Wall clock time and date at job start Mon Mar 30 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38007 * 120.00827 * 2 1 4 4 C 1.38214 * 120.23018 * 180.25074 * 3 2 1 5 5 C 1.39004 * 120.23385 * 359.45055 * 4 3 2 6 6 N 1.39957 * 119.99717 * 180.27353 * 5 4 3 7 7 C 1.34775 * 120.00009 * 148.90738 * 6 5 4 8 8 O 1.21288 * 119.99763 * 354.23547 * 7 6 5 9 9 C 1.50697 * 119.99954 * 174.23085 * 7 6 5 10 10 C 1.53007 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47087 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99892 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99730 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00597 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99965 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47144 * 59.99725 * 15 13 11 17 17 H 1.48497 * 109.47525 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46974 * 299.99930 * 15 13 11 19 19 C 1.38579 * 120.00439 * 0.29236 * 5 4 3 20 20 C 1.39551 * 119.77402 * 359.97438 * 19 5 4 21 21 C 1.47746 * 120.11600 * 180.02562 * 20 19 5 22 22 O 1.21469 * 119.99978 * 173.72784 * 21 20 19 23 23 O 1.34713 * 119.99590 * 353.73210 * 21 20 19 24 24 H 1.09003 * 109.47209 * 262.75727 * 1 2 3 25 25 H 1.08996 * 109.46750 * 22.75451 * 1 2 3 26 26 H 1.09001 * 109.47070 * 142.75887 * 1 2 3 27 27 H 1.08003 * 119.88212 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.88691 * 179.72338 * 4 3 2 29 29 H 0.97001 * 119.99783 * 328.91138 * 6 5 4 30 30 H 1.08999 * 109.47078 * 299.99919 * 9 7 6 31 31 H 1.09000 * 109.47066 * 60.00150 * 9 7 6 32 32 H 1.08993 * 109.47171 * 300.00619 * 10 9 7 33 33 H 1.09005 * 109.46717 * 60.00423 * 10 9 7 34 34 H 0.96994 * 120.00560 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.11425 * 179.97438 * 19 5 4 36 36 H 0.96699 * 116.99251 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1951 0.0000 4 6 3.5793 1.2004 -0.0052 5 6 4.2839 0.0022 0.0010 6 7 5.6834 0.0135 0.0014 7 6 6.3651 -0.9776 0.6094 8 8 5.7698 -1.8219 1.2448 9 6 7.8669 -1.0366 0.4996 10 6 8.3876 -2.2492 1.2740 11 6 9.8894 -2.3086 1.1637 12 1 10.4194 -1.5565 0.5982 13 6 10.5866 -3.3231 1.7846 14 7 9.9412 -4.2387 2.4737 15 14 12.4482 -3.3964 1.6485 16 1 13.0353 -2.1569 2.2177 17 1 12.9535 -4.5740 2.3989 18 1 12.8356 -3.5169 0.2200 19 6 3.6007 -1.2034 0.0064 20 6 2.2052 -1.2092 0.0060 21 6 1.4692 -2.4902 0.0123 22 8 0.2599 -2.4953 0.1269 23 8 2.1392 -3.6526 -0.1090 24 1 -0.3634 -0.1296 1.0195 25 1 -0.3633 0.9477 -0.3975 26 1 -0.3633 -0.8181 -0.6219 27 1 1.6554 2.1294 0.0004 28 1 4.1138 2.1389 -0.0097 29 1 6.1628 0.7346 -0.4358 30 1 8.1513 -1.1261 -0.5488 31 1 8.2978 -0.1264 0.9166 32 1 8.1031 -2.1603 2.3224 33 1 7.9567 -3.1593 0.8565 34 1 10.4317 -4.9522 2.9108 35 1 4.1464 -2.1355 0.0108 36 1 1.6144 -4.4647 -0.0999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607799310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:26 Heat of formation + Delta-G solvation = -110.990914 kcal Electronic energy + Delta-G solvation = -20526.650665 eV Core-core repulsion = 17168.386302 eV Total energy + Delta-G solvation = -3358.264363 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.83328 -39.89607 -38.32303 -36.24192 -34.86194 -33.55787 -31.80511 -31.50607 -30.76788 -27.08681 -25.50169 -24.59389 -22.65703 -21.91614 -20.61903 -19.81365 -18.36281 -17.65957 -17.02242 -15.97543 -15.90153 -15.77601 -15.52311 -15.23510 -14.62626 -14.47679 -13.92785 -13.67998 -13.34232 -13.31074 -12.80982 -12.36397 -12.21565 -12.12091 -11.99215 -11.70273 -11.54254 -11.23076 -10.95275 -10.66722 -10.31068 -10.19583 -10.03738 -9.76070 -9.35287 -9.17732 -9.09576 -8.36922 -8.03178 -6.00379 -4.05472 0.57135 1.20560 2.40990 2.95355 3.00141 3.23065 3.31782 3.37072 3.38597 3.69315 4.43553 4.57940 4.78403 4.85160 5.00899 5.23786 5.29769 5.34654 5.38584 5.60185 5.65453 5.80926 5.89835 6.05301 6.09086 6.10240 6.19180 6.31893 6.39226 6.52879 6.77003 6.89769 7.57152 7.68236 7.77779 7.84280 8.00586 8.30345 8.50201 9.02176 9.58476 11.10424 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029620 B = 0.003473 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.087274 B = 8060.038155 C = 8865.295631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 C -0.115 4.115 4 C -0.113 4.113 5 C 0.140 3.860 6 N -0.685 5.685 7 C 0.508 3.492 8 O -0.509 6.509 9 C -0.128 4.128 10 C 0.036 3.964 11 C -0.530 4.530 12 H 0.056 0.944 13 C 0.059 3.941 14 N -0.889 5.889 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.064 4.064 20 C -0.115 4.115 21 C 0.530 3.470 22 O -0.515 6.515 23 O -0.505 6.505 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.411 0.589 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.156 0.844 36 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.972 10.886 -7.818 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.046 4.046 3 C -0.133 4.133 4 C -0.134 4.134 5 C 0.045 3.955 6 N -0.332 5.332 7 C 0.298 3.702 8 O -0.382 6.382 9 C -0.168 4.168 10 C -0.001 4.001 11 C -0.568 4.568 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.527 5.527 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.085 4.085 20 C -0.117 4.117 21 C 0.376 3.624 22 O -0.406 6.406 23 O -0.316 6.316 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.246 0.754 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.173 0.827 36 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -16.358 10.403 -7.206 20.682 hybrid contribution 1.039 -0.208 -0.177 1.075 sum -15.319 10.195 -7.383 19.827 Atomic orbital electron populations 1.21042 0.90014 1.02819 1.03509 1.19932 0.96745 0.91215 0.96706 1.20742 0.93268 0.97330 1.01981 1.21159 0.94456 0.96849 1.00895 1.17740 0.83977 0.93467 1.00344 1.43973 1.03654 1.28505 1.57028 1.21911 0.91859 0.79659 0.76797 1.90700 1.70772 1.38166 1.38593 1.21923 0.86946 1.04372 1.03596 1.18923 0.95030 0.90662 0.95505 1.21148 0.91814 1.11059 1.32815 0.92587 1.25019 0.98472 0.95609 0.95204 1.69976 1.35668 1.14002 1.33057 0.86639 0.85571 0.77489 0.78151 1.20231 1.21263 1.20222 1.21600 0.92567 0.99189 0.95100 1.18741 0.92977 0.90004 1.09991 1.20857 0.85185 0.84427 0.71975 1.90823 1.15213 1.87843 1.46680 1.84654 1.45144 1.16952 1.84826 0.90731 0.92180 0.89284 0.84803 0.84994 0.75356 0.89646 0.89804 0.95700 0.95659 0.92814 0.82686 0.72838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 8.68 36.00 0.31 -0.89 16 2 C -0.04 -0.53 5.92 -104.19 -0.62 -1.14 16 3 C -0.11 -1.13 9.65 -39.67 -0.38 -1.52 16 4 C -0.11 -1.17 9.95 -39.31 -0.39 -1.56 16 5 C 0.14 1.89 6.31 -83.74 -0.53 1.36 16 6 N -0.69 -9.13 5.35 -9.89 -0.05 -9.19 16 7 C 0.51 9.16 7.57 -10.99 -0.08 9.08 16 8 O -0.51 -11.31 13.54 5.55 0.08 -11.24 16 9 C -0.13 -2.43 5.64 -27.88 -0.16 -2.59 16 10 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 11 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 16 12 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.06 -0.98 8.23 -38.97 -0.32 -1.30 16 20 C -0.12 -1.61 5.87 -105.00 -0.62 -2.22 16 21 C 0.53 7.28 8.20 34.62 0.28 7.57 16 22 O -0.51 -7.44 14.14 -19.24 -0.27 -7.71 16 23 O -0.50 -6.19 12.70 -40.53 -0.51 -6.70 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.46 8.03 -51.93 -0.42 0.05 16 26 H 0.09 1.02 5.92 -51.93 -0.31 0.71 16 27 H 0.13 0.93 8.05 -52.48 -0.42 0.50 16 28 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.41 3.87 8.81 -40.82 -0.36 3.51 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.16 2.75 5.83 -52.49 -0.31 2.44 16 36 H 0.41 2.94 9.11 45.56 0.42 3.36 16 LS Contribution 315.21 15.07 4.75 4.75 Total: -1.00 -35.16 315.21 -6.80 -41.96 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.47 Total: 3.83 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.03 Total: -5.76 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.68 Total: -35.40 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.71 Total: -25.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.16 -6.80 -41.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607799310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.027 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds