Wall clock time and date at job start Mon Mar 30 2020 20:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30855 * 125.41523 * 2 1 4 4 C 1.33316 * 109.68473 * 180.27121 * 3 2 1 5 5 C 1.36669 * 107.78497 * 359.73283 * 4 3 2 6 6 C 1.46766 * 126.84638 * 180.02562 * 5 4 3 7 7 O 1.21676 * 119.99884 * 170.48724 * 6 5 4 8 8 N 1.34777 * 119.99799 * 350.49294 * 6 5 4 9 9 C 1.46502 * 119.99570 * 179.55314 * 8 6 5 10 10 C 1.50698 * 109.46828 * 90.00147 * 9 8 6 11 11 H 1.08005 * 120.00642 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00114 * 180.02562 * 10 9 8 13 13 N 1.31511 * 119.99744 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00397 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.46766 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47268 * 119.99560 * 14 12 10 17 17 H 1.48503 * 109.46780 * 239.99707 * 14 12 10 18 18 C 1.46498 * 120.00426 * 359.55204 * 8 6 5 19 19 C 1.53007 * 109.46956 * 81.17129 * 18 8 6 20 20 C 1.47201 * 109.46935 * 185.24204 * 19 18 8 21 21 N 5.95085 * 139.76300 * 7.59752 * 2 1 3 22 22 N 1.34489 * 125.41832 * 179.80818 * 2 1 3 23 23 C 1.46500 * 126.47487 * 359.97438 * 22 2 1 24 24 H 1.09003 * 109.47349 * 270.19386 * 1 2 3 25 25 H 1.08998 * 109.47392 * 30.19624 * 1 2 3 26 26 H 1.09006 * 109.47009 * 150.19446 * 1 2 3 27 27 H 1.08003 * 126.10906 * 179.72373 * 4 3 2 28 28 H 1.08999 * 109.46879 * 209.99455 * 9 8 6 29 29 H 1.08992 * 109.47415 * 329.99892 * 9 8 6 30 30 H 0.97002 * 120.00075 * 180.02562 * 13 12 10 31 31 H 1.08992 * 109.47698 * 201.17325 * 18 8 6 32 32 H 1.08999 * 109.46776 * 321.17701 * 18 8 6 33 33 H 1.08995 * 109.47075 * 305.24461 * 19 18 8 34 34 H 1.09000 * 109.46691 * 65.24542 * 19 18 8 35 35 H 1.08999 * 109.47020 * 264.53638 * 23 22 2 36 36 H 1.08996 * 109.47069 * 144.53675 * 23 22 2 37 37 H 1.08994 * 109.46835 * 24.53199 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2653 1.0664 0.0000 4 6 3.5485 0.7050 -0.0059 5 6 3.5975 -0.6608 -0.0038 6 6 4.8028 -1.4982 -0.0080 7 8 4.7103 -2.6985 0.1687 8 7 6.0121 -0.9377 -0.2074 9 6 7.2162 -1.7722 -0.2018 10 6 7.4933 -2.2634 -1.5993 11 1 6.8379 -1.9825 -2.4105 12 6 8.5831 -3.0725 -1.8423 13 7 9.3809 -3.4151 -0.8545 14 14 8.9271 -3.6808 -3.5747 15 1 7.8890 -3.1571 -4.4983 16 1 10.2642 -3.2038 -4.0105 17 1 8.9012 -5.1655 -3.5921 18 6 6.1227 0.5061 -0.4298 19 6 6.0775 1.2342 0.9152 20 6 6.0618 2.6881 0.6858 21 7 6.0498 3.8102 0.5082 22 7 2.2864 -1.0960 0.0037 23 6 1.8311 -2.4884 0.0089 24 1 -0.3634 0.0035 1.0277 25 1 -0.3634 0.8882 -0.5169 26 1 -0.3633 -0.8918 -0.5108 27 1 4.3977 1.3723 -0.0116 28 1 8.0637 -1.1849 0.1515 29 1 7.0641 -2.6251 0.4596 30 1 10.1477 -3.9839 -1.0255 31 1 7.0657 0.7256 -0.9302 32 1 5.2939 0.8422 -1.0528 33 1 5.1777 0.9420 1.4565 34 1 6.9569 0.9684 1.5019 35 1 1.8116 -2.8605 1.0332 36 1 2.5135 -3.0960 -0.5854 37 1 0.8295 -2.5447 -0.4172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900328362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:27 Heat of formation + Delta-G solvation = 58.003683 kcal Electronic energy + Delta-G solvation = -21435.070527 eV Core-core repulsion = 18214.145733 eV Total energy + Delta-G solvation = -3220.924795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.133 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41699 -40.50654 -38.36897 -36.89133 -35.19140 -34.77918 -33.03405 -32.28428 -29.82653 -28.31274 -27.62942 -25.50315 -25.01779 -23.16037 -21.21396 -20.29867 -18.92954 -18.44612 -18.04752 -17.78568 -17.13504 -16.96612 -16.29142 -15.96645 -15.65116 -14.95497 -14.70938 -14.45343 -14.27761 -14.20193 -14.10519 -13.75369 -13.66622 -13.36102 -13.28277 -13.12432 -13.04766 -12.90854 -12.69564 -12.50419 -12.19915 -12.04725 -11.67789 -11.38340 -10.75658 -10.72077 -10.59245 -9.65855 -9.41619 -8.19011 -6.31078 0.30864 1.39972 1.41463 1.45246 1.53822 1.65617 1.73330 1.81170 2.24180 2.36113 2.44861 2.97927 3.13075 3.42974 3.58675 3.85705 3.89570 3.96551 3.97181 4.25012 4.32979 4.39613 4.57310 4.70513 4.73341 4.78011 4.93132 5.01260 5.06964 5.21406 5.29817 5.42130 5.55472 5.82139 6.09593 6.10680 6.49670 6.56760 6.76673 6.86818 7.22319 7.40997 8.88107 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.005983 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.137584 B = 4678.657658 C = 5935.060073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.228 3.772 3 N -0.524 5.524 4 C 0.008 3.992 5 C -0.100 4.100 6 C 0.580 3.420 7 O -0.581 6.581 8 N -0.579 5.579 9 C 0.262 3.738 10 C -0.542 4.542 11 H 0.051 0.949 12 C 0.016 3.984 13 N -0.923 5.923 14 Si 0.958 3.042 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.283 1.283 18 C 0.097 3.903 19 C -0.052 4.052 20 C 0.237 3.763 21 N -0.467 5.467 22 N -0.430 5.430 23 C 0.069 3.931 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.206 0.794 28 H 0.045 0.955 29 H 0.012 0.988 30 H 0.267 0.733 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 5.447 2.852 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.034 4.034 3 N -0.243 5.243 4 C -0.145 4.145 5 C -0.217 4.217 6 C 0.369 3.631 7 O -0.462 6.462 8 N -0.308 5.308 9 C 0.142 3.858 10 C -0.580 4.580 11 H 0.069 0.931 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.784 3.216 15 H -0.196 1.196 16 H -0.197 1.197 17 H -0.209 1.209 18 C -0.027 4.027 19 C -0.093 4.093 20 C -0.081 4.081 21 N -0.145 5.145 22 N -0.110 5.110 23 C -0.072 4.072 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.222 0.778 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.763 6.988 2.724 17.456 hybrid contribution 1.098 -1.905 -0.694 2.305 sum -14.665 5.083 2.030 15.653 Atomic orbital electron populations 1.20520 0.80918 1.05822 1.05437 1.24367 0.97626 0.80410 1.00966 1.70188 1.02388 1.29256 1.22514 1.24035 0.96155 0.91722 1.02615 1.20740 0.85753 0.95012 1.20235 1.17115 0.82753 0.86174 0.77078 1.90746 1.86692 1.16341 1.52434 1.47732 1.06325 1.08188 1.68603 1.18975 0.80913 0.89895 0.96038 1.21716 1.10366 1.31072 0.94871 0.93088 1.25669 0.95805 0.95961 1.00942 1.70017 1.16217 1.37065 1.32947 0.85508 0.78234 0.77913 0.79987 1.19569 1.19745 1.20907 1.22017 1.05975 0.79108 0.95618 1.20074 1.08462 0.80416 1.00363 1.28884 0.92013 0.94677 0.92524 1.81254 1.10193 1.13813 1.09223 1.45298 1.04585 1.09511 1.51632 1.22360 1.02743 0.77191 1.04930 0.87945 0.88165 0.88088 0.77803 0.93706 0.97020 0.92437 0.87507 0.88631 0.85881 0.83986 0.89376 0.90965 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.17 71.24 0.72 -0.13 16 2 C 0.23 5.48 7.88 138.20 1.09 6.57 16 3 N -0.52 -15.23 11.20 -187.39 -2.10 -17.33 16 4 C 0.01 0.24 8.24 84.10 0.69 0.93 16 5 C -0.10 -3.30 6.63 40.01 0.27 -3.04 16 6 C 0.58 23.22 7.54 86.47 0.65 23.87 16 7 O -0.58 -27.60 14.76 -4.27 -0.06 -27.67 16 8 N -0.58 -22.31 2.48 -830.80 -2.06 -24.37 16 9 C 0.26 12.63 5.12 85.63 0.44 13.06 16 10 C -0.54 -29.09 9.39 25.60 0.24 -28.85 16 11 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 12 C 0.02 0.86 5.46 84.66 0.46 1.32 16 13 N -0.92 -52.48 13.29 21.45 0.28 -52.19 16 14 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 C 0.10 2.76 4.94 86.38 0.43 3.19 16 19 C -0.05 -1.15 4.97 28.79 0.14 -1.01 16 20 C 0.24 5.80 14.36 89.44 1.28 7.08 16 21 N -0.47 -13.81 18.54 20.01 0.37 -13.44 16 22 N -0.43 -11.74 3.17 -524.96 -1.67 -13.41 16 23 C 0.07 1.48 10.30 127.77 1.32 2.80 16 24 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 0.75 6.95 -2.38 -0.02 0.73 16 27 H 0.21 5.39 2.19 -2.91 -0.01 5.39 16 28 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.01 0.65 7.43 -2.39 -0.02 0.63 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.53 16 31 H 0.11 2.98 8.01 -2.39 -0.02 2.96 16 32 H 0.10 2.61 5.17 -2.39 -0.01 2.59 16 33 H 0.12 2.65 5.94 -2.39 -0.01 2.64 16 34 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.07 2.02 7.02 -2.39 -0.02 2.00 16 37 H 0.13 1.53 6.86 -2.39 -0.02 1.52 16 Total: -1.00 -74.12 315.62 5.64 -68.48 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.11 Total: 8.95 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: 7.73 Total: 25.80 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -5.17 Total: -120.74 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.12 5.64 -68.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900328362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.483 kcal (2) G-P(sol) polarization free energy of solvation -74.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds