Wall clock time and date at job start Mon Mar 30 2020 20:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38679 * 119.27931 * 2 1 4 4 C 1.38007 * 119.62813 * 180.02562 * 3 2 1 5 5 C 1.41003 * 118.28230 * 359.75095 * 4 3 2 6 6 C 1.41015 * 120.70865 * 180.24228 * 5 4 3 7 7 H 1.07998 * 120.00312 * 201.28583 * 6 5 4 8 8 C 1.39949 * 119.99813 * 21.29152 * 6 5 4 9 9 N 1.30866 * 120.00181 * 18.94139 * 8 6 5 10 10 Si 1.86803 * 119.99965 * 198.94271 * 8 6 5 11 11 H 1.48497 * 109.46900 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47143 * 119.99862 * 10 8 6 13 13 H 1.48495 * 109.47157 * 239.99905 * 10 8 6 14 14 C 1.41703 * 118.58599 * 0.48902 * 5 4 3 15 15 N 1.38094 * 119.90502 * 179.77640 * 14 5 4 16 16 C 1.46849 * 110.99972 * 244.49875 * 15 14 5 17 17 C 1.53044 * 109.57271 * 174.19329 * 16 15 14 18 18 H 1.09005 * 109.45507 * 299.17430 * 17 16 15 19 19 O 1.42904 * 109.55543 * 179.06051 * 17 16 15 20 20 C 1.53119 * 109.27935 * 59.08743 * 17 16 15 21 21 C 1.53114 * 109.20797 * 302.44186 * 20 17 16 22 22 C 1.46852 * 110.99888 * 120.29428 * 15 14 5 23 23 H 1.08998 * 109.46575 * 65.82491 * 22 15 14 24 24 C 1.52998 * 109.46069 * 305.85419 * 22 15 14 25 25 N 1.31971 * 119.27219 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.46701 * 269.98143 * 1 2 3 27 27 H 1.09001 * 109.46936 * 29.97405 * 1 2 3 28 28 H 1.09000 * 109.46883 * 149.97465 * 1 2 3 29 29 H 1.07998 * 120.18474 * 0.02562 * 3 2 1 30 30 H 1.07998 * 120.86071 * 180.02562 * 4 3 2 31 31 H 0.96999 * 120.00385 * 179.97438 * 9 8 6 32 32 H 1.08997 * 109.46653 * 294.17709 * 16 15 14 33 33 H 1.09000 * 109.45994 * 54.15093 * 16 15 14 34 34 H 0.96696 * 114.00198 * 180.16817 * 19 17 16 35 35 H 1.08996 * 109.52311 * 182.50316 * 20 17 16 36 36 H 1.09003 * 109.52180 * 62.37607 * 20 17 16 37 37 H 1.09006 * 109.50361 * 177.56225 * 21 20 17 38 38 H 1.09002 * 109.50566 * 297.67685 * 21 20 17 39 39 H 1.09004 * 109.47064 * 305.90566 * 24 22 15 40 40 H 1.09004 * 109.47177 * 65.90422 * 24 22 15 41 41 H 1.09005 * 109.47194 * 185.90449 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2096 0.0000 4 6 3.5653 1.2180 -0.0005 5 6 4.2410 -0.0196 0.0043 6 6 5.6502 -0.0707 0.0092 7 1 6.1594 -0.9619 -0.3268 8 6 6.3889 1.0334 0.4494 9 7 5.8180 1.9500 1.1887 10 14 8.1898 1.1989 -0.0183 11 1 8.5928 0.0392 -0.8537 12 1 8.3885 2.4543 -0.7863 13 1 9.0196 1.2350 1.2126 14 6 3.4737 -1.2109 -0.0011 15 7 4.1074 -2.4379 -0.0012 16 6 3.8292 -3.1738 -1.2412 17 6 4.6587 -4.4595 -1.2715 18 1 5.7191 -4.2082 -1.2435 19 8 4.3714 -5.1861 -2.4680 20 6 4.3046 -5.3184 -0.0544 21 6 4.5575 -4.5118 1.2222 22 6 3.7298 -3.2253 1.1795 23 1 2.6706 -3.4766 1.1250 24 6 3.9948 -2.4063 2.4444 25 7 2.1523 -1.1512 -0.0005 26 1 -0.3633 -0.0003 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6366 2.1398 0.0004 30 1 4.1136 2.1485 -0.0001 31 1 6.3301 2.7151 1.4942 32 1 2.7695 -3.4253 -1.2844 33 1 4.0902 -2.5529 -2.0982 34 1 4.8616 -6.0153 -2.5520 35 1 4.9250 -6.2146 -0.0480 36 1 3.2536 -5.6033 -0.1030 37 1 4.2661 -5.1033 2.0902 38 1 5.6162 -4.2613 1.2907 39 1 5.0303 -2.0657 2.4464 40 1 3.3286 -1.5438 2.4650 41 1 3.8144 -3.0259 3.3229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164123721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:02 Heat of formation + Delta-G solvation = -26.403562 kcal Electronic energy + Delta-G solvation = -22536.997722 eV Core-core repulsion = 19415.953098 eV Total energy + Delta-G solvation = -3121.044624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.59207 -37.87525 -35.92686 -34.24189 -32.75230 -30.97555 -30.82062 -29.52704 -27.72721 -26.16223 -24.34226 -23.22717 -21.53838 -20.88332 -20.29787 -19.07902 -17.30875 -17.13540 -15.71141 -15.55273 -14.69289 -14.52161 -14.28779 -14.05260 -13.78823 -13.33237 -13.10921 -12.82096 -12.55700 -12.31118 -11.92264 -11.81896 -11.64062 -11.48572 -11.41057 -11.17939 -11.07035 -10.90641 -10.88472 -10.50105 -10.37950 -10.25999 -10.02070 -9.77019 -9.50924 -9.31042 -8.35637 -8.11517 -7.48736 -7.37240 -6.84548 -4.37059 2.57792 2.89636 3.03522 3.09594 3.19243 3.86290 4.21602 4.55009 4.95202 5.06778 5.17963 5.33973 5.52981 5.62500 5.75222 5.83267 5.90597 6.09541 6.11086 6.12440 6.18597 6.24229 6.34748 6.39501 6.42605 6.45061 6.49622 6.54210 6.59572 6.81560 6.91604 6.98560 7.04350 7.14201 7.19150 7.61890 7.74821 7.81097 7.94870 8.03890 8.33118 8.60818 8.71205 8.96770 9.64361 10.03257 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.008407 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.893465 B = 3329.771600 C = 4595.089909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.014 4.014 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.093 3.907 6 C -0.411 4.411 7 H 0.093 0.907 8 C 0.070 3.930 9 N -0.785 5.785 10 Si 0.909 3.091 11 H -0.257 1.257 12 H -0.272 1.272 13 H -0.274 1.274 14 C 0.159 3.841 15 N -0.444 5.444 16 C 0.075 3.925 17 C 0.106 3.894 18 H 0.063 0.937 19 O -0.570 6.570 20 C -0.149 4.149 21 C -0.109 4.109 22 C 0.092 3.908 23 H 0.041 0.959 24 C -0.134 4.134 25 N -0.485 5.485 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.130 0.870 31 H 0.282 0.718 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.373 0.627 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 -7.314 -0.346 7.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C -0.164 4.164 4 C -0.169 4.169 5 C 0.087 3.913 6 C -0.440 4.440 7 H 0.111 0.889 8 C -0.149 4.149 9 N -0.409 5.409 10 Si 0.733 3.267 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.200 1.200 14 C -0.073 4.073 15 N -0.168 5.168 16 C -0.053 4.053 17 C 0.047 3.953 18 H 0.081 0.919 19 O -0.375 6.375 20 C -0.187 4.187 21 C -0.147 4.147 22 C -0.016 4.016 23 H 0.059 0.941 24 C -0.191 4.191 25 N -0.196 5.196 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.219 0.781 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.013 -7.271 -0.289 7.277 hybrid contribution 0.781 0.422 0.036 0.889 sum 0.768 -6.849 -0.254 6.897 Atomic orbital electron populations 1.20255 0.92010 1.00525 1.00139 1.19958 0.94371 0.88302 1.12804 1.21408 0.95376 0.96838 1.02750 1.21698 0.92384 0.98854 1.03972 1.18064 0.94062 0.89776 0.89447 1.19608 0.90950 0.99456 1.33968 0.88853 1.26098 1.01385 0.94788 0.92589 1.69843 1.38731 1.09234 1.23118 0.86238 0.81574 0.79503 0.79401 1.18049 1.19748 1.19952 1.19089 0.86188 0.89394 1.12584 1.59321 1.55913 1.01203 1.00326 1.21772 0.97409 0.92550 0.93590 1.21840 0.99047 0.91578 0.82808 0.91884 1.86484 1.70396 1.38358 1.42224 1.22284 1.01849 0.98341 0.96189 1.21593 1.01385 0.95503 0.96251 1.21510 0.96698 0.92238 0.91174 0.94081 1.21678 1.03255 0.99411 0.94777 1.66736 1.11208 1.30275 1.11427 0.93529 0.93123 0.92980 0.88614 0.85251 0.90720 0.94172 0.90878 0.78139 0.92271 0.91738 0.91871 0.90992 0.91482 0.92567 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.33 10.15 36.01 0.37 -0.97 16 2 C -0.01 -0.32 6.79 -82.37 -0.56 -0.88 16 3 C -0.14 -3.34 9.69 -39.50 -0.38 -3.72 16 4 C -0.14 -3.62 8.83 -38.62 -0.34 -3.96 16 5 C 0.09 2.38 5.63 -106.47 -0.60 1.78 16 6 C -0.41 -10.33 8.74 -37.89 -0.33 -10.66 16 7 H 0.09 2.33 7.55 -52.49 -0.40 1.94 16 8 C 0.07 1.67 5.17 -17.32 -0.09 1.58 16 9 N -0.78 -19.15 10.85 55.55 0.60 -18.54 16 10 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 16 11 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 14 C 0.16 3.87 3.76 -155.02 -0.58 3.29 16 15 N -0.44 -9.51 3.64 -165.15 -0.60 -10.11 16 16 C 0.07 1.50 4.94 -3.83 -0.02 1.48 16 17 C 0.11 1.71 3.63 -26.65 -0.10 1.62 16 18 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 19 O -0.57 -8.52 13.33 -35.23 -0.47 -8.99 16 20 C -0.15 -2.10 5.62 -26.61 -0.15 -2.25 16 21 C -0.11 -1.67 5.37 -26.65 -0.14 -1.81 16 22 C 0.09 1.75 2.24 -67.72 -0.15 1.60 16 23 H 0.04 0.85 7.98 -51.93 -0.41 0.43 16 24 C -0.13 -2.61 8.81 37.16 0.33 -2.29 16 25 N -0.48 -11.75 9.60 -8.11 -0.08 -11.83 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.13 3.32 6.07 -52.49 -0.32 3.01 16 31 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 32 H 0.04 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.07 1.58 8.10 -51.93 -0.42 1.15 16 34 H 0.37 3.64 9.08 45.56 0.41 4.05 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.06 1.27 7.32 -51.93 -0.38 0.89 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -27.81 329.60 -9.08 -36.89 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.72 Total: 9.91 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.75 Total: -15.19 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -0.08 Total: -40.49 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.47 Total: -8.99 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.81 -9.08 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164123721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -27.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds