Wall clock time and date at job start Mon Mar 30 2020 20:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00348 * 2 1 4 4 N 1.46496 * 109.46897 * 123.71575 * 3 2 1 5 5 C 1.46502 * 120.00064 * 264.44263 * 4 3 2 6 6 C 1.50695 * 109.47580 * 270.00085 * 5 4 3 7 7 H 1.08003 * 119.99417 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00269 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00192 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00147 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47084 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47171 * 119.99832 * 10 8 6 13 13 H 1.48501 * 109.46972 * 240.00016 * 10 8 6 14 14 C 1.34778 * 120.00227 * 84.44660 * 4 3 2 15 15 O 1.21592 * 120.00278 * 183.99310 * 14 4 3 16 16 C 1.47421 * 119.99687 * 3.98886 * 14 4 3 17 17 C 1.38002 * 125.84794 * 335.79501 * 16 14 4 18 18 C 1.39316 * 107.52682 * 179.97438 * 17 16 14 19 19 C 1.38340 * 107.41118 * 359.97438 * 18 17 16 20 20 C 1.46429 * 125.95533 * 180.02562 * 19 18 17 21 21 O 1.21340 * 120.00544 * 179.97438 * 20 19 18 22 22 N 1.36610 * 125.85089 * 155.78942 * 16 14 4 23 23 C 1.46497 * 125.66704 * 359.97266 * 22 16 14 24 24 H 1.08010 * 119.99959 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00488 * 179.97438 * 1 2 3 26 26 H 1.08001 * 119.99667 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46833 * 3.71881 * 3 2 1 28 28 H 1.08995 * 109.47453 * 243.72164 * 3 2 1 29 29 H 1.09003 * 109.47186 * 30.00626 * 5 4 3 30 30 H 1.09001 * 109.47061 * 150.00167 * 5 4 3 31 31 H 0.97004 * 120.00583 * 179.97438 * 9 8 6 32 32 H 1.07997 * 126.23686 * 0.25741 * 17 16 14 33 33 H 1.08007 * 126.29557 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.99587 * 359.97438 * 20 19 18 35 35 H 1.09008 * 109.46604 * 265.34515 * 23 22 16 36 36 H 1.08999 * 109.47205 * 25.34187 * 23 22 16 37 37 H 1.08994 * 109.47578 * 145.34599 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9716 1.3445 1.1489 5 6 2.5543 2.0012 2.3902 6 6 2.9504 3.4545 2.3475 7 1 3.4615 3.8497 1.4820 8 6 2.6604 4.2797 3.4133 9 7 2.0375 3.7987 4.4670 10 14 3.1507 6.0814 3.3600 11 1 3.8336 6.3708 2.0734 12 1 1.9368 6.9286 3.4782 13 1 4.0723 6.3771 4.4864 14 6 4.1910 0.7768 1.0639 15 8 4.9164 0.7455 2.0392 16 6 4.6453 0.1937 -0.2116 17 6 3.8301 -0.2669 -1.2254 18 6 4.6543 -0.7343 -2.2468 19 6 5.9634 -0.5504 -1.8393 20 6 7.1602 -0.9017 -2.6065 21 8 8.2616 -0.6915 -2.1428 22 7 5.9452 0.0169 -0.5926 23 6 7.1239 0.3764 0.1996 24 1 -0.5400 0.9354 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8499 -0.9354 -0.0004 27 1 1.3571 2.1325 0.0667 28 1 2.6392 1.3923 -0.9214 29 1 1.4724 1.9224 2.4970 30 1 3.0392 1.5173 3.2380 31 1 1.8338 4.3792 5.2170 32 1 2.7502 -0.2615 -1.2286 33 1 4.3306 -1.1616 -3.1845 34 1 7.0624 -1.3481 -3.5851 35 1 7.4677 1.3693 -0.0906 36 1 6.8639 0.3769 1.2582 37 1 7.9171 -0.3494 0.0207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298470767.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:32 Heat of formation + Delta-G solvation = 1.074435 kcal Electronic energy + Delta-G solvation = -21374.666488 eV Core-core repulsion = 18118.980305 eV Total energy + Delta-G solvation = -3255.686183 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64733 -40.43738 -39.31618 -37.58790 -35.26627 -33.83899 -33.76324 -31.43134 -29.38317 -27.82441 -26.96364 -26.18270 -24.25772 -22.37264 -21.51976 -20.82846 -19.78401 -18.68693 -18.38057 -17.44250 -17.07478 -16.74117 -16.64874 -16.31168 -16.08632 -15.65938 -14.88211 -14.82675 -14.78059 -14.40969 -14.33165 -14.06764 -13.51145 -13.34286 -13.24708 -13.10097 -12.95065 -12.70465 -12.46627 -12.26973 -12.11824 -11.67475 -11.04534 -10.76415 -10.68524 -10.36047 -9.79148 -9.61707 -9.26465 -8.26374 -6.41522 -0.08892 1.05483 1.23593 1.34338 1.36489 1.48257 1.60023 2.17505 2.23451 2.36863 2.48233 3.03524 3.35922 3.54984 3.86303 4.04881 4.17399 4.19894 4.24113 4.42019 4.44910 4.49236 4.63396 4.85125 4.92067 5.03634 5.08515 5.13870 5.18200 5.45015 5.62260 5.72222 5.74422 5.85575 5.93610 6.00146 6.04818 6.50846 6.59071 6.67263 7.16653 7.32895 8.81071 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.005580 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.395778 B = 5016.928678 C = 6094.170327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.199 4.199 3 C 0.120 3.880 4 N -0.578 5.578 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.967 3.033 11 H -0.270 1.270 12 H -0.266 1.266 13 H -0.282 1.282 14 C 0.562 3.438 15 O -0.596 6.596 16 C -0.033 4.033 17 C -0.179 4.179 18 C -0.111 4.111 19 C -0.100 4.100 20 C 0.418 3.582 21 O -0.514 6.514 22 N -0.395 5.395 23 C 0.063 3.937 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.191 0.809 33 H 0.206 0.794 34 H 0.192 0.808 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -10.294 -18.837 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.218 4.218 3 C -0.002 4.002 4 N -0.307 5.307 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.791 3.209 11 H -0.194 1.194 12 H -0.191 1.191 13 H -0.207 1.207 14 C 0.351 3.649 15 O -0.479 6.479 16 C -0.152 4.152 17 C -0.204 4.204 18 C -0.136 4.136 19 C -0.213 4.213 20 C 0.280 3.720 21 O -0.390 6.390 22 N -0.067 5.067 23 C -0.078 4.078 24 H 0.119 0.881 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.048 0.952 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.208 0.792 33 H 0.223 0.777 34 H 0.208 0.792 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.623 -10.020 -17.690 20.395 hybrid contribution 0.217 1.150 1.124 1.622 sum 1.839 -8.870 -16.566 18.881 Atomic orbital electron populations 1.24138 0.95210 1.03264 0.96277 1.23303 0.96883 0.98024 1.03558 1.21292 0.92993 0.96921 0.88974 1.47925 1.14072 1.52801 1.15879 1.18816 0.94582 0.91118 0.81061 1.21676 1.38523 0.95026 1.03154 0.93091 1.25809 0.94722 1.03656 0.94539 1.70049 1.41536 1.37745 1.07092 0.85379 0.78395 0.79027 0.78069 1.19399 1.19066 1.20738 1.17807 0.82126 0.78220 0.86769 1.90677 1.55783 1.61275 1.40121 1.20464 0.85295 1.11761 0.97641 1.22700 1.01808 1.03349 0.92507 1.21976 0.88607 1.01946 1.01061 1.22586 1.00131 1.10616 0.88002 1.24357 0.83239 0.72848 0.91563 1.90554 1.30617 1.45536 1.72256 1.44085 1.05376 1.42859 1.14408 1.22342 0.86224 1.02484 0.96769 0.88091 0.85913 0.85968 0.89917 0.87392 0.95160 0.98167 0.92260 0.79240 0.77723 0.79201 0.90735 0.90036 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 14.32 67.79 0.97 -2.27 16 2 C -0.20 -5.07 7.73 25.65 0.20 -4.87 16 3 C 0.12 3.85 5.41 85.63 0.46 4.32 16 4 N -0.58 -25.66 2.45 -834.42 -2.05 -27.71 16 5 C 0.26 14.50 5.17 85.63 0.44 14.94 16 6 C -0.55 -31.72 9.39 25.60 0.24 -31.48 16 7 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 8 C 0.01 0.71 5.46 84.65 0.46 1.17 16 9 N -0.92 -55.79 13.29 21.44 0.28 -55.51 16 10 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 14 C 0.56 25.60 7.51 86.66 0.65 26.25 16 15 O -0.60 -32.41 14.34 -4.00 -0.06 -32.46 16 16 C -0.03 -1.15 6.50 40.76 0.27 -0.89 16 17 C -0.18 -4.47 7.81 22.47 0.18 -4.30 16 18 C -0.11 -1.98 10.84 22.55 0.24 -1.73 16 19 C -0.10 -2.28 6.86 40.50 0.28 -2.00 16 20 C 0.42 7.02 11.66 69.95 0.82 7.84 16 21 O -0.51 -13.23 15.53 -3.21 -0.05 -13.28 16 22 N -0.39 -12.75 3.17 -520.80 -1.65 -14.40 16 23 C 0.06 2.09 10.22 127.77 1.31 3.40 16 24 H 0.10 2.16 7.84 -2.91 -0.02 2.14 16 25 H 0.12 2.02 8.06 -2.91 -0.02 2.00 16 26 H 0.12 2.95 6.69 -2.91 -0.02 2.93 16 27 H 0.08 2.73 7.68 -2.39 -0.02 2.71 16 28 H 0.11 3.02 5.27 -2.39 -0.01 3.01 16 29 H 0.03 1.66 8.07 -2.39 -0.02 1.65 16 30 H 0.00 0.01 7.37 -2.39 -0.02 0.00 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 32 H 0.19 4.06 3.14 -2.91 -0.01 4.05 16 33 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.07 2.39 8.14 -2.38 -0.02 2.38 16 36 H 0.08 3.19 5.90 -2.39 -0.01 3.18 16 37 H 0.10 3.13 6.55 -2.39 -0.02 3.12 16 Total: -1.00 -80.30 315.44 6.10 -74.20 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.09 Total: 11.68 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 6.51 Total: 10.38 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -3.42 Total: -97.62 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.11 Total: -45.74 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -80.30 6.10 -74.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298470767.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.272 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds