23686 * 0.25741 * 17 16 14 33 33 H 1.08007 * 126.29557 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.99587 * 359.97438 * 20 19 18 35 35 H 1.09008 * 109.46604 * 265.34515 * 23 22 16 36 36 H 1.08999 * 109.47205 * 25.34187 * 23 22 16 37 37 H 1.08994 * 109.47578 * 145.34599 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9716 1.3445 1.1489 5 6 2.5543 2.0012 2.3902 6 6 2.9504 3.4545 2.3475 7 1 3.4615 3.8497 1.4820 8 6 2.6604 4.2797 3.4133 9 7 2.0375 3.7987 4.4670 10 14 3.1507 6.0814 3.3600 11 1 3.8336 6.3708 2.0734 12 1 1.9368 6.9286 3.4782 13 1 4.0723 6.3771 4.4864 14 6 4.1910 0.7768 1.0639 15 8 4.9164 0.7455 2.0392 16 6 4.6453 0.1937 -0.2116 17 6 3.8301 -0.2669 -1.2254 18 6 4.6543 -0.7343 -2.2468 19 6 5.9634 -0.5504 -1.8393 20 6 7.1602 -0.9017 -2.6065 21 8 8.2616 -0.6915 -2.1428 22 7 5.9452 0.0169 -0.5926 23 6 7.1239 0.3764 0.1996 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3571 2.1325 0.0667 28 1 2.6392 1.3923 -0.9214 29 1 1.4724 1.9224 2.4970 30 1 3.0392 1.5173 3.2380 31 1 1.8338 4.3792 5.2170 32 1 2.7502 -0.2615 -1.2286 33 1 4.3306 -1.1616 -3.1845 34 1 7.0624 -1.3481 -3.5851 35 1 7.4677 1.3693 -0.0906 36 1 6.8639 0.3769 1.2582 37 1 7.9171 -0.3494 0.0207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298470767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:33 Heat of formation + Delta-G solvation = 23.388174 kcal Electronic energy + Delta-G solvation = -21373.698892 eV Core-core repulsion = 18118.980305 eV Total energy + Delta-G solvation = -3254.718587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49978 -39.05667 -38.16924 -36.09047 -33.37452 -32.72680 -32.13256 -30.15191 -27.61161 -26.61743 -25.64643 -24.68140 -22.61838 -21.25645 -20.22612 -19.77962 -18.48960 -17.10189 -16.59427 -15.99319 -15.85327 -15.56052 -15.30331 -14.94337 -14.43325 -14.23077 -13.80218 -13.58667 -13.41807 -13.32151 -12.73430 -12.41420 -12.08752 -12.07856 -11.89382 -11.46479 -11.24130 -11.08044 -10.86427 -10.66788 -10.24750 -10.02477 -9.70387 -9.28912 -9.20227 -8.71062 -8.49325 -8.20401 -7.79181 -6.10219 -4.15603 0.93739 2.18774 2.32484 2.71780 3.08494 3.26241 3.34079 3.37915 3.72527 3.95189 4.18449 4.39936 4.88061 4.99827 5.12917 5.18844 5.24514 5.29290 5.35730 5.42858 5.49320 5.65924 5.88324 5.95441 6.00811 6.10767 6.18191 6.59623 6.73995 6.85743 6.94968 7.01268 7.07340 7.34962 7.37641 7.44388 7.85696 8.14903 8.23749 8.76647 8.93465 9.49764 10.97828 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.005580 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.395778 B = 5016.928678 C = 6094.170327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.181 4.181 3 C 0.121 3.879 4 N -0.572 5.572 5 C 0.247 3.753 6 C -0.530 4.530 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.571 3.429 15 O -0.540 6.540 16 C 0.016 3.984 17 C -0.197 4.197 18 C -0.132 4.132 19 C -0.099 4.099 20 C 0.407 3.593 21 O -0.477 6.477 22 N -0.374 5.374 23 C 0.055 3.945 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.264 0.736 32 H 0.175 0.825 33 H 0.151 0.849 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -9.539 -15.070 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.002 4.002 4 N -0.302 5.302 5 C 0.129 3.871 6 C -0.568 4.568 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.357 3.643 15 O -0.419 6.419 16 C -0.106 4.106 17 C -0.220 4.220 18 C -0.158 4.158 19 C -0.213 4.213 20 C 0.268 3.732 21 O -0.351 6.351 22 N -0.045 5.045 23 C -0.086 4.086 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.192 0.808 33 H 0.169 0.831 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.130 0.870 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.355 -9.253 -13.875 16.843 hybrid contribution 0.029 1.003 0.028 1.004 sum 2.384 -8.250 -13.848 16.294 Atomic orbital electron populations 1.23880 0.95773 1.01928 0.99474 1.23511 0.96450 0.99312 1.00762 1.21055 0.93536 0.95362 0.90286 1.47978 1.12953 1.53227 1.16000 1.19398 0.95835 0.91924 0.79973 1.21449 1.38396 0.93874 1.03121 0.92338 1.24919 0.94970 0.98978 0.95074 1.69940 1.40762 1.35967 1.06440 0.86441 0.78272 0.84562 0.78151 1.19805 1.20849 1.20840 1.17147 0.82748 0.78880 0.85536 1.90725 1.54416 1.58974 1.37807 1.20912 0.83725 1.07839 0.98122 1.22404 1.01051 1.05256 0.93336 1.21399 0.90366 1.03815 1.00227 1.21601 0.97743 1.12535 0.89400 1.23324 0.85160 0.74423 0.90300 1.90543 1.29314 1.44090 1.71171 1.43923 1.06115 1.41521 1.12963 1.22551 0.85681 1.02143 0.98201 0.88176 0.88563 0.86733 0.89161 0.89199 0.94449 0.93514 0.92671 0.80802 0.83132 0.86092 0.90539 0.87001 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 14.32 29.02 0.42 -1.64 16 2 C -0.18 -2.44 7.73 -36.02 -0.28 -2.72 16 3 C 0.12 1.95 5.41 -5.19 -0.03 1.92 16 4 N -0.57 -12.07 2.45 -177.71 -0.44 -12.51 16 5 C 0.25 6.35 5.17 -5.20 -0.03 6.32 16 6 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 7 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 10 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.57 12.24 7.51 -12.52 -0.09 12.14 16 15 O -0.54 -13.45 14.34 5.29 0.08 -13.38 16 16 C 0.02 0.27 6.50 -82.09 -0.53 -0.26 16 17 C -0.20 -2.70 7.81 -39.27 -0.31 -3.01 16 18 C -0.13 -1.50 10.84 -39.14 -0.42 -1.92 16 19 C -0.10 -1.29 6.86 -82.23 -0.56 -1.85 16 20 C 0.41 4.30 11.66 34.03 0.40 4.70 16 21 O -0.48 -6.70 15.53 5.51 0.09 -6.61 16 22 N -0.37 -6.07 3.17 -115.96 -0.37 -6.43 16 23 C 0.05 0.86 10.22 59.85 0.61 1.47 16 24 H 0.10 1.17 7.84 -52.48 -0.41 0.76 16 25 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 26 H 0.11 1.49 6.69 -52.49 -0.35 1.13 16 27 H 0.09 1.48 7.68 -51.93 -0.40 1.08 16 28 H 0.09 1.30 5.27 -51.93 -0.27 1.03 16 29 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 30 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.18 2.11 3.14 -52.49 -0.17 1.95 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.11 1.98 5.90 -51.93 -0.31 1.67 16 37 H 0.09 1.35 6.55 -51.93 -0.34 1.01 16 LS Contribution 315.44 15.07 4.75 4.75 Total: -1.00 -33.72 315.44 -5.71 -39.43 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.28 Total: 1.78 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.25 Total: 1.76 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.07 Total: -44.29 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.16 Total: -19.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.72 -5.71 -39.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298470767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.819 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds