Wall clock time and date at job start Mon Mar 30 2020 20:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.41523 * 2 1 4 4 C 1.33316 * 109.68473 * 180.27121 * 3 2 1 5 5 C 1.36669 * 107.78497 * 359.73283 * 4 3 2 6 6 C 1.46766 * 126.84638 * 180.02562 * 5 4 3 7 7 O 1.21676 * 119.99884 * 170.48724 * 6 5 4 8 8 N 1.34777 * 119.99799 * 350.49294 * 6 5 4 9 9 C 1.46502 * 119.99570 * 179.55314 * 8 6 5 10 10 C 1.50698 * 109.46828 * 90.00147 * 9 8 6 11 11 H 1.08005 * 120.00642 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00114 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99744 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00397 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46766 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47268 * 119.99560 * 14 12 10 17 17 H 1.48503 * 109.46780 * 239.99707 * 14 12 10 18 18 C 1.46498 * 120.00426 * 359.55204 * 8 6 5 19 19 C 1.53007 * 109.46956 * 81.17129 * 18 8 6 20 20 C 1.47201 * 109.46935 * 185.24204 * 19 18 8 21 21 N 5.95085 * 139.76300 * 7.59752 * 2 1 3 22 22 N 1.34489 * 125.41832 * 179.80818 * 2 1 3 23 23 C 1.46500 * 126.47487 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47349 * 270.19386 * 1 2 3 25 25 H 1.08998 * 109.47392 * 30.19624 * 1 2 3 26 26 H 1.09006 * 109.47009 * 150.19446 * 1 2 3 27 27 H 1.08003 * 126.10906 * 179.72373 * 4 3 2 28 28 H 1.08999 * 109.46879 * 209.99455 * 9 8 6 29 29 H 1.08992 * 109.47415 * 329.99892 * 9 8 6 30 30 H 0.97002 * 120.00075 * 180.02562 * 13 12 10 31 31 H 1.08992 * 109.47698 * 201.17325 * 18 8 6 32 32 H 1.08999 * 109.46776 * 321.17701 * 18 8 6 33 33 H 1.08995 * 109.47075 * 305.24461 * 19 18 8 34 34 H 1.09000 * 109.46691 * 65.24542 * 19 18 8 35 35 H 1.08999 * 109.47020 * 264.53638 * 23 22 2 36 36 H 1.08996 * 109.47069 * 144.53675 * 23 22 2 37 37 H 1.08994 * 109.46835 * 24.53199 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7050 -0.0059 5 6 3.5975 -0.6608 -0.0038 6 6 4.8028 -1.4982 -0.0080 7 8 4.7103 -2.6985 0.1687 8 7 6.0121 -0.9377 -0.2074 9 6 7.2162 -1.7722 -0.2018 10 6 7.4933 -2.2634 -1.5993 11 1 6.8379 -1.9825 -2.4105 12 6 8.5831 -3.0725 -1.8423 13 7 9.3809 -3.4151 -0.8545 14 14 8.9271 -3.6808 -3.5747 15 1 7.8890 -3.1571 -4.4983 16 1 10.2642 -3.2038 -4.0105 17 1 8.9012 -5.1655 -3.5921 18 6 6.1227 0.5061 -0.4298 19 6 6.0775 1.2342 0.9152 20 6 6.0618 2.6881 0.6858 21 7 6.0498 3.8102 0.5082 22 7 2.2864 -1.0960 0.0037 23 6 1.8311 -2.4884 0.0089 24 1 -0.3634 0.0035 1.0277 25 1 -0.3634 0.8882 -0.5169 26 1 -0.3633 -0.8918 -0.5108 27 1 4.3977 1.3723 -0.0116 28 1 8.0637 -1.1849 0.1515 29 1 7.0641 -2.6251 0.4596 30 1 10.1477 -3.9839 -1.0255 31 1 7.0657 0.7256 -0.9302 32 1 5.2939 0.8422 -1.0528 33 1 5.1777 0.9420 1.4565 34 1 6.9569 0.9684 1.5019 35 1 1.8116 -2.8605 1.0332 36 1 2.5135 -3.0960 -0.5854 37 1 0.8295 -2.5447 -0.4172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900328362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:28 Heat of formation + Delta-G solvation = 79.481398 kcal Electronic energy + Delta-G solvation = -21434.139184 eV Core-core repulsion = 18214.145733 eV Total energy + Delta-G solvation = -3219.993451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.27155 -39.04281 -37.11016 -35.51596 -33.86244 -33.09939 -31.82575 -31.04653 -28.40636 -27.05907 -26.39629 -24.23242 -23.28171 -21.84968 -20.05024 -18.99664 -17.69830 -16.89200 -16.51297 -16.47995 -16.01395 -15.30848 -15.03749 -14.40757 -14.16610 -13.78240 -13.52987 -13.36337 -13.22837 -12.96919 -12.81173 -12.55539 -12.45206 -12.37804 -12.20109 -11.83632 -11.72869 -11.33209 -11.04604 -10.90581 -10.65726 -10.28378 -10.11990 -9.75569 -9.60614 -9.24664 -8.52060 -8.32611 -7.93532 -6.13537 -4.18319 1.53449 2.58474 2.75748 2.81203 2.93560 3.25416 3.33494 3.36982 3.61488 3.72437 4.15539 4.34754 4.38110 4.71729 4.79668 4.94242 5.05581 5.08287 5.16876 5.22422 5.27151 5.35165 5.45224 5.50601 5.57723 5.69208 5.79947 6.04821 6.20848 6.56901 6.87510 7.11272 7.25666 7.34859 7.57917 7.82396 7.98767 8.09826 8.12850 8.71171 8.88950 9.47359 10.94600 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005983 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.137584 B = 4678.657658 C = 5935.060073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.212 3.788 3 N -0.494 5.494 4 C -0.007 4.007 5 C -0.069 4.069 6 C 0.582 3.418 7 O -0.537 6.537 8 N -0.578 5.578 9 C 0.247 3.753 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.897 3.103 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.099 3.901 19 C -0.066 4.066 20 C 0.211 3.789 21 N -0.432 5.432 22 N -0.424 5.424 23 C 0.071 3.929 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.264 0.736 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 4.675 3.296 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.050 4.050 3 N -0.214 5.214 4 C -0.159 4.159 5 C -0.187 4.187 6 C 0.369 3.631 7 O -0.415 6.415 8 N -0.308 5.308 9 C 0.128 3.872 10 C -0.569 4.569 11 H 0.078 0.922 12 C -0.139 4.139 13 N -0.531 5.531 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.027 4.027 19 C -0.107 4.107 20 C -0.107 4.107 21 N -0.109 5.109 22 N -0.105 5.105 23 C -0.071 4.071 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.214 0.786 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.997 6.184 3.171 15.627 hybrid contribution 0.658 -1.676 -0.854 1.992 sum -13.339 4.508 2.317 14.270 Atomic orbital electron populations 1.20221 0.84748 1.04061 1.03599 1.23362 0.95768 0.81428 1.04438 1.70122 1.02339 1.28136 1.20776 1.23902 0.95529 0.92261 1.04253 1.21180 0.85653 0.95014 1.16833 1.16737 0.81875 0.86398 0.78125 1.90782 1.85980 1.14371 1.50350 1.47902 1.07521 1.06756 1.68627 1.19464 0.79144 0.90335 0.98221 1.21445 1.10592 1.30950 0.93873 0.92225 1.24906 0.95851 0.95756 0.97367 1.69925 1.15699 1.36369 1.31145 0.86451 0.78071 0.78685 0.84280 1.19797 1.20883 1.20889 1.21865 1.05465 0.81524 0.93864 1.20196 1.07090 0.81647 1.01804 1.28925 0.93254 0.94912 0.93649 1.81219 1.08795 1.12715 1.08146 1.45062 1.05315 1.08219 1.51858 1.22201 1.01366 0.78891 1.04632 0.90004 0.89030 0.90739 0.78629 0.94143 0.93283 0.92653 0.87815 0.89323 0.86612 0.85982 0.90010 0.88040 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.17 36.01 0.37 -0.19 16 2 C 0.21 2.82 7.88 -155.62 -1.23 1.59 16 3 N -0.49 -7.68 11.20 -10.58 -0.12 -7.80 16 4 C -0.01 -0.11 8.24 -17.47 -0.14 -0.25 16 5 C -0.07 -1.15 6.63 -82.14 -0.54 -1.70 16 6 C 0.58 11.39 7.54 -12.81 -0.10 11.29 16 7 O -0.54 -12.22 14.76 5.21 0.08 -12.15 16 8 N -0.58 -10.95 2.48 -176.58 -0.44 -11.39 16 9 C 0.25 5.77 5.12 -5.19 -0.03 5.75 16 10 C -0.53 -13.97 9.39 -34.44 -0.32 -14.29 16 11 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 14 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 15 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.10 1.43 4.94 -4.04 -0.02 1.41 16 19 C -0.07 -0.77 4.97 -29.51 -0.15 -0.92 16 20 C 0.21 2.74 14.36 -20.76 -0.30 2.44 16 21 N -0.43 -6.63 18.54 42.16 0.78 -5.85 16 22 N -0.42 -6.10 3.17 -117.28 -0.37 -6.47 16 23 C 0.07 0.81 10.30 59.85 0.62 1.43 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.46 6.95 -51.93 -0.36 0.10 16 27 H 0.20 2.71 2.19 -52.48 -0.12 2.60 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.05 1.30 7.43 -51.93 -0.39 0.91 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.10 1.48 8.01 -51.93 -0.42 1.07 16 32 H 0.09 1.24 5.17 -51.93 -0.27 0.98 16 33 H 0.12 1.33 5.94 -51.93 -0.31 1.02 16 34 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.40 7.02 -51.93 -0.36 1.03 16 37 H 0.08 0.65 6.86 -51.93 -0.36 0.29 16 LS Contribution 315.62 15.07 4.76 4.76 Total: -1.00 -33.50 315.62 -5.77 -39.27 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -4.23 Total: -0.20 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -1.94 Total: 8.18 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.59 Total: -55.80 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.50 -5.77 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900328362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.755 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds