Wall clock time and date at job start Mon Mar 30 2020 20:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00304 * 2 1 4 4 H 1.48491 * 109.47299 * 269.99696 * 3 2 1 5 5 H 1.48500 * 109.46781 * 29.99818 * 3 2 1 6 6 H 1.48501 * 109.46901 * 149.99544 * 3 2 1 7 7 C 1.37881 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47149 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47411 * 179.97438 * 10 9 7 12 12 C 1.34774 * 120.00148 * 179.97438 * 11 10 9 13 13 O 1.21603 * 120.00025 * 0.02562 * 12 11 10 14 14 C 1.47442 * 120.00297 * 179.97438 * 12 11 10 15 15 C 1.39768 * 120.98984 * 353.96609 * 14 12 11 16 16 N 1.32200 * 118.99496 * 180.24786 * 15 14 12 17 17 C 1.31964 * 121.19982 * 0.04455 * 16 15 14 18 18 C 1.50697 * 118.88771 * 179.97438 * 17 16 15 19 19 C 1.53002 * 117.50049 * 8.72614 * 18 17 16 20 20 C 1.52995 * 117.50002 * 300.06701 * 18 17 16 21 21 N 1.31668 * 122.22405 * 359.95403 * 17 16 15 22 22 C 1.32983 * 120.84623 * 0.02562 * 21 17 16 23 23 N 1.37879 * 120.63965 * 179.97438 * 22 21 17 24 24 H 0.96996 * 119.99945 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47077 * 60.00491 * 9 7 2 26 26 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 27 27 H 1.09002 * 109.47026 * 59.99687 * 10 9 7 28 28 H 1.09005 * 109.46941 * 300.00542 * 10 9 7 29 29 H 0.97000 * 119.99488 * 0.02562 * 11 10 9 30 30 H 1.08001 * 120.49802 * 0.24599 * 15 14 12 31 31 H 1.09004 * 115.54909 * 154.39623 * 18 17 16 32 32 H 1.09004 * 117.49845 * 0.02562 * 19 18 17 33 33 H 1.08998 * 117.50172 * 145.01703 * 19 18 17 34 34 H 1.09006 * 117.50132 * 214.97725 * 20 18 17 35 35 H 1.09005 * 117.49947 * 359.97438 * 20 18 17 36 36 H 0.96997 * 119.99777 * 335.75660 * 23 22 21 37 37 H 0.97001 * 119.99511 * 155.75824 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0009 12 6 6.1603 -3.8040 0.0014 13 8 5.5522 -4.8571 0.0013 14 6 7.6347 -3.8041 0.0007 15 6 8.3544 -2.6127 -0.1262 16 7 9.6756 -2.6591 -0.1269 17 6 10.3194 -3.8052 -0.0112 18 6 11.8264 -3.7976 -0.0188 19 6 12.5264 -2.4386 0.0444 20 6 12.5238 -3.2387 -1.2605 21 7 9.6897 -4.9550 0.1110 22 6 8.3609 -5.0069 0.1223 23 7 7.7058 -6.2134 0.2500 24 1 -0.4850 0.8400 -0.0004 25 1 3.8744 -0.6802 0.8911 26 1 3.8752 -0.6805 -0.8888 27 1 3.6584 -3.1503 -0.8892 28 1 3.6577 -3.1507 0.8907 29 1 5.9714 -1.7967 0.0014 30 1 7.8389 -1.6685 -0.2224 31 1 12.3032 -4.6337 0.4928 32 1 11.8969 -1.5500 0.0919 33 1 13.4639 -2.3806 0.5973 34 1 13.4597 -3.7067 -1.5657 35 1 11.8926 -2.8768 -2.0723 36 1 8.1479 -7.0355 -0.0137 37 1 6.8029 -6.2399 0.6036 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287622708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:04 Heat of formation + Delta-G solvation = 11.121982 kcal Electronic energy + Delta-G solvation = -20276.167177 eV Core-core repulsion = 17053.209439 eV Total energy + Delta-G solvation = -3222.957738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.35605 -40.46644 -38.09735 -36.96589 -36.13221 -34.82269 -33.97539 -32.43089 -31.11877 -27.45970 -26.18206 -24.94668 -23.17665 -22.89489 -22.44531 -21.70577 -19.47647 -18.95998 -18.85503 -18.28553 -17.23957 -16.77894 -16.58560 -16.30324 -16.14211 -15.82425 -15.35295 -15.24850 -14.84167 -14.73586 -14.51427 -13.35741 -13.21972 -13.05459 -12.92098 -12.64470 -12.27261 -12.20058 -12.16772 -11.89259 -11.75278 -11.50514 -11.36469 -10.95534 -10.77866 -10.69145 -10.38373 -10.17114 -9.49224 -8.29125 -6.36343 -0.55416 0.19305 1.40977 1.43281 1.54240 1.71562 2.04049 2.27817 2.38012 2.59393 2.84192 3.06423 3.11655 3.25125 3.62883 3.74358 3.94286 3.97527 4.14557 4.33088 4.40486 4.44061 4.44847 4.76000 4.85112 4.98058 5.09309 5.13967 5.24914 5.37897 5.39248 5.41750 5.62167 5.70351 6.14450 6.22338 6.47099 6.60421 6.71929 7.09733 7.16501 7.28427 8.87600 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.003574 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.140506 B = 7832.390322 C = 8887.355305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.234 1.234 7 C -0.538 4.538 8 H 0.030 0.970 9 C -0.015 4.015 10 C 0.146 3.854 11 N -0.707 5.707 12 C 0.574 3.426 13 O -0.579 6.579 14 C -0.328 4.328 15 C 0.226 3.774 16 N -0.564 5.564 17 C 0.400 3.600 18 C -0.126 4.126 19 C -0.140 4.140 20 C -0.144 4.144 21 N -0.587 5.587 22 C 0.478 3.522 23 N -0.810 5.810 24 H 0.267 0.733 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.412 0.588 30 H 0.198 0.802 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.413 0.587 37 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.857 -4.932 -0.263 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.157 1.157 7 C -0.576 4.576 8 H 0.048 0.952 9 C -0.053 4.053 10 C 0.023 3.977 11 N -0.358 5.358 12 C 0.362 3.638 13 O -0.460 6.460 14 C -0.342 4.342 15 C 0.060 3.940 16 N -0.283 5.283 17 C 0.133 3.867 18 C -0.146 4.146 19 C -0.178 4.178 20 C -0.182 4.182 21 N -0.311 5.311 22 C 0.229 3.771 23 N -0.358 5.358 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.249 0.751 30 H 0.215 0.785 31 H 0.156 0.844 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 28.146 -5.595 -0.242 28.698 hybrid contribution -1.733 0.328 0.054 1.764 sum 26.413 -5.267 -0.189 26.934 Atomic orbital electron populations 1.70075 1.08623 1.28406 1.52065 1.26079 0.95659 1.03879 0.93728 0.85567 0.79787 0.77380 0.79340 1.19013 1.21479 1.15701 1.21253 0.91597 0.93363 1.51426 0.95160 1.19677 0.94416 0.92944 0.98245 1.21094 0.77549 0.98592 1.00460 1.45860 1.07705 1.08445 1.73755 1.17891 0.86371 0.83884 0.75684 1.90572 1.70354 1.31932 1.53181 1.21012 0.94206 0.96685 1.22291 1.23679 0.89364 0.97414 0.83552 1.68228 1.09228 1.29275 1.21549 1.22640 0.96999 0.82592 0.84490 1.20863 0.84474 1.01800 1.07438 1.23120 1.01903 0.92964 0.99816 1.23078 1.01956 1.02282 0.90879 1.67912 1.07185 1.31219 1.24825 1.18571 0.87806 0.86996 0.83726 1.42559 1.20016 1.04964 1.68255 0.92376 0.94337 0.94472 0.93299 0.93183 0.75106 0.78535 0.84392 0.88005 0.85888 0.85635 0.89493 0.75486 0.73793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 2 C 0.00 0.20 5.47 84.66 0.46 0.67 16 3 Si 0.96 41.44 27.47 68.60 1.88 43.33 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.23 -8.89 6.54 99.48 0.65 -8.24 16 7 C -0.54 -29.97 9.66 25.60 0.25 -29.73 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C -0.02 -0.64 4.16 29.85 0.12 -0.52 16 10 C 0.15 5.64 5.61 86.38 0.48 6.13 16 11 N -0.71 -21.02 5.51 -466.35 -2.57 -23.59 16 12 C 0.57 17.73 7.75 86.67 0.67 18.40 16 13 O -0.58 -21.03 14.01 -4.04 -0.06 -21.08 16 14 C -0.33 -8.60 5.92 -19.80 -0.12 -8.72 16 15 C 0.23 4.92 10.79 85.01 0.92 5.84 16 16 N -0.56 -12.70 9.30 -186.98 -1.74 -14.44 16 17 C 0.40 9.13 7.31 138.74 1.01 10.14 16 18 C -0.13 -2.02 6.23 -11.54 -0.07 -2.09 16 19 C -0.14 -1.71 10.01 30.62 0.31 -1.40 16 20 C -0.14 -1.76 10.24 30.62 0.31 -1.45 16 21 N -0.59 -14.73 10.35 -184.77 -1.91 -16.65 16 22 C 0.48 12.55 7.83 133.74 1.05 13.59 16 23 N -0.81 -18.70 8.55 -54.60 -0.47 -19.17 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 26 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.41 9.42 6.64 -92.71 -0.62 8.80 16 30 H 0.20 2.98 6.57 -2.91 -0.02 2.96 16 31 H 0.14 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.10 1.51 7.53 -2.38 -0.02 1.49 16 33 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.41 7.50 8.95 -92.71 -0.83 6.67 16 37 H 0.42 10.73 6.26 -92.71 -0.58 10.15 16 Total: -1.00 -70.91 316.74 -0.10 -71.01 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.94 Total: 28.18 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.40 Total: 10.87 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -6.39 Total: -132.31 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.88 Total: 43.33 kcal Total: -70.91 -0.10 -71.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287622708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.132 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds