Wall clock time and date at job start Mon Mar 30 2020 20:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31363 * 1 3 3 Si 1.86791 * 119.99990 * 2 1 4 4 H 1.48503 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47402 * 299.99729 * 3 2 1 6 6 H 1.48496 * 109.47417 * 60.00155 * 3 2 1 7 7 C 1.38906 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99699 * 179.97438 * 7 2 1 9 9 O 1.34776 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.34717 * 117.00013 * 179.97438 * 9 7 2 11 11 O 1.21515 * 120.00226 * 0.02562 * 10 9 7 12 12 C 1.47664 * 120.00250 * 179.97438 * 10 9 7 13 13 C 1.38983 * 121.11059 * 354.18786 * 12 10 9 14 14 C 1.39393 * 119.55048 * 180.02562 * 13 12 10 15 15 Cl 1.73596 * 119.06882 * 179.97438 * 14 13 12 16 16 N 1.31126 * 121.86220 * 0.02562 * 14 13 12 17 17 C 1.33577 * 121.84008 * 359.95418 * 16 14 13 18 18 C 1.40700 * 120.95437 * 180.02562 * 17 16 14 19 19 C 1.36087 * 119.74251 * 180.02562 * 18 17 16 20 20 C 1.39315 * 121.04696 * 0.02562 * 19 18 17 21 21 C 1.36288 * 120.82857 * 359.97438 * 20 19 18 22 22 C 1.40056 * 119.64750 * 0.02562 * 21 20 19 23 23 H 0.96996 * 119.99843 * 0.02562 * 1 2 3 24 24 H 1.07995 * 120.21893 * 359.97438 * 13 12 10 25 25 H 1.08002 * 120.12555 * 0.02562 * 18 17 16 26 26 H 1.07999 * 119.47388 * 180.02562 * 19 18 17 27 27 H 1.07998 * 119.59112 * 179.72514 * 20 19 18 28 28 H 1.07995 * 120.17881 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7076 1.3463 -0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8889 2.3964 1.2125 7 6 2.0081 -1.2030 -0.0005 8 1 3.0880 -1.2030 -0.0010 9 8 1.3341 -2.3702 -0.0005 10 6 2.0678 -3.5000 -0.0016 11 8 3.2813 -3.4365 -0.0021 12 6 1.3974 -4.8157 -0.0011 13 6 0.0168 -4.9182 0.1210 14 6 -0.5821 -6.1769 0.1181 15 17 -2.3076 -6.2903 0.2720 16 7 0.1210 -7.2777 0.0034 17 6 1.4510 -7.2549 -0.1180 18 6 2.1871 -8.4478 -0.2405 19 6 3.5415 -8.3958 -0.3623 20 6 4.2162 -7.1770 -0.3675 21 6 3.5361 -6.0017 -0.2510 22 6 2.1415 -6.0179 -0.1239 23 1 -0.4850 0.8400 -0.0004 24 1 -0.5878 -4.0286 0.2182 25 1 1.6791 -9.4009 -0.2377 26 1 4.1022 -9.3141 -0.4564 27 1 5.2921 -7.1634 -0.4611 28 1 4.0698 -5.0628 -0.2559 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007887174.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:31 Heat of formation + Delta-G solvation = -24.793492 kcal Electronic energy + Delta-G solvation = -18122.668502 eV Core-core repulsion = 14937.184915 eV Total energy + Delta-G solvation = -3185.483587 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 277.029 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81286 -39.00047 -37.31585 -36.10779 -35.59454 -33.19728 -32.47960 -30.26238 -29.94102 -26.18746 -24.57518 -23.44476 -22.62154 -20.52803 -18.35980 -17.91642 -17.52561 -16.88911 -15.85252 -15.04825 -14.92554 -14.71552 -14.41158 -14.27324 -14.21033 -13.79162 -13.00224 -12.64240 -12.45602 -11.86287 -11.58906 -11.49677 -11.34101 -11.11357 -10.91742 -10.80879 -10.55930 -10.18529 -10.12836 -9.93201 -8.91550 -8.86949 -8.58866 -8.11710 -6.74241 -4.31568 0.20569 0.84528 1.85986 1.88567 2.81746 3.01189 3.03865 3.11944 3.57232 3.63230 4.14579 4.24808 4.45390 4.80396 4.89385 4.94275 5.07111 5.19768 5.39921 5.42130 5.70894 5.84419 6.12735 6.25352 6.36928 6.41319 6.64718 6.72410 6.96200 7.14081 7.64582 7.75059 8.44272 8.72668 9.50889 10.41615 Molecular weight = 277.03amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.005846 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.547243 B = 4788.804901 C = 6350.263162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.042 3.958 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.365 4.365 8 H 0.105 0.895 9 O -0.189 6.189 10 C 0.421 3.579 11 O -0.544 6.544 12 C -0.007 4.007 13 C -0.126 4.126 14 C 0.207 3.793 15 Cl -0.030 7.030 16 N -0.471 5.471 17 C 0.141 3.859 18 C -0.104 4.104 19 C -0.096 4.096 20 C -0.129 4.129 21 C -0.089 4.089 22 C -0.074 4.074 23 H 0.277 0.723 24 H 0.164 0.836 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -11.056 -0.283 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.441 4.441 8 H 0.123 0.877 9 O -0.095 6.095 10 C 0.271 3.729 11 O -0.444 6.444 12 C -0.017 4.017 13 C -0.147 4.147 14 C 0.029 3.971 15 Cl -0.002 7.002 16 N -0.183 5.183 17 C 0.019 3.981 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.148 4.148 21 C -0.106 4.106 22 C -0.076 4.076 23 H 0.087 0.913 24 H 0.182 0.818 25 H 0.153 0.847 26 H 0.146 0.854 27 H 0.145 0.855 28 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.168 -11.711 -0.276 11.772 hybrid contribution 0.385 1.441 0.026 1.491 sum 1.553 -10.270 -0.250 10.390 Atomic orbital electron populations 1.69954 1.06297 1.28644 1.42565 1.25542 0.95953 0.99350 0.95710 0.85499 0.79583 0.79130 0.78475 1.18553 1.19792 1.19784 1.21568 0.92954 0.79374 1.50171 0.87720 1.83854 1.39453 1.13359 1.72786 1.20184 0.85732 0.84691 0.82343 1.90443 1.14534 1.86581 1.52868 1.19683 0.92528 0.91954 0.97517 1.22261 0.94733 0.97856 0.99866 1.21652 0.87431 0.89665 0.98384 1.98398 1.07624 1.98538 1.95612 1.67019 1.07127 1.30553 1.13643 1.18551 0.87600 0.92779 0.99143 1.20666 0.93568 0.96395 1.01639 1.20935 0.94022 0.98336 0.98266 1.21069 1.00469 0.92181 1.01043 1.22229 0.92736 1.01484 0.94196 1.18721 0.95405 0.91890 1.01585 0.91330 0.81807 0.84718 0.85420 0.85474 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.72 13.67 55.49 0.76 -21.97 15 2 C 0.04 1.09 5.50 -17.50 -0.10 0.99 15 3 Si 0.95 19.63 29.55 -169.99 -5.02 14.61 15 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.37 -10.02 9.65 30.98 0.30 -9.72 15 8 H 0.11 2.86 6.86 -52.49 -0.36 2.50 15 9 O -0.19 -5.11 9.10 -21.38 -0.19 -5.30 15 10 C 0.42 10.19 7.81 34.58 0.27 10.46 15 11 O -0.54 -13.59 12.77 -19.28 -0.25 -13.83 15 12 C -0.01 -0.15 5.93 -104.37 -0.62 -0.77 15 13 C -0.13 -2.38 9.44 -38.88 -0.37 -2.75 15 14 C 0.21 3.60 7.26 -17.42 -0.13 3.48 15 15 Cl -0.03 -0.45 29.08 -51.86 -1.51 -1.96 15 16 N -0.47 -8.26 10.26 -8.14 -0.08 -8.34 15 17 C 0.14 2.42 6.61 -84.87 -0.56 1.86 15 18 C -0.10 -1.43 9.98 -39.43 -0.39 -1.82 15 19 C -0.10 -1.14 9.94 -39.95 -0.40 -1.54 15 20 C -0.13 -1.74 9.96 -39.88 -0.40 -2.14 15 21 C -0.09 -1.53 9.25 -39.60 -0.37 -1.89 15 22 C -0.07 -1.38 5.77 -106.50 -0.61 -1.99 15 23 H 0.28 6.79 8.31 -40.82 -0.34 6.45 15 24 H 0.16 3.12 7.70 -52.49 -0.40 2.72 15 25 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.13 1.07 8.06 -52.49 -0.42 0.65 15 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 28 H 0.17 3.31 4.98 -52.49 -0.26 3.05 15 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -29.17 274.86 -6.95 -36.12 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -1.43 Total: 2.38 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -3.37 Total: -5.85 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.67 Total: -30.31 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.44 Total: -19.14 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.51 Total: -1.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.17 -6.95 -36.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007887174.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.325 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds