Wall clock time and date at job start Mon Mar 30 2020 20:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47526 * 2 1 4 4 C 1.52993 * 109.47302 * 239.99922 * 2 1 3 5 5 N 1.46501 * 109.47264 * 185.00295 * 4 2 1 6 6 C 1.46504 * 120.00354 * 89.99605 * 5 4 2 7 7 C 1.36942 * 119.99754 * 269.99777 * 5 4 2 8 8 H 1.08004 * 119.99872 * 142.10424 * 7 5 4 9 9 C 1.38804 * 120.00025 * 322.10538 * 7 5 4 10 10 N 1.31621 * 120.00439 * 155.45884 * 9 7 5 11 11 Si 1.86807 * 120.00162 * 335.45618 * 9 7 5 12 12 H 1.48504 * 109.46816 * 95.38838 * 11 9 7 13 13 H 1.48494 * 109.47190 * 215.38814 * 11 9 7 14 14 H 1.48501 * 109.47097 * 335.38808 * 11 9 7 15 15 N 1.46506 * 109.47108 * 119.99280 * 2 1 3 16 16 C 1.34771 * 120.00273 * 275.00296 * 15 2 1 17 17 O 1.21274 * 120.00373 * 0.02562 * 16 15 2 18 18 C 1.50698 * 119.99842 * 179.97438 * 16 15 2 19 19 C 1.53004 * 115.56211 * 34.31174 * 18 16 15 20 20 F 1.39891 * 109.47433 * 85.68886 * 19 18 16 21 21 F 1.39904 * 109.46964 * 205.69011 * 19 18 16 22 22 C 1.52998 * 117.50291 * 180.02562 * 18 16 15 23 23 C 1.53000 * 60.03321 * 107.47601 * 22 18 16 24 24 H 1.08996 * 109.47143 * 59.99852 * 1 2 3 25 25 H 1.08991 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47337 * 300.00505 * 1 2 3 27 27 H 1.08998 * 109.47066 * 304.99882 * 4 2 1 28 28 H 1.08999 * 109.47660 * 65.00256 * 4 2 1 29 29 H 1.08999 * 109.46839 * 95.27399 * 6 5 4 30 30 H 1.08994 * 109.47129 * 215.27534 * 6 5 4 31 31 H 1.08998 * 109.47084 * 335.27508 * 6 5 4 32 32 H 0.96994 * 120.00477 * 179.97438 * 10 9 7 33 33 H 0.97003 * 119.99452 * 95.00264 * 15 2 1 34 34 H 1.09003 * 109.47112 * 325.68504 * 19 18 16 35 35 H 1.08994 * 117.50419 * 214.98018 * 22 18 16 36 36 H 1.09005 * 117.49706 * 359.97438 * 22 18 16 37 37 H 1.09003 * 117.49250 * 107.50619 * 23 22 18 38 38 H 1.08993 * 117.49943 * 252.52151 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1904 6 6 4.1258 -1.9920 -0.5610 7 6 4.2799 0.1648 -1.7239 8 1 5.1934 0.4588 -1.2285 9 6 3.8962 0.7918 -2.9014 10 7 4.3221 2.0082 -3.1684 11 14 2.7755 -0.0910 -4.1074 12 1 1.3676 0.3116 -3.8603 13 1 3.1579 0.2724 -5.4955 14 1 2.9100 -1.5586 -3.9249 15 7 2.0183 -0.6905 1.1963 16 6 2.1470 -0.0181 2.3572 17 8 1.8581 1.1585 2.4118 18 6 2.6488 -0.7286 3.5878 19 6 3.6929 -1.8193 3.3408 20 9 4.9666 -1.2429 3.2911 21 9 3.6447 -2.7549 4.3798 22 6 2.7722 0.0894 4.8749 23 6 1.6557 -0.9469 4.7320 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -1.7198 -1.2950 28 1 1.7517 -0.1584 -2.1370 29 1 4.3677 -2.7312 -1.3247 30 1 5.0389 -1.6835 -0.0519 31 1 3.4365 -2.4284 0.1618 32 1 4.0543 2.4462 -3.9913 33 1 2.2490 -1.6317 1.1528 34 1 3.4819 -2.3166 2.3940 35 1 3.5975 -0.1492 5.5457 36 1 2.4908 1.1416 4.8315 37 1 1.7465 -1.8673 5.3090 38 1 0.6399 -0.5765 4.5943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754310874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:11 Heat of formation + Delta-G solvation = -83.855730 kcal Electronic energy + Delta-G solvation = -23003.021041 eV Core-core repulsion = 19325.255574 eV Total energy + Delta-G solvation = -3677.765467 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.09236 -47.05397 -39.98842 -37.29330 -36.06833 -34.14588 -31.59995 -31.03535 -27.50876 -26.76728 -25.75649 -23.67642 -22.72866 -21.44618 -20.66242 -19.70845 -18.39195 -17.29827 -17.21773 -16.86896 -15.80267 -15.61493 -15.06697 -14.79518 -14.38059 -14.13999 -13.87899 -13.74301 -13.42552 -13.23542 -13.02738 -12.75454 -12.67961 -12.23812 -11.98969 -11.84086 -11.70858 -11.54939 -11.40864 -10.91486 -10.81353 -10.66333 -10.53519 -10.32989 -10.19482 -9.70820 -9.59201 -8.78004 -8.52719 -6.90115 -6.04829 -3.46189 2.53858 3.22451 3.26060 3.32188 3.42488 3.46141 3.66728 4.03521 4.14009 4.45932 4.49523 4.69008 4.88649 4.93179 5.09165 5.29374 5.36185 5.38724 5.51186 5.67298 5.69934 5.77845 5.91589 5.93154 5.94369 6.11259 6.28311 6.39414 6.49831 6.57071 6.74248 6.89387 7.73654 7.97794 8.33220 8.43214 8.90309 9.64112 10.02264 11.10618 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.006013 C = 0.005555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.605497 B = 4655.613104 C = 5038.985988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 H 0.098 0.902 4 C 0.130 3.870 5 N -0.607 5.607 6 C 0.126 3.874 7 C -0.272 4.272 8 H 0.078 0.922 9 C 0.038 3.962 10 N -0.892 5.892 11 Si 0.871 3.129 12 H -0.284 1.284 13 H -0.299 1.299 14 H -0.270 1.270 15 N -0.702 5.702 16 C 0.556 3.444 17 O -0.529 6.529 18 C -0.236 4.236 19 C 0.305 3.695 20 F -0.190 7.190 21 F -0.200 7.200 22 C -0.124 4.124 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.013 0.987 30 H 0.042 0.958 31 H 0.019 0.981 32 H 0.264 0.736 33 H 0.390 0.610 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 -9.880 13.304 17.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.116 0.884 4 C 0.003 3.997 5 N -0.331 5.331 6 C -0.019 4.019 7 C -0.401 4.401 8 H 0.096 0.904 9 C -0.163 4.163 10 N -0.532 5.532 11 Si 0.701 3.299 12 H -0.212 1.212 13 H -0.226 1.226 14 H -0.194 1.194 15 N -0.353 5.353 16 C 0.341 3.659 17 O -0.405 6.405 18 C -0.241 4.241 19 C 0.251 3.749 20 F -0.171 7.171 21 F -0.182 7.182 22 C -0.161 4.161 23 C -0.168 4.168 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.226 0.774 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.891 -8.909 13.203 17.354 hybrid contribution -0.308 -0.915 -0.890 1.313 sum -7.199 -9.824 12.313 17.319 Atomic orbital electron populations 1.22150 0.96286 1.01310 1.02218 1.21865 0.92256 0.99632 0.84862 0.88444 1.21549 0.85309 0.97580 0.95262 1.43959 1.00042 1.20819 1.68230 1.21153 0.96300 0.89450 0.95021 1.18734 1.07142 1.10587 1.03588 0.90411 1.25474 0.97819 0.95839 0.97156 1.69909 1.46761 1.10944 1.25586 0.87020 0.79976 0.81446 0.81466 1.21228 1.22636 1.19445 1.46026 1.66366 1.13403 1.09495 1.18795 0.77830 0.86495 0.82823 1.90703 1.50481 1.15049 1.84308 1.22686 1.04225 1.03869 0.93274 1.20959 0.79814 0.84389 0.89774 1.93047 1.41706 1.85437 1.96906 1.92963 1.96409 1.66624 1.62176 1.23027 1.00574 0.98857 0.93659 1.23131 0.95660 1.02042 0.96003 0.91638 0.93035 0.92604 0.93786 0.91118 0.96855 0.93930 0.96250 0.92601 0.77428 0.87024 0.87449 0.86378 0.86758 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.22 2.88 -67.93 -0.20 2.02 16 3 H 0.10 2.22 7.58 -51.93 -0.39 1.83 16 4 C 0.13 2.60 4.15 -4.04 -0.02 2.58 16 5 N -0.61 -13.67 2.32 -181.12 -0.42 -14.09 16 6 C 0.13 2.31 10.23 59.85 0.61 2.92 16 7 C -0.27 -7.48 9.91 -15.06 -0.15 -7.63 16 8 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 9 C 0.04 1.09 5.26 -17.43 -0.09 0.99 16 10 N -0.89 -26.98 13.97 55.49 0.78 -26.21 16 11 Si 0.87 21.38 25.23 -169.99 -4.29 17.09 16 12 H -0.28 -6.67 6.65 56.52 0.38 -6.30 16 13 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 N -0.70 -11.20 4.42 -53.81 -0.24 -11.44 16 16 C 0.56 9.27 7.36 -10.99 -0.08 9.19 16 17 O -0.53 -10.79 15.92 5.56 0.09 -10.71 16 18 C -0.24 -3.07 2.37 -155.62 -0.37 -3.44 16 19 C 0.30 3.75 5.27 37.16 0.20 3.95 16 20 F -0.19 -2.87 17.29 2.25 0.04 -2.83 16 21 F -0.20 -2.30 15.92 2.25 0.04 -2.27 16 22 C -0.12 -1.44 9.69 -26.73 -0.26 -1.70 16 23 C -0.13 -1.31 9.63 -26.69 -0.26 -1.56 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.07 1.58 3.49 -51.93 -0.18 1.40 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.04 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.02 0.27 5.24 -51.93 -0.27 0.00 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.39 5.26 4.56 -40.82 -0.19 5.07 16 34 H 0.11 1.19 5.87 -51.93 -0.30 0.88 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.12 1.49 7.67 -51.93 -0.40 1.10 16 37 H 0.11 0.95 7.22 -51.93 -0.38 0.57 16 38 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -32.27 315.16 -4.59 -36.86 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.07 Total: 3.62 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.26 Total: 5.22 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.12 Total: -51.74 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.07 Total: -5.09 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.29 Total: 17.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.27 -4.59 -36.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754310874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.997 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds