Wall clock time and date at job start Mon Mar 30 2020 20:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48491 * 109.47299 * 269.99696 * 3 2 1 5 5 H 1.48500 * 109.46781 * 29.99818 * 3 2 1 6 6 H 1.48501 * 109.46901 * 149.99544 * 3 2 1 7 7 C 1.37881 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47149 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47411 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00148 * 179.97438 * 11 10 9 13 13 O 1.21603 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.47442 * 120.00297 * 179.97438 * 12 11 10 15 15 C 1.39768 * 120.98984 * 353.96609 * 14 12 11 16 16 N 1.32200 * 118.99496 * 180.24786 * 15 14 12 17 17 C 1.31964 * 121.19982 * 0.04455 * 16 15 14 18 18 C 1.50697 * 118.88771 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.50049 * 8.72614 * 18 17 16 20 20 C 1.52995 * 117.50002 * 300.06701 * 18 17 16 21 21 N 1.31668 * 122.22405 * 359.95403 * 17 16 15 22 22 C 1.32983 * 120.84623 * 0.02562 * 21 17 16 23 23 N 1.37879 * 120.63965 * 179.97438 * 22 21 17 24 24 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47077 * 60.00491 * 9 7 2 26 26 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 27 27 H 1.09002 * 109.47026 * 59.99687 * 10 9 7 28 28 H 1.09005 * 109.46941 * 300.00542 * 10 9 7 29 29 H 0.97000 * 119.99488 * 0.02562 * 11 10 9 30 30 H 1.08001 * 120.49802 * 0.24599 * 15 14 12 31 31 H 1.09004 * 115.54909 * 154.39623 * 18 17 16 32 32 H 1.09004 * 117.49845 * 0.02562 * 19 18 17 33 33 H 1.08998 * 117.50172 * 145.01703 * 19 18 17 34 34 H 1.09006 * 117.50132 * 214.97725 * 20 18 17 35 35 H 1.09005 * 117.49947 * 359.97438 * 20 18 17 36 36 H 0.96997 * 119.99777 * 335.75660 * 23 22 21 37 37 H 0.97001 * 119.99511 * 155.75824 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0009 12 6 6.1603 -3.8040 0.0014 13 8 5.5522 -4.8571 0.0013 14 6 7.6347 -3.8041 0.0007 15 6 8.3544 -2.6127 -0.1262 16 7 9.6756 -2.6591 -0.1269 17 6 10.3194 -3.8052 -0.0112 18 6 11.8264 -3.7976 -0.0188 19 6 12.5264 -2.4386 0.0444 20 6 12.5238 -3.2387 -1.2605 21 7 9.6897 -4.9550 0.1110 22 6 8.3609 -5.0069 0.1223 23 7 7.7058 -6.2134 0.2500 24 1 -0.4850 0.8400 -0.0004 25 1 3.8744 -0.6802 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8907 29 1 5.9714 -1.7967 0.0014 30 1 7.8389 -1.6685 -0.2224 31 1 12.3032 -4.6337 0.4928 32 1 11.8969 -1.5500 0.0919 33 1 13.4639 -2.3806 0.5973 34 1 13.4597 -3.7067 -1.5657 35 1 11.8926 -2.8768 -2.0723 36 1 8.1479 -7.0355 -0.0137 37 1 6.8029 -6.2399 0.6036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287622708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:05 Heat of formation + Delta-G solvation = 33.831145 kcal Electronic energy + Delta-G solvation = -20275.182434 eV Core-core repulsion = 17053.209439 eV Total energy + Delta-G solvation = -3221.972994 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37739 -39.24763 -37.34608 -35.79941 -34.82567 -33.17080 -32.73128 -31.03961 -29.72169 -26.21994 -24.68663 -23.99399 -22.61791 -21.68686 -20.90353 -20.58065 -18.47798 -17.80178 -17.26129 -16.94674 -16.17997 -15.89322 -15.34546 -15.05289 -14.80854 -14.47434 -14.24239 -14.07011 -13.64452 -13.30855 -12.65419 -12.45455 -12.02469 -11.76582 -11.60012 -11.53953 -11.28740 -11.10487 -10.76965 -10.46514 -10.36253 -10.01014 -9.87497 -9.63425 -9.42472 -9.36092 -8.83156 -8.65151 -8.45274 -6.14832 -4.15511 0.42766 1.15388 2.85142 3.07240 3.22986 3.30828 3.31659 3.43494 3.46212 3.70299 3.91825 4.08767 4.34449 4.57221 4.59068 4.73734 4.76904 4.87566 5.15471 5.18081 5.31369 5.37057 5.54673 5.78924 5.94381 6.00768 6.08986 6.12100 6.47909 6.54209 6.66363 7.03444 7.10929 7.16436 7.51247 7.61606 7.71544 8.07538 8.33933 8.41376 8.88978 9.45008 10.98137 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.003574 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.140506 B = 7832.390322 C = 8887.355305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.130 3.870 11 N -0.717 5.717 12 C 0.571 3.429 13 O -0.551 6.551 14 C -0.310 4.310 15 C 0.217 3.783 16 N -0.560 5.560 17 C 0.406 3.594 18 C -0.106 4.106 19 C -0.151 4.151 20 C -0.154 4.154 21 N -0.577 5.577 22 C 0.488 3.512 23 N -0.816 5.816 24 H 0.265 0.735 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.395 0.605 30 H 0.170 0.830 31 H 0.129 0.871 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.404 0.596 37 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.409 -6.479 -0.197 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.094 0.906 9 C -0.061 4.061 10 C 0.008 3.992 11 N -0.366 5.366 12 C 0.358 3.642 13 O -0.431 6.431 14 C -0.325 4.325 15 C 0.051 3.949 16 N -0.278 5.278 17 C 0.138 3.862 18 C -0.126 4.126 19 C -0.189 4.189 20 C -0.192 4.192 21 N -0.301 5.301 22 C 0.240 3.760 23 N -0.365 5.365 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.187 0.813 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 24.642 -7.117 -0.173 25.650 hybrid contribution -0.668 0.924 0.040 1.141 sum 23.974 -6.192 -0.132 24.762 Atomic orbital electron populations 1.69899 1.06314 1.27127 1.50240 1.25003 0.94771 0.99185 0.94300 0.86754 0.80280 0.83509 0.78560 1.20167 1.21231 1.19033 1.20893 0.88551 0.94921 1.51896 0.90600 1.19810 0.98117 0.91191 0.96949 1.21582 0.75272 1.00414 1.01887 1.46188 1.09434 1.07434 1.73517 1.17625 0.85497 0.84499 0.76625 1.90581 1.69536 1.30933 1.52034 1.21210 0.95784 0.95665 1.19794 1.23237 0.89330 0.97002 0.85282 1.68098 1.09276 1.29348 1.21113 1.21946 0.95523 0.82813 0.85898 1.20670 0.86165 1.00247 1.05543 1.23052 1.01592 0.94486 0.99747 1.22995 1.01683 1.02934 0.91598 1.67808 1.07575 1.30698 1.23997 1.18337 0.87350 0.86579 0.83748 1.42583 1.20273 1.04746 1.68854 0.92495 0.95898 0.96336 0.91640 0.91624 0.77042 0.81259 0.85350 0.86896 0.88187 0.87933 0.88398 0.76666 0.73336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.85 6.54 56.52 0.37 -5.48 16 7 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 8 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.53 5.61 -4.04 -0.02 2.51 16 11 N -0.72 -11.24 5.51 -61.38 -0.34 -11.57 16 12 C 0.57 9.07 7.75 -12.51 -0.10 8.97 16 13 O -0.55 -9.97 14.01 5.28 0.07 -9.89 16 14 C -0.31 -4.27 5.92 -104.52 -0.62 -4.89 16 15 C 0.22 2.61 10.79 -16.82 -0.18 2.43 16 16 N -0.56 -6.89 9.30 -10.45 -0.10 -6.99 16 17 C 0.41 4.98 7.31 -157.16 -1.15 3.84 16 18 C -0.11 -0.97 6.23 -91.77 -0.57 -1.54 16 19 C -0.15 -1.13 10.01 -26.69 -0.27 -1.40 16 20 C -0.15 -1.15 10.24 -26.70 -0.27 -1.42 16 21 N -0.58 -7.59 10.35 -9.75 -0.10 -7.69 16 22 C 0.49 6.62 7.83 -154.88 -1.21 5.41 16 23 N -0.82 -9.56 8.55 31.39 0.27 -9.29 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.40 5.12 6.64 -40.82 -0.27 4.85 16 30 H 0.17 1.57 6.57 -52.49 -0.34 1.23 16 31 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.11 0.97 7.53 -51.93 -0.39 0.58 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.74 8.95 -40.82 -0.37 3.38 16 37 H 0.43 5.39 6.26 -40.82 -0.26 5.13 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -32.07 316.74 -8.77 -40.84 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.52 Total: 9.59 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -4.94 Total: 0.44 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.51 Total: -61.76 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.07 -8.77 -40.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287622708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.674 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds