Wall clock time and date at job start Mon Mar 30 2020 20:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39900 * 109.46764 * 2 1 4 4 F 1.39895 * 109.46931 * 119.99742 * 2 1 3 5 5 C 1.50697 * 109.47239 * 240.00143 * 2 1 3 6 6 O 1.21287 * 120.00244 * 24.99310 * 5 2 1 7 7 N 1.34780 * 119.99941 * 205.00155 * 5 2 1 8 8 C 1.46500 * 119.99944 * 180.02562 * 7 5 2 9 9 H 1.08993 * 110.89120 * 37.42131 * 8 7 5 10 10 C 1.54919 * 110.99965 * 273.54229 * 8 7 5 11 11 N 1.47423 * 104.82933 * 278.93389 * 10 8 7 12 12 C 1.36943 * 125.64342 * 155.91120 * 11 10 8 13 13 H 1.07996 * 119.99480 * 179.97438 * 12 11 10 14 14 C 1.38804 * 120.00210 * 359.97438 * 12 11 10 15 15 N 1.31625 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00232 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46879 * 90.00068 * 16 14 12 18 18 H 1.48499 * 109.47401 * 209.99872 * 16 14 12 19 19 H 1.48497 * 109.46854 * 330.00503 * 16 14 12 20 20 C 1.47018 * 108.70762 * 335.87624 * 11 10 8 21 21 C 1.54328 * 107.26986 * 1.05644 * 20 11 10 22 22 C 1.53006 * 110.71943 * 263.82935 * 21 20 11 23 23 C 1.53000 * 110.71948 * 140.56018 * 21 20 11 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00364 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00193 * 1 2 3 27 27 H 0.96993 * 119.99758 * 359.97438 * 7 5 2 28 28 H 1.08996 * 110.36586 * 37.77868 * 10 8 7 29 29 H 1.09002 * 110.36332 * 159.99165 * 10 8 7 30 30 H 0.96997 * 119.99761 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.88438 * 120.47708 * 20 11 10 32 32 H 1.09004 * 109.88554 * 241.64268 * 20 11 10 33 33 H 1.09000 * 109.46544 * 173.52196 * 22 21 20 34 34 H 1.08996 * 109.47264 * 293.51918 * 22 21 20 35 35 H 1.08996 * 109.46924 * 53.52891 * 22 21 20 36 36 H 1.09004 * 109.46844 * 306.47539 * 23 21 20 37 37 H 1.09000 * 109.47529 * 66.47440 * 23 21 20 38 38 H 1.08997 * 109.47010 * 186.48118 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 8 1.3370 -0.7706 -2.2224 7 7 3.2544 -1.2789 -1.2286 8 6 3.7430 -1.9690 -2.4250 9 1 3.4283 -1.4488 -3.3295 10 6 3.2765 -3.4462 -2.4433 11 7 4.2241 -4.1521 -1.5617 12 6 3.9771 -5.3264 -0.9020 13 1 4.7406 -5.7655 -0.2771 14 6 2.7455 -5.9523 -1.0365 15 7 1.8148 -5.4168 -1.7978 16 14 2.4084 -7.5539 -0.1361 17 1 1.8332 -7.2585 1.2008 18 1 1.4459 -8.3693 -0.9197 19 1 3.6778 -8.3069 0.0266 20 6 5.4784 -3.3869 -1.5087 21 6 5.2856 -2.1300 -2.3831 22 6 5.8445 -2.3578 -3.7891 23 6 5.9396 -0.9107 -1.7301 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.8106 -1.2306 -0.4355 28 1 2.2620 -3.5285 -2.0533 29 1 3.3268 -3.8473 -3.4555 30 1 0.9543 -5.8544 -1.8921 31 1 5.6909 -3.0942 -0.4805 32 1 6.2973 -3.9897 -1.9015 33 1 5.5965 -1.5051 -4.4212 34 1 6.9276 -2.4679 -3.7362 35 1 5.4074 -3.2625 -4.2117 36 1 5.5691 -0.8021 -0.7107 37 1 7.0211 -1.0449 -1.7112 38 1 5.6943 -0.0164 -2.3029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972735321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:57 Heat of formation + Delta-G solvation = -111.221431 kcal Electronic energy + Delta-G solvation = -23261.384211 eV Core-core repulsion = 19582.432079 eV Total energy + Delta-G solvation = -3678.952133 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.07565 -47.06957 -39.79235 -38.03282 -33.94448 -33.18454 -31.42295 -30.73409 -28.34159 -27.00517 -25.66037 -24.76413 -23.06737 -20.78579 -19.97444 -19.06521 -17.97452 -17.61152 -16.78143 -16.57060 -15.62628 -15.13047 -14.66031 -14.25416 -13.94928 -13.84744 -13.75957 -13.38985 -13.22732 -13.20350 -12.85671 -12.51723 -12.34987 -12.22027 -11.97105 -11.84990 -11.80172 -11.35062 -11.20803 -11.05766 -10.79097 -10.47774 -10.26403 -10.03895 -9.86993 -9.73059 -9.61056 -8.73167 -8.54534 -6.84664 -5.65754 -3.08656 2.51256 2.94866 3.39151 3.44108 3.46222 3.86844 4.15574 4.47074 4.66101 4.68619 4.90028 5.18339 5.23540 5.44705 5.49734 5.57309 5.63439 5.72175 5.84121 5.92654 5.97054 6.04357 6.11628 6.20945 6.32052 6.45249 6.53814 6.56665 6.66618 6.87993 7.37974 7.58266 7.66265 7.85602 8.25620 8.34634 9.19441 9.80904 10.44368 11.37362 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.007783 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.924934 B = 3596.660765 C = 4756.263682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.279 3.721 3 F -0.189 7.189 4 F -0.188 7.188 5 C 0.486 3.514 6 O -0.508 6.508 7 N -0.681 5.681 8 C 0.119 3.881 9 H 0.089 0.911 10 C 0.147 3.853 11 N -0.601 5.601 12 C -0.224 4.224 13 H 0.077 0.923 14 C -0.009 4.009 15 N -0.919 5.919 16 Si 0.913 3.087 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.142 3.858 21 C -0.087 4.087 22 C -0.128 4.128 23 C -0.133 4.133 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.403 0.597 28 H 0.114 0.886 29 H 0.024 0.976 30 H 0.252 0.748 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 11.739 1.498 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.239 3.761 3 F -0.170 7.170 4 F -0.169 7.169 5 C 0.266 3.734 6 O -0.383 6.383 7 N -0.330 5.330 8 C 0.015 3.985 9 H 0.107 0.893 10 C 0.021 3.979 11 N -0.327 5.327 12 C -0.353 4.353 13 H 0.095 0.905 14 C -0.205 4.205 15 N -0.567 5.567 16 Si 0.744 3.256 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.208 1.208 20 C 0.016 3.984 21 C -0.088 4.088 22 C -0.186 4.186 23 C -0.191 4.191 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.239 0.761 28 H 0.132 0.868 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.355 11.519 0.818 11.786 hybrid contribution 0.245 -0.828 1.031 1.345 sum 2.601 10.690 1.849 11.157 Atomic orbital electron populations 1.22602 0.89119 1.06605 1.05495 1.21456 0.95864 0.75833 0.82908 1.93046 1.90636 1.36664 1.96688 1.93071 1.90436 1.80640 1.52732 1.20485 0.83056 0.80977 0.88872 1.90759 1.55373 1.59141 1.33047 1.45837 1.16181 1.53455 1.17562 1.22697 0.92803 0.96752 0.86289 0.89287 1.22308 0.97995 0.83788 0.93797 1.44453 1.09563 1.24341 1.54331 1.19039 0.98153 0.96750 1.21319 0.90484 1.24791 0.96443 0.99262 1.00013 1.69789 1.05458 1.39408 1.42025 0.86095 0.77679 0.82896 0.78944 1.21623 1.21669 1.20766 1.21434 0.90694 0.90531 0.95761 1.21853 0.94068 0.96000 0.96849 1.21685 1.00298 1.01970 0.94600 1.21747 1.00317 0.97019 1.00032 0.88488 0.89605 0.88264 0.76132 0.86846 0.95814 0.93669 0.95927 0.95628 0.92994 0.92532 0.91652 0.92954 0.92413 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 8.92 37.16 0.33 -1.97 16 2 C 0.28 4.26 2.47 -27.88 -0.07 4.19 16 3 F -0.19 -2.75 17.05 2.25 0.04 -2.72 16 4 F -0.19 -3.01 16.51 2.25 0.04 -2.97 16 5 C 0.49 8.84 7.23 -10.99 -0.08 8.76 16 6 O -0.51 -10.48 15.84 5.55 0.09 -10.39 16 7 N -0.68 -12.21 4.62 -51.73 -0.24 -12.45 16 8 C 0.12 2.27 2.56 -65.78 -0.17 2.10 16 9 H 0.09 1.68 7.63 -51.93 -0.40 1.29 16 10 C 0.15 3.54 5.27 -2.53 -0.01 3.52 16 11 N -0.60 -14.86 3.39 -170.07 -0.58 -15.44 16 12 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 13 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 14 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 15 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 16 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.14 2.81 6.41 -3.06 -0.02 2.79 16 21 C -0.09 -1.42 0.81 -152.67 -0.12 -1.54 16 22 C -0.13 -1.88 8.41 37.16 0.31 -1.57 16 23 C -0.13 -1.76 8.07 37.16 0.30 -1.46 16 24 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.10 1.21 7.87 -51.93 -0.41 0.80 16 27 H 0.40 6.73 6.44 -40.82 -0.26 6.46 16 28 H 0.11 3.18 5.87 -51.93 -0.31 2.88 16 29 H 0.02 0.62 7.81 -51.93 -0.41 0.21 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.02 0.44 7.76 -51.93 -0.40 0.04 16 32 H 0.03 0.51 7.84 -51.93 -0.41 0.10 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.09 7.58 -51.93 -0.39 0.69 16 36 H 0.05 0.68 6.35 -51.93 -0.33 0.35 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -30.51 314.42 -5.55 -36.06 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.39 Total: 4.21 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 0.22 Total: 8.17 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.26 Total: -54.16 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.08 Total: -5.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.51 -5.55 -36.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972735321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.159 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds