Wall clock time and date at job start Mon Mar 30 2020 20:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 F 1.39900 * 109.46764 * 2 1 4 4 F 1.39895 * 109.46931 * 119.99742 * 2 1 3 5 5 C 1.50697 * 109.47239 * 240.00143 * 2 1 3 6 6 O 1.21287 * 120.00244 * 24.99310 * 5 2 1 7 7 N 1.34780 * 119.99941 * 205.00155 * 5 2 1 8 8 C 1.46500 * 119.99944 * 180.02562 * 7 5 2 9 9 H 1.08993 * 110.89120 * 37.42131 * 8 7 5 10 10 C 1.54919 * 110.99965 * 273.54229 * 8 7 5 11 11 N 1.47423 * 104.82933 * 278.93389 * 10 8 7 12 12 C 1.36943 * 125.64342 * 155.91120 * 11 10 8 13 13 H 1.07996 * 119.99480 * 179.97438 * 12 11 10 14 14 C 1.38804 * 120.00210 * 359.97438 * 12 11 10 15 15 N 1.31625 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00232 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46879 * 90.00068 * 16 14 12 18 18 H 1.48499 * 109.47401 * 209.99872 * 16 14 12 19 19 H 1.48497 * 109.46854 * 330.00503 * 16 14 12 20 20 C 1.47018 * 108.70762 * 335.87624 * 11 10 8 21 21 C 1.54328 * 107.26986 * 1.05644 * 20 11 10 22 22 C 1.53006 * 110.71943 * 263.82935 * 21 20 11 23 23 C 1.53000 * 110.71948 * 140.56018 * 21 20 11 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 300.00364 * 1 2 3 26 26 H 1.09000 * 109.47050 * 60.00193 * 1 2 3 27 27 H 0.96993 * 119.99758 * 359.97438 * 7 5 2 28 28 H 1.08996 * 110.36586 * 37.77868 * 10 8 7 29 29 H 1.09002 * 110.36332 * 159.99165 * 10 8 7 30 30 H 0.96997 * 119.99761 * 179.97438 * 15 14 12 31 31 H 1.09000 * 109.88438 * 120.47708 * 20 11 10 32 32 H 1.09004 * 109.88554 * 241.64268 * 20 11 10 33 33 H 1.09000 * 109.46544 * 173.52196 * 22 21 20 34 34 H 1.08996 * 109.47264 * 293.51918 * 22 21 20 35 35 H 1.08996 * 109.46924 * 53.52891 * 22 21 20 36 36 H 1.09004 * 109.46844 * 306.47539 * 23 21 20 37 37 H 1.09000 * 109.47529 * 66.47440 * 23 21 20 38 38 H 1.08997 * 109.47010 * 186.48118 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 8 1.3370 -0.7706 -2.2224 7 7 3.2544 -1.2789 -1.2286 8 6 3.7430 -1.9690 -2.4250 9 1 3.4283 -1.4488 -3.3295 10 6 3.2765 -3.4462 -2.4433 11 7 4.2241 -4.1521 -1.5617 12 6 3.9771 -5.3264 -0.9020 13 1 4.7406 -5.7655 -0.2771 14 6 2.7455 -5.9523 -1.0365 15 7 1.8148 -5.4168 -1.7978 16 14 2.4084 -7.5539 -0.1361 17 1 1.8332 -7.2585 1.2008 18 1 1.4459 -8.3693 -0.9197 19 1 3.6778 -8.3069 0.0266 20 6 5.4784 -3.3869 -1.5087 21 6 5.2856 -2.1300 -2.3831 22 6 5.8445 -2.3578 -3.7891 23 6 5.9396 -0.9107 -1.7301 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 3.8106 -1.2306 -0.4355 28 1 2.2620 -3.5285 -2.0533 29 1 3.3268 -3.8473 -3.4555 30 1 0.9543 -5.8544 -1.8921 31 1 5.6909 -3.0942 -0.4805 32 1 6.2973 -3.9897 -1.9015 33 1 5.5965 -1.5051 -4.4212 34 1 6.9276 -2.4679 -3.7362 35 1 5.4074 -3.2625 -4.2117 36 1 5.5691 -0.8021 -0.7107 37 1 7.0211 -1.0449 -1.7112 38 1 5.6943 -0.0164 -2.3029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972735321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:56 Heat of formation + Delta-G solvation = -130.913018 kcal Electronic energy + Delta-G solvation = -23262.238102 eV Core-core repulsion = 19582.432079 eV Total energy + Delta-G solvation = -3679.806024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.31251 -48.30176 -41.31092 -39.57446 -35.76606 -34.69912 -32.63401 -32.57582 -30.00104 -28.18075 -27.46944 -26.17724 -24.65022 -22.42237 -21.58302 -20.48689 -19.34517 -18.88496 -18.71348 -17.94455 -17.09453 -16.75557 -16.31548 -15.83518 -15.56254 -15.34003 -15.10598 -14.68459 -14.61832 -14.52929 -14.22515 -13.78177 -13.71756 -13.56318 -13.37906 -13.09079 -13.06339 -13.02107 -12.88176 -12.65074 -12.58816 -12.13992 -11.83858 -11.80074 -11.51371 -11.41175 -11.08320 -10.76720 -10.18071 -8.86660 -7.76875 -5.21684 1.06013 1.44869 1.46212 1.54912 1.58184 2.48256 2.61784 2.90904 3.32573 3.40506 3.47016 3.51242 3.66081 3.92426 4.02561 4.35980 4.45850 4.48956 4.56531 4.65039 4.79831 4.84283 4.89917 4.92176 4.98424 5.06647 5.16509 5.21303 5.30819 5.45266 5.50333 5.56277 5.78991 6.20355 6.29522 6.81719 7.08867 7.77734 8.40905 9.23882 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.014773 B = 0.007783 C = 0.005886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.924934 B = 3596.660765 C = 4756.263682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.287 3.713 3 F -0.181 7.181 4 F -0.192 7.192 5 C 0.478 3.522 6 O -0.537 6.537 7 N -0.678 5.678 8 C 0.130 3.870 9 H 0.091 0.909 10 C 0.154 3.846 11 N -0.618 5.618 12 C -0.234 4.234 13 H 0.083 0.917 14 C -0.067 4.067 15 N -0.947 5.947 16 Si 0.977 3.023 17 H -0.287 1.287 18 H -0.297 1.297 19 H -0.269 1.269 20 C 0.136 3.864 21 C -0.073 4.073 22 C -0.125 4.125 23 C -0.127 4.127 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.410 0.590 28 H 0.072 0.928 29 H -0.007 1.007 30 H 0.244 0.756 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.435 13.128 2.482 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.248 3.752 3 F -0.162 7.162 4 F -0.173 7.173 5 C 0.259 3.741 6 O -0.414 6.414 7 N -0.328 5.328 8 C 0.025 3.975 9 H 0.108 0.892 10 C 0.028 3.972 11 N -0.344 5.344 12 C -0.363 4.363 13 H 0.101 0.899 14 C -0.260 4.260 15 N -0.597 5.597 16 Si 0.805 3.195 17 H -0.214 1.214 18 H -0.224 1.224 19 H -0.194 1.194 20 C 0.011 3.989 21 C -0.074 4.074 22 C -0.183 4.183 23 C -0.185 4.185 24 H 0.104 0.896 25 H 0.136 0.864 26 H 0.123 0.877 27 H 0.247 0.753 28 H 0.090 0.910 29 H 0.011 0.989 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.862 12.930 1.828 13.618 hybrid contribution -0.165 -1.266 0.709 1.460 sum 3.696 11.664 2.537 12.496 Atomic orbital electron populations 1.22661 0.87040 1.06479 1.07393 1.21347 0.97028 0.75603 0.81236 1.93065 1.90705 1.35878 1.96557 1.93068 1.90656 1.80860 1.52683 1.21113 0.82656 0.80704 0.89611 1.90742 1.56006 1.60214 1.34488 1.45823 1.16441 1.52996 1.17518 1.22419 0.94872 0.93283 0.86975 0.89157 1.21957 0.96244 0.87278 0.91725 1.44680 1.11587 1.24242 1.53927 1.19430 0.98186 0.97719 1.20979 0.89920 1.25603 0.96536 1.02537 1.01278 1.70080 1.05457 1.40533 1.43655 0.85100 0.77609 0.79271 0.77493 1.21369 1.22389 1.19373 1.21668 0.88606 0.91535 0.97056 1.21849 0.92066 0.95884 0.97623 1.21687 1.01522 1.01498 0.93573 1.21723 1.01421 0.95493 0.99844 0.89606 0.86398 0.87740 0.75277 0.91020 0.98918 0.94628 0.95005 0.95325 0.90941 0.90068 0.94514 0.92837 0.90045 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 8.92 71.98 0.64 -3.66 16 2 C 0.29 8.39 2.47 29.85 0.07 8.46 16 3 F -0.18 -4.87 17.05 44.97 0.77 -4.11 16 4 F -0.19 -5.88 16.51 44.97 0.74 -5.14 16 5 C 0.48 17.23 7.23 87.66 0.63 17.86 16 6 O -0.54 -22.45 15.84 -3.05 -0.05 -22.50 16 7 N -0.68 -23.91 4.62 -435.96 -2.02 -25.92 16 8 C 0.13 4.92 2.56 46.38 0.12 5.04 16 9 H 0.09 3.41 7.63 -2.39 -0.02 3.39 16 10 C 0.15 7.71 5.27 86.86 0.46 8.17 16 11 N -0.62 -31.03 3.39 -691.98 -2.35 -33.38 16 12 C -0.23 -12.98 10.27 84.03 0.86 -12.12 16 13 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 14 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 15 N -0.95 -57.59 10.09 21.65 0.22 -57.37 16 16 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 17 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 C 0.14 5.24 6.41 86.73 0.56 5.80 16 21 C -0.07 -2.26 0.81 -50.99 -0.04 -2.30 16 22 C -0.13 -3.42 8.41 71.98 0.61 -2.82 16 23 C -0.13 -2.89 8.07 71.98 0.58 -2.31 16 24 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.10 2.42 7.87 -2.39 -0.02 2.40 16 27 H 0.41 13.14 6.44 -92.71 -0.60 12.54 16 28 H 0.07 4.23 5.87 -2.39 -0.01 4.22 16 29 H -0.01 -0.38 7.81 -2.39 -0.02 -0.40 16 30 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 31 H 0.03 1.18 7.76 -2.39 -0.02 1.16 16 32 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.20 7.58 -2.39 -0.02 1.19 16 36 H 0.05 1.21 6.35 -2.38 -0.02 1.20 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -68.05 314.42 4.77 -63.28 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.47 Total: 18.21 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 4.96 Total: 18.77 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.15 Total: -116.67 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.05 Total: -22.50 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 1.51 Total: -9.24 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -68.05 4.77 -63.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972735321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.637 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds