Wall clock time and date at job start Mon Mar 30 2020 20:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 120.00246 * 2 1 4 4 H 1.07996 * 120.00102 * 200.35370 * 3 2 1 5 5 C 1.38813 * 119.99705 * 20.36194 * 3 2 1 6 6 N 1.31623 * 120.00312 * 14.98327 * 5 3 2 7 7 Si 1.86797 * 119.99908 * 194.98848 * 5 3 2 8 8 H 1.48505 * 109.47271 * 84.99931 * 7 5 3 9 9 H 1.48498 * 109.47415 * 205.00251 * 7 5 3 10 10 H 1.48500 * 109.47094 * 325.00189 * 7 5 3 11 11 C 1.46502 * 119.99944 * 179.97438 * 2 1 3 12 12 C 1.52991 * 109.47393 * 270.00776 * 11 2 1 13 13 N 1.46502 * 109.47393 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00462 * 180.02562 * 13 12 11 15 15 O 1.21276 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00166 * 180.02562 * 14 13 12 17 17 C 1.52999 * 109.47501 * 179.97438 * 16 14 13 18 18 C 1.53778 * 113.61721 * 184.99822 * 17 16 14 19 19 C 1.53781 * 87.17015 * 220.05922 * 18 17 16 20 20 F 1.39905 * 113.61781 * 139.93953 * 19 18 17 21 21 F 1.39901 * 113.61480 * 270.84165 * 19 18 17 22 22 C 1.53775 * 87.08521 * 25.38921 * 19 18 17 23 23 H 1.08996 * 109.47748 * 275.10001 * 1 2 3 24 24 H 1.09003 * 109.47121 * 35.10016 * 1 2 3 25 25 H 1.09000 * 109.47217 * 155.09210 * 1 2 3 26 26 H 0.96993 * 119.99614 * 180.02562 * 6 5 3 27 27 H 1.08996 * 109.46679 * 150.00351 * 11 2 1 28 28 H 1.09003 * 109.46794 * 30.00456 * 11 2 1 29 29 H 1.09002 * 109.47878 * 59.99809 * 12 11 2 30 30 H 1.08996 * 109.47282 * 299.99496 * 12 11 2 31 31 H 0.97002 * 119.99395 * 359.97438 * 13 12 11 32 32 H 1.08998 * 109.47636 * 59.98877 * 16 14 13 33 33 H 1.09003 * 109.46704 * 299.99293 * 16 14 13 34 34 H 1.09006 * 112.90213 * 316.25092 * 17 16 14 35 35 H 1.08992 * 113.61542 * 105.46813 * 18 17 16 36 36 H 1.09000 * 113.61422 * 334.64533 * 18 17 16 37 37 H 1.08999 * 113.61438 * 89.11609 * 22 19 18 38 38 H 1.09003 * 113.61808 * 219.93635 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3253 5 6 1.5207 2.3505 0.4183 6 7 0.3875 2.2836 1.0845 7 14 2.2825 4.0126 0.0357 8 1 1.8683 4.4460 -1.3230 9 1 1.8224 5.0099 1.0351 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2688 0.0006 12 6 2.4523 -1.7099 1.4431 13 7 3.1854 -2.9784 1.4437 14 6 3.5219 -3.5618 2.6111 15 8 3.2182 -3.0365 3.6612 16 6 4.2764 -4.8663 2.6116 17 6 4.5312 -5.3076 4.0542 18 6 5.4028 -6.5694 4.1677 19 6 4.4704 -7.0188 5.3050 20 9 4.1744 -8.3860 5.2800 21 9 4.8715 -6.5715 6.5684 22 6 3.3861 -6.1419 4.6567 23 1 -0.3634 0.0913 1.0235 24 1 -0.3633 0.8408 -0.5909 25 1 -0.3634 -0.9321 -0.4328 26 1 -0.0521 3.0974 1.3764 27 1 3.1499 -1.1386 -0.5133 28 1 1.6084 -2.0286 -0.5130 29 1 1.4999 -1.8401 1.9571 30 1 3.0414 -0.9502 1.9568 31 1 3.4279 -3.3987 0.6038 32 1 5.2290 -4.7353 2.0984 33 1 3.6882 -5.6263 2.0973 34 1 4.8604 -4.4903 4.6960 35 1 6.4231 -6.3675 4.4936 36 1 5.3587 -7.2111 3.2876 37 1 2.7897 -6.6658 3.9099 38 1 2.7774 -5.5959 5.3775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663213976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:35 Heat of formation + Delta-G solvation = -99.994352 kcal Electronic energy + Delta-G solvation = -21087.321413 eV Core-core repulsion = 17408.856123 eV Total energy + Delta-G solvation = -3678.465290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.139 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.00772 -47.34933 -39.78292 -37.92695 -36.03442 -34.13043 -31.48796 -30.42645 -27.85755 -26.53099 -25.89196 -23.99571 -22.72448 -20.68796 -20.37602 -19.92497 -17.65344 -17.07989 -16.79569 -16.71592 -16.41920 -15.68235 -15.34939 -14.73949 -14.69634 -14.22288 -13.88358 -13.68894 -13.61785 -13.39444 -13.25673 -12.83357 -12.76246 -12.32490 -12.20852 -11.53102 -11.40342 -11.25433 -11.10759 -10.90212 -10.86723 -10.65832 -10.61538 -10.31619 -10.01655 -9.92694 -9.60546 -8.67214 -8.57468 -6.87315 -5.76947 -3.22290 2.84909 3.23388 3.34251 3.38827 3.43863 3.45030 3.57124 4.02324 4.08144 4.16897 4.48584 4.80147 4.95646 5.09791 5.13417 5.20313 5.30337 5.37691 5.42849 5.53587 5.57538 5.60633 5.84116 5.95273 6.02133 6.23941 6.65388 6.68370 6.70799 6.94953 7.32504 7.67875 7.77533 7.78196 8.33111 8.48429 9.17849 9.80778 10.27953 11.28191 Molecular weight = 276.14amu Principal moments of inertia in cm(-1) A = 0.037908 B = 0.002848 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.448495 B = 9830.329651 C = 9995.867080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.504 3.496 15 O -0.541 6.541 16 C -0.130 4.130 17 C -0.087 4.087 18 C -0.162 4.162 19 C 0.251 3.749 20 F -0.194 7.194 21 F -0.180 7.180 22 C -0.159 4.159 23 H 0.031 0.969 24 H 0.045 0.955 25 H -0.001 1.001 26 H 0.254 0.746 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.395 0.605 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -19.378 1.818 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.319 5.319 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.016 3.984 12 C -0.032 4.032 13 N -0.377 5.377 14 C 0.289 3.711 15 O -0.418 6.418 16 C -0.170 4.170 17 C -0.106 4.106 18 C -0.200 4.200 19 C 0.215 3.785 20 F -0.175 7.175 21 F -0.161 7.161 22 C -0.197 4.197 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.018 0.982 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.228 0.772 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.983 -18.831 2.661 20.625 hybrid contribution 0.440 0.640 -0.220 0.807 sum 8.423 -18.191 2.441 20.194 Atomic orbital electron populations 1.20849 0.82162 0.95677 0.99655 1.43955 1.02071 1.00392 1.85491 1.19219 0.97167 0.84816 1.37915 0.91128 1.25015 0.97835 0.98557 0.98178 1.70087 1.18741 1.27023 1.39021 0.86239 0.78669 0.83802 0.77609 1.21388 1.21688 1.20506 1.20985 0.96331 0.88887 0.92222 1.22522 0.95725 0.82900 1.02067 1.46223 1.58282 1.25338 1.07886 1.20545 0.79976 0.86366 0.84229 1.90722 1.54629 1.65126 1.31320 1.21616 1.01870 0.96175 0.97306 1.22186 0.95188 0.96387 0.96825 1.24186 1.00076 0.98057 0.97680 1.22124 0.98966 0.76292 0.81143 1.93002 1.94057 1.33854 1.96603 1.93023 1.91539 1.88559 1.42945 1.24204 0.97407 0.96797 1.01263 0.95113 0.93587 0.98240 0.93596 0.93338 0.94004 0.92254 0.91376 0.77209 0.88259 0.88603 0.86716 0.88738 0.86923 0.87175 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 9.02 59.85 0.54 4.46 16 2 N -0.60 -14.71 2.93 -181.12 -0.53 -15.24 16 3 C -0.26 -7.10 9.68 -15.06 -0.15 -7.25 16 4 H 0.07 1.86 7.86 -52.49 -0.41 1.45 16 5 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 6 N -0.90 -26.37 10.67 55.49 0.59 -25.78 16 7 Si 0.91 21.76 29.58 -169.99 -5.03 16.73 16 8 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 C 0.14 2.76 5.82 -4.05 -0.02 2.73 16 12 C 0.09 1.76 6.00 -4.05 -0.02 1.73 16 13 N -0.73 -9.96 5.56 -60.30 -0.33 -10.30 16 14 C 0.50 7.00 7.83 -10.99 -0.09 6.92 16 15 O -0.54 -10.15 15.76 5.56 0.09 -10.07 16 16 C -0.13 -1.08 5.54 -27.88 -0.15 -1.24 16 17 C -0.09 -0.79 3.14 -89.72 -0.28 -1.07 16 18 C -0.16 -1.15 7.42 -25.92 -0.19 -1.34 16 19 C 0.25 2.43 3.28 -25.92 -0.08 2.35 16 20 F -0.19 -2.07 17.41 2.25 0.04 -2.03 16 21 F -0.18 -2.12 17.38 2.25 0.04 -2.08 16 22 C -0.16 -1.48 7.43 -25.83 -0.19 -1.67 16 23 H 0.03 0.81 7.40 -51.93 -0.38 0.43 16 24 H 0.05 1.20 7.21 -51.93 -0.37 0.82 16 25 H 0.00 -0.02 7.84 -51.93 -0.41 -0.43 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 28 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.39 3.94 8.47 -40.82 -0.35 3.59 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.58 7.85 -51.93 -0.41 0.17 16 34 H 0.11 1.29 7.68 -51.93 -0.40 0.89 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -32.86 326.02 -6.59 -39.45 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -5.63 Total: -1.22 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.73 Total: 5.61 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.27 Total: -51.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.86 -6.59 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663213976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.544 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds