Wall clock time and date at job start Mon Mar 30 2020 20:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52990 * 109.47302 * 338.06499 * 3 2 1 5 5 N 1.46900 * 109.47234 * 181.11289 * 4 3 2 6 6 C 1.46896 * 110.99837 * 60.89464 * 5 4 3 7 7 C 1.50700 * 109.47462 * 66.04638 * 6 5 4 8 8 H 1.07997 * 120.00213 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99993 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00205 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47177 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47358 * 119.99685 * 11 9 7 14 14 H 1.48500 * 109.46984 * 239.99928 * 11 9 7 15 15 C 1.46897 * 110.99938 * 296.93927 * 5 4 3 16 16 C 1.50705 * 109.47406 * 288.41018 * 15 5 4 17 17 N 1.31072 * 126.65662 * 91.45738 * 16 15 5 18 18 N 1.28841 * 107.98940 * 179.97438 * 17 16 15 19 19 N 1.28744 * 109.39630 * 0.02562 * 18 17 16 20 20 N 1.29016 * 108.80977 * 359.74273 * 19 18 17 21 21 C 1.46501 * 126.44167 * 180.24760 * 20 19 18 22 22 C 1.53001 * 117.49505 * 8.80065 * 21 20 19 23 23 C 1.52994 * 117.49630 * 300.17965 * 21 20 19 24 24 H 1.09007 * 109.46425 * 218.06834 * 3 2 1 25 25 H 1.08993 * 109.46937 * 98.06655 * 3 2 1 26 26 H 1.09006 * 109.47628 * 61.11270 * 4 3 2 27 27 H 1.09005 * 109.47773 * 301.11332 * 4 3 2 28 28 H 1.09001 * 109.47080 * 186.04723 * 6 5 4 29 29 H 1.09002 * 109.47175 * 306.04503 * 6 5 4 30 30 H 0.97000 * 120.00140 * 180.02562 * 10 9 7 31 31 H 1.08996 * 109.47234 * 48.41225 * 15 5 4 32 32 H 1.08997 * 109.47103 * 168.41185 * 15 5 4 33 33 H 1.08998 * 115.55153 * 154.51083 * 21 20 19 34 34 H 1.08997 * 117.49847 * 0.02562 * 22 21 20 35 35 H 1.09002 * 117.49489 * 145.02194 * 22 21 20 36 36 H 1.09001 * 117.49811 * 214.97765 * 23 21 20 37 37 H 1.09000 * 117.50298 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3371 0.5388 5 7 4.5874 -1.3264 0.5638 6 6 5.0912 -0.2619 1.4417 7 6 4.7106 -0.5648 2.8681 8 1 4.1508 -1.4590 3.0994 9 6 5.0771 0.2995 3.8778 10 7 5.7584 1.3886 3.5962 11 14 4.6059 -0.0763 5.6459 12 1 3.8469 -1.3518 5.6955 13 1 5.8350 -0.1988 6.4704 14 1 3.7608 1.0231 6.1773 15 6 5.1360 -1.1941 -0.7924 16 6 4.9193 -2.4789 -1.5497 17 7 3.8906 -2.7782 -2.3049 18 7 4.0746 -3.9629 -2.7767 19 7 5.1938 -4.4273 -2.3416 20 7 5.7468 -3.5398 -1.5859 21 6 7.0325 -3.6645 -0.8946 22 6 7.9034 -4.8753 -1.2358 23 6 7.1848 -4.8055 0.1132 24 1 2.9709 0.8100 0.6337 25 1 2.9713 0.1450 -1.0174 26 1 2.7721 -2.1447 -0.1060 27 1 2.7392 -1.4907 1.5491 28 1 6.1767 -0.2063 1.3593 29 1 4.6550 0.6916 1.1439 30 1 6.0165 1.9965 4.3066 31 1 4.6322 -0.3778 -1.3101 32 1 6.2037 -0.9828 -0.7335 33 1 7.5398 -2.7257 -0.6725 34 1 7.5200 -5.5788 -1.9748 35 1 8.9841 -4.7332 -1.2383 36 1 7.7928 -4.6175 0.9981 37 1 6.3284 -5.4631 0.2623 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104066607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:38 Heat of formation + Delta-G solvation = 180.730097 kcal Electronic energy + Delta-G solvation = -21270.811292 eV Core-core repulsion = 18087.501065 eV Total energy + Delta-G solvation = -3183.310227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.98027 -38.10928 -37.88597 -35.97753 -33.53570 -33.14118 -32.38324 -30.41430 -28.06055 -25.83717 -25.13002 -23.82428 -22.87092 -22.36410 -21.24084 -19.99868 -17.76525 -17.53463 -16.87719 -16.44559 -15.38627 -15.32052 -15.07086 -14.51581 -14.44011 -13.90785 -13.67175 -13.35690 -13.01952 -12.47663 -12.26442 -12.15636 -12.05979 -11.90221 -11.83921 -11.64493 -11.43738 -11.29394 -11.09281 -10.88845 -10.79657 -10.79234 -10.32036 -10.25526 -10.12514 -9.75634 -9.45239 -8.63412 -7.71766 -6.22889 -4.24810 1.35620 2.01139 2.40756 3.12295 3.16696 3.20424 3.29917 3.33588 3.37030 4.01692 4.19760 4.28108 4.32993 4.43247 4.53305 4.62151 4.81629 5.14564 5.21785 5.32960 5.35821 5.47552 5.50198 5.60056 5.68291 5.71377 5.80094 5.85997 5.91976 6.14557 6.36488 6.51065 6.86996 6.99736 7.49142 7.65981 7.85839 7.94321 8.19705 8.79612 8.82481 9.41302 10.87378 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.006328 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.635684 B = 4423.603357 C = 5983.451702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.226 3.774 3 C -0.071 4.071 4 C 0.069 3.931 5 N -0.522 5.522 6 C 0.188 3.812 7 C -0.512 4.512 8 H 0.065 0.935 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.120 3.880 16 C 0.213 3.787 17 N -0.307 5.307 18 N -0.083 5.083 19 N -0.107 5.107 20 N -0.270 5.270 21 C 0.059 3.941 22 C -0.163 4.163 23 C -0.154 4.154 24 H 0.123 0.877 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.036 0.964 29 H 0.008 0.992 30 H 0.263 0.737 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.364 -6.438 -7.598 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.061 4.061 5 N -0.246 5.246 6 C 0.064 3.936 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.011 4.011 16 C -0.065 4.065 17 N -0.158 5.158 18 N -0.077 5.077 19 N -0.093 5.093 20 N -0.071 5.071 21 C -0.044 4.044 22 C -0.201 4.201 23 C -0.192 4.192 24 H 0.141 0.859 25 H 0.120 0.880 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.178 0.822 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.160 -7.576 -8.192 12.294 hybrid contribution 0.602 1.189 1.319 1.875 sum 5.762 -6.387 -6.873 11.010 Atomic orbital electron populations 1.81136 1.13165 1.09527 1.09783 1.29118 0.95159 0.92529 0.92358 1.20146 0.81989 1.04435 1.04654 1.22090 0.88115 0.93168 1.02741 1.62409 1.06081 1.50905 1.05211 1.19932 0.95939 0.86686 0.91013 1.21094 1.35619 1.07747 0.90572 0.91644 1.24919 0.95037 0.94919 0.99244 1.69927 1.38367 1.12030 1.33049 0.86490 0.78298 0.78473 0.84514 1.19633 1.20960 1.21011 1.20669 1.02377 0.87349 0.90737 1.26164 0.87490 0.94162 0.98673 1.75019 1.20328 1.08395 1.12020 1.78560 1.07667 1.03327 1.18123 1.78742 1.06192 1.16357 1.08005 1.47733 1.17205 1.10709 1.31415 1.22291 0.81966 0.98220 1.01957 1.23450 0.98966 0.97809 0.99837 1.23452 1.03328 0.98404 0.94031 0.85875 0.88041 0.91415 0.88624 0.94589 0.97465 0.92746 0.90464 0.88311 0.82155 0.86948 0.86629 0.86123 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.61 18.54 42.15 0.78 -7.83 16 2 C 0.23 3.75 15.43 -20.76 -0.32 3.43 16 3 C -0.07 -1.03 5.07 -29.52 -0.15 -1.18 16 4 C 0.07 1.12 4.97 -3.83 -0.02 1.11 16 5 N -0.52 -8.61 4.65 -237.52 -1.10 -9.72 16 6 C 0.19 3.77 4.49 -4.98 -0.02 3.75 16 7 C -0.51 -12.10 8.50 -34.44 -0.29 -12.39 16 8 H 0.07 1.58 7.11 -52.49 -0.37 1.21 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 10 N -0.89 -23.30 13.29 55.43 0.74 -22.57 16 11 Si 0.89 19.78 29.54 -169.99 -5.02 14.75 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.12 1.61 5.17 -4.98 -0.03 1.59 16 16 C 0.21 3.13 6.92 -155.43 -1.08 2.05 16 17 N -0.31 -5.16 11.77 32.70 0.38 -4.78 16 18 N -0.08 -1.45 13.43 60.35 0.81 -0.64 16 19 N -0.11 -1.67 12.69 60.35 0.77 -0.90 16 20 N -0.27 -3.70 3.67 -51.81 -0.19 -3.89 16 21 C 0.06 0.60 6.64 -67.93 -0.45 0.14 16 22 C -0.16 -1.27 10.15 -26.73 -0.27 -1.54 16 23 C -0.15 -1.41 10.46 -26.73 -0.28 -1.69 16 24 H 0.12 1.89 6.24 -51.93 -0.32 1.57 16 25 H 0.10 1.26 6.30 -51.93 -0.33 0.93 16 26 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 27 H 0.10 1.73 6.83 -51.93 -0.35 1.38 16 28 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 29 H 0.01 0.16 6.00 -51.93 -0.31 -0.15 16 30 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.08 0.94 5.92 -51.93 -0.31 0.63 16 32 H 0.10 1.14 7.06 -51.93 -0.37 0.77 16 33 H 0.16 1.32 7.44 -51.93 -0.39 0.93 16 34 H 0.11 0.98 7.85 -51.93 -0.41 0.58 16 35 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -29.48 320.44 -5.34 -34.83 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -4.33 Total: -0.78 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -3.00 Total: -3.30 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 2.18 Total: -50.33 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.48 -5.34 -34.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104066607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.557 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds