Wall clock time and date at job start Mon Mar 30 2020 20:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.48883 * 2 1 4 4 C 1.53090 * 109.48312 * 239.96954 * 2 1 3 5 5 C 1.53173 * 109.16469 * 297.62504 * 4 2 1 6 6 H 1.08999 * 109.61936 * 62.92826 * 5 4 2 7 7 N 1.46498 * 109.54510 * 183.15103 * 5 4 2 8 8 C 1.38823 * 119.99850 * 204.55274 * 7 5 4 9 9 C 1.39796 * 119.58619 * 0.02879 * 8 7 5 10 10 C 1.38599 * 119.48869 * 179.97438 * 9 8 7 11 11 C 1.38390 * 118.68601 * 359.74516 * 10 9 8 12 12 C 1.40563 * 119.14449 * 0.49352 * 11 10 9 13 13 C 1.41310 * 119.78274 * 179.77221 * 12 11 10 14 14 H 1.07997 * 119.99798 * 359.72701 * 13 12 11 15 15 C 1.40025 * 119.99979 * 179.72660 * 13 12 11 16 16 N 1.30750 * 119.99989 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46811 * 180.02562 * 17 15 13 19 19 H 1.48503 * 109.46768 * 299.99563 * 17 15 13 20 20 H 1.48498 * 109.47283 * 59.99814 * 17 15 13 21 21 N 1.31962 * 119.58384 * 180.02562 * 8 7 5 22 22 C 1.53175 * 109.03772 * 303.02096 * 5 4 2 23 23 C 1.53088 * 109.16619 * 56.97617 * 22 5 4 24 24 O 1.42900 * 109.48091 * 120.02588 * 2 1 3 25 25 H 1.08996 * 109.47622 * 299.97367 * 1 2 3 26 26 H 1.09005 * 109.46986 * 59.97731 * 1 2 3 27 27 H 1.09006 * 109.47063 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47244 * 180.02562 * 3 2 1 29 29 H 1.09010 * 109.46843 * 300.02730 * 3 2 1 30 30 H 1.08992 * 109.47306 * 60.02509 * 3 2 1 31 31 H 1.08999 * 109.52672 * 177.71807 * 4 2 1 32 32 H 1.09000 * 109.52446 * 57.53312 * 4 2 1 33 33 H 0.97000 * 120.00013 * 24.55858 * 7 5 4 34 34 H 1.07998 * 120.25503 * 359.94888 * 9 8 7 35 35 H 1.08003 * 120.65878 * 180.02562 * 10 9 8 36 36 H 1.07993 * 120.42857 * 180.26558 * 11 10 9 37 37 H 0.97001 * 119.99761 * 179.97438 * 16 15 13 38 38 H 1.08996 * 109.53031 * 176.88810 * 22 5 4 39 39 H 1.09006 * 109.51977 * 297.00952 * 22 5 4 40 40 H 1.09000 * 109.48057 * 62.37601 * 23 22 5 41 41 H 1.08999 * 109.48512 * 182.41407 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4424 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5758 -2.1813 -1.2121 6 1 0.4869 -2.2194 -1.2415 7 7 2.1226 -2.8996 -2.3659 8 6 1.4806 -4.0331 -2.8458 9 6 0.3126 -4.4811 -2.2218 10 6 -0.3270 -5.6126 -2.7029 11 6 0.2120 -6.2654 -3.7977 12 6 1.3918 -5.7688 -4.3784 13 6 1.9564 -6.4276 -5.4937 14 1 1.4840 -7.3122 -5.8944 15 6 3.1284 -5.9335 -6.0793 16 7 3.7001 -4.8622 -5.5944 17 14 3.8745 -6.8040 -7.5541 18 1 5.1028 -6.0877 -7.9824 19 1 4.2201 -8.1996 -7.1824 20 1 2.8942 -6.8170 -8.6694 21 7 1.9806 -4.6740 -3.8853 22 6 2.0765 -2.8322 0.0810 23 6 1.5646 -2.0284 1.2791 24 8 2.0065 -0.6741 1.1664 25 1 -0.3634 0.5134 0.8902 26 1 -0.3633 0.5142 -0.8898 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1304 1.4420 -0.0005 29 1 1.6768 1.9564 -0.8898 30 1 1.6776 1.9562 0.8901 31 1 3.1298 -0.6874 -1.2709 32 1 1.6422 -0.2358 -2.1398 33 1 2.9332 -2.5832 -2.7945 34 1 -0.0880 -3.9498 -1.3712 35 1 -1.2307 -5.9751 -2.2356 36 1 -0.2656 -7.1472 -4.1984 37 1 4.5122 -4.5201 -5.9999 38 1 1.7038 -3.8546 0.1422 39 1 3.1665 -2.8409 0.0860 40 1 0.4750 -2.0550 1.2959 41 1 1.9531 -2.4621 2.2006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:29 Heat of formation + Delta-G solvation = -16.633939 kcal Electronic energy + Delta-G solvation = -21751.125889 eV Core-core repulsion = 18630.504907 eV Total energy + Delta-G solvation = -3120.620981 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08770 -38.14797 -35.45595 -33.63469 -33.35695 -31.48834 -30.18518 -28.81641 -27.49562 -27.28032 -25.34009 -23.70856 -21.91902 -21.44933 -20.14442 -19.15302 -17.37160 -16.58286 -16.05090 -15.84028 -15.06912 -14.81145 -14.59748 -14.22044 -14.03948 -13.78635 -13.19018 -12.97614 -12.79668 -12.52033 -12.33044 -12.17482 -11.95299 -11.82922 -11.63532 -11.29881 -11.12198 -11.10724 -10.99468 -10.75468 -10.61551 -10.39653 -10.04059 -9.92925 -9.47532 -9.43391 -8.87353 -7.91115 -7.49948 -6.50673 -6.31933 -4.46953 2.89546 3.10651 3.13312 3.24418 3.30917 3.73605 3.98792 4.11447 4.70788 4.79217 4.83229 4.96604 5.04781 5.27545 5.31892 5.44908 5.46773 5.51093 5.60859 5.69405 5.76123 5.85027 5.95804 6.04555 6.05585 6.10235 6.15787 6.21956 6.29924 6.44874 6.64147 6.86065 6.90442 6.96058 7.25894 7.29492 7.60567 7.81988 7.93026 8.17113 8.37886 8.69757 8.81149 9.13173 10.25639 10.41283 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.027077 B = 0.004326 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.836797 B = 6471.627137 C = 7065.247510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 C -0.136 4.136 4 C -0.149 4.149 5 C 0.166 3.834 6 H 0.078 0.922 7 N -0.733 5.733 8 C 0.413 3.587 9 C -0.369 4.369 10 C -0.032 4.032 11 C -0.317 4.317 12 C 0.293 3.707 13 C -0.435 4.435 14 H 0.082 0.918 15 C 0.072 3.928 16 N -0.716 5.716 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.265 1.265 20 H -0.265 1.265 21 N -0.532 5.532 22 C -0.171 4.171 23 C 0.062 3.938 24 O -0.377 6.377 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.270 0.730 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.298 9.318 9.097 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.187 4.187 5 C 0.059 3.941 6 H 0.096 0.904 7 N -0.368 5.368 8 C 0.173 3.827 9 C -0.395 4.395 10 C -0.056 4.056 11 C -0.340 4.340 12 C 0.166 3.834 13 C -0.467 4.467 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.338 5.338 17 Si 0.729 3.271 18 H -0.204 1.204 19 H -0.190 1.190 20 H -0.190 1.190 21 N -0.253 5.253 22 C -0.211 4.211 23 C -0.015 4.015 24 O -0.296 6.296 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.229 0.771 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.377 9.869 8.921 13.375 hybrid contribution -0.309 -0.841 -0.584 1.070 sum -1.687 9.028 8.337 12.404 Atomic orbital electron populations 1.22483 0.95761 1.03006 1.02636 1.21407 0.93085 0.92681 0.85184 1.21748 1.01953 0.93336 1.02317 1.22467 1.02216 0.95705 0.98314 1.20668 0.98333 0.89626 0.85449 0.90449 1.44209 1.30416 1.28765 1.33368 1.18533 0.87856 0.86291 0.90010 1.20605 1.03644 1.05848 1.09382 1.20592 0.96461 0.93905 0.94672 1.21527 1.03187 1.05643 1.03691 1.18193 0.87447 0.87112 0.90668 1.19551 1.06851 1.10133 1.10176 0.89958 1.26045 0.96831 0.94573 0.97882 1.70145 1.13744 1.16109 1.33782 0.86441 0.78735 0.80300 0.81594 1.20351 1.19010 1.19005 1.68224 1.33380 1.11286 1.12424 1.22753 1.02296 1.00763 0.95278 1.22574 0.98689 0.81838 0.98412 1.87928 1.73843 1.24823 1.43002 0.91925 0.91381 0.91604 0.91817 0.91126 0.91920 0.90739 0.90464 0.77077 0.89260 0.89028 0.88769 0.91900 0.90260 0.91120 0.92956 0.89076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 7.94 37.16 0.29 -1.65 16 2 C 0.12 1.37 1.11 -90.57 -0.10 1.27 16 3 C -0.14 -1.33 8.85 37.16 0.33 -1.01 16 4 C -0.15 -1.98 4.39 -26.60 -0.12 -2.09 16 5 C 0.17 2.64 1.91 -67.75 -0.13 2.51 16 6 H 0.08 1.27 4.93 -51.93 -0.26 1.01 16 7 N -0.73 -14.73 5.25 -53.73 -0.28 -15.02 16 8 C 0.41 10.08 7.63 -155.32 -1.18 8.90 16 9 C -0.37 -8.47 8.87 -38.87 -0.34 -8.82 16 10 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 11 C -0.32 -8.10 9.83 -38.65 -0.38 -8.48 16 12 C 0.29 8.22 6.55 -85.00 -0.56 7.66 16 13 C -0.44 -11.89 9.14 -37.75 -0.34 -12.24 16 14 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 15 C 0.07 1.85 5.50 -17.34 -0.10 1.76 16 16 N -0.72 -19.18 11.46 55.55 0.64 -18.54 16 17 Si 0.91 18.85 29.56 -169.99 -5.02 13.83 16 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 N -0.53 -14.77 7.89 -10.33 -0.08 -14.85 16 22 C -0.17 -2.54 5.64 -26.60 -0.15 -2.69 16 23 C 0.06 0.77 6.52 37.20 0.24 1.01 16 24 O -0.38 -4.98 10.24 -35.23 -0.36 -5.34 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.75 4.98 -51.93 -0.26 0.49 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.39 8.03 8.72 -40.82 -0.36 7.67 16 34 H 0.09 1.82 6.01 -52.49 -0.32 1.50 16 35 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.09 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 38 H 0.08 1.28 7.63 -51.93 -0.40 0.89 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 323.85 15.07 4.88 4.88 Total: -1.00 -29.76 323.85 -9.28 -39.03 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.11 Total: 11.03 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.94 Total: -15.02 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.27 Total: -48.41 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.36 Total: -5.34 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.76 -9.28 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.401 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds