Wall clock time and date at job start Mon Mar 30 2020 20:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 119.99865 * 2 1 4 4 H 1.48502 * 109.47023 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47205 * 299.99876 * 3 2 1 6 6 H 1.48501 * 109.47509 * 60.00126 * 3 2 1 7 7 C 1.40029 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99946 * 192.15172 * 7 2 1 9 9 C 1.41544 * 119.99866 * 12.15488 * 7 2 1 10 10 C 1.41156 * 120.99900 * 201.17321 * 9 7 2 11 11 C 1.36593 * 119.13103 * 179.97438 * 10 9 7 12 12 N 1.32067 * 121.25812 * 359.74009 * 11 10 9 13 13 C 1.32492 * 122.22714 * 0.53626 * 12 11 10 14 14 N 1.39461 * 119.64841 * 179.74729 * 13 12 11 15 15 C 1.34776 * 120.00184 * 6.03381 * 14 13 12 16 16 O 1.21590 * 119.99876 * 355.41388 * 15 14 13 17 17 N 1.34769 * 120.00294 * 175.13932 * 15 14 13 18 18 C 1.47022 * 125.65053 * 359.96607 * 17 15 14 19 19 C 1.54334 * 107.27189 * 178.84802 * 18 17 15 20 20 C 1.55164 * 103.01677 * 338.14446 * 19 18 17 21 21 H 1.09004 * 111.03492 * 277.21648 * 20 19 18 22 22 O 1.42901 * 111.00285 * 153.37933 * 20 19 18 23 23 C 1.47436 * 125.65056 * 180.27340 * 17 15 14 24 24 C 1.38642 * 120.70582 * 359.46565 * 13 12 11 25 25 H 0.97000 * 119.99767 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.43786 * 0.02562 * 10 9 7 27 27 H 1.08002 * 119.37634 * 180.02562 * 11 10 9 28 28 H 0.96996 * 120.00218 * 186.03351 * 14 13 12 29 29 H 1.09001 * 109.88268 * 298.39698 * 18 17 15 30 30 H 1.09003 * 109.87886 * 59.55789 * 18 17 15 31 31 H 1.08998 * 110.85536 * 219.67532 * 19 18 17 32 32 H 1.09001 * 110.51485 * 96.44649 * 19 18 17 33 33 H 0.96703 * 113.99699 * 186.34893 * 22 20 19 34 34 H 1.08995 * 110.36356 * 322.93277 * 23 17 15 35 35 H 1.09000 * 110.36222 * 85.25591 * 23 17 15 36 36 H 1.07996 * 120.66407 * 180.27324 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2126 6 1 1.8828 2.3965 1.2125 7 6 2.0077 -1.2127 0.0005 8 1 3.0695 -1.2230 0.1974 9 6 1.3237 -2.4248 -0.2570 10 6 1.8589 -3.6637 0.1570 11 6 1.1664 -4.8101 -0.1111 12 7 0.0075 -4.7786 -0.7436 13 6 -0.5398 -3.6461 -1.1597 14 7 -1.7639 -3.6758 -1.8273 15 6 -2.4423 -4.8349 -1.9396 16 8 -1.9497 -5.8695 -1.5328 17 7 -3.6690 -4.8465 -2.4976 18 6 -4.3827 -3.6732 -3.0225 19 6 -5.7304 -4.1711 -3.5862 20 6 -5.4636 -5.6764 -3.8516 21 1 -4.9667 -5.8225 -4.8107 22 8 -6.6754 -6.4308 -3.7853 23 6 -4.5202 -6.0369 -2.6770 24 6 0.0886 -2.4311 -0.9335 25 1 -0.4850 0.8401 0.0004 26 1 2.8032 -3.7045 0.6795 27 1 1.5720 -5.7601 0.2042 28 1 -2.1270 -2.8623 -2.2109 29 1 -4.5564 -2.9556 -2.2207 30 1 -3.7990 -3.2095 -3.8178 31 1 -5.9780 -3.6540 -4.5133 32 1 -6.5231 -4.0441 -2.8490 33 1 -6.5471 -7.3872 -3.8480 34 1 -3.9109 -6.9039 -2.9321 35 1 -5.0972 -6.2304 -1.7727 36 1 -0.3603 -1.5079 -1.2691 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871721790.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:58 Heat of formation + Delta-G solvation = -28.955503 kcal Electronic energy + Delta-G solvation = -20997.459618 eV Core-core repulsion = 17675.045328 eV Total energy + Delta-G solvation = -3322.414290 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.17289 -38.69867 -37.53553 -35.56483 -34.32918 -33.74011 -30.89009 -30.41818 -29.02551 -27.90608 -26.01625 -23.77454 -21.90099 -21.51417 -21.08472 -19.48055 -18.03122 -17.81266 -17.59549 -16.05923 -15.58266 -15.35475 -14.88530 -14.71000 -14.16696 -14.12892 -13.87206 -13.38769 -13.22779 -12.83518 -12.79360 -12.59911 -12.22034 -12.06822 -11.68552 -11.45102 -11.16564 -10.94869 -10.89855 -10.36754 -10.27857 -10.09642 -9.79166 -9.60000 -9.40532 -8.48123 -7.98358 -7.73133 -6.99909 -6.76045 -4.63641 2.68622 2.76845 2.80583 3.00514 3.06007 3.24832 3.78757 3.83284 3.88339 4.23186 4.44693 4.48455 4.69334 4.78176 5.06359 5.19796 5.46735 5.57281 5.66013 5.71266 5.76142 5.88383 5.90627 6.29771 6.60150 6.65096 6.82449 6.94061 7.16868 7.27775 7.32140 7.45155 7.50100 7.87398 8.08567 8.34015 8.47285 8.73212 8.75761 9.14577 9.74647 10.05563 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026137 B = 0.004137 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.037326 B = 6766.299139 C = 7750.967110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.449 4.449 8 H 0.082 0.918 9 C 0.140 3.860 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.352 3.648 14 N -0.663 5.663 15 C 0.711 3.289 16 O -0.529 6.529 17 N -0.642 5.642 18 C 0.098 3.902 19 C -0.120 4.120 20 C 0.089 3.911 21 H 0.075 0.925 22 O -0.558 6.558 23 C 0.098 3.902 24 C -0.249 4.249 25 H 0.280 0.720 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.404 0.596 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.382 0.618 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.237 -2.729 -7.676 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.480 4.480 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.309 4.309 11 C -0.034 4.034 12 N -0.274 5.274 13 C 0.126 3.874 14 N -0.311 5.311 15 C 0.412 3.588 16 O -0.400 6.400 17 N -0.385 5.385 18 C -0.025 4.025 19 C -0.158 4.158 20 C 0.029 3.971 21 H 0.093 0.907 22 O -0.363 6.363 23 C -0.026 4.026 24 C -0.275 4.275 25 H 0.091 0.909 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.239 0.761 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.729 -3.582 -7.427 13.532 hybrid contribution 0.802 1.550 0.018 1.745 sum -9.927 -2.032 -7.409 12.552 Atomic orbital electron populations 1.69752 1.07642 1.29014 1.35261 1.25988 0.94849 1.01584 0.91964 0.86153 0.80893 0.80457 0.78611 1.18308 1.19659 1.19857 1.19653 0.96444 0.90187 1.41696 0.89981 1.17584 0.90445 0.92291 0.86542 1.21645 1.03626 0.94071 1.11538 1.21463 0.90270 0.96711 0.94980 1.67193 1.13335 1.27515 1.19380 1.18004 0.84960 0.90874 0.93519 1.42531 1.20568 1.09831 1.58174 1.15599 0.79105 0.84815 0.79253 1.91019 1.66900 1.30747 1.51324 1.47518 1.16202 1.08919 1.65843 1.22015 0.92465 0.89459 0.98605 1.22590 0.97099 0.93734 1.02396 1.22977 0.84921 0.92215 0.97012 0.90685 1.86502 1.30373 1.22615 1.96773 1.22669 0.92420 0.89172 0.98381 1.21771 1.00721 0.95529 1.09472 0.90862 0.88060 0.86054 0.76145 0.90986 0.91357 0.89466 0.89545 0.76987 0.90232 0.91152 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.29 10.50 55.55 0.58 -18.70 16 2 C 0.07 1.78 5.31 -17.34 -0.09 1.69 16 3 Si 0.91 17.79 29.58 -169.99 -5.03 12.76 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.52 9.15 -37.65 -0.34 -11.86 16 8 H 0.08 2.02 7.88 -52.49 -0.41 1.60 16 9 C 0.14 3.70 5.65 -106.55 -0.60 3.10 16 10 C -0.28 -7.08 9.85 -39.07 -0.38 -7.46 16 11 C 0.12 2.94 11.10 -18.04 -0.20 2.74 16 12 N -0.56 -14.65 7.86 -12.75 -0.10 -14.75 16 13 C 0.35 8.81 7.42 -154.68 -1.15 7.66 16 14 N -0.66 -13.75 5.34 -15.86 -0.08 -13.83 16 15 C 0.71 14.59 8.45 -86.93 -0.73 13.85 16 16 O -0.53 -13.10 14.86 5.29 0.08 -13.02 16 17 N -0.64 -9.73 3.33 -176.23 -0.59 -10.32 16 18 C 0.10 1.09 6.17 -3.06 -0.02 1.07 16 19 C -0.12 -1.09 6.68 -24.89 -0.17 -1.25 16 20 C 0.09 0.84 4.43 -24.58 -0.11 0.73 16 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 22 O -0.56 -4.97 13.47 -35.23 -0.47 -5.44 16 23 C 0.10 1.22 6.64 -2.53 -0.02 1.21 16 24 C -0.25 -6.40 8.67 -38.45 -0.33 -6.73 16 25 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 26 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 27 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 28 H 0.40 6.98 7.68 -40.82 -0.31 6.67 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.38 1.85 9.11 45.56 0.42 2.26 16 34 H 0.08 1.03 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.14 3.52 5.81 -52.49 -0.31 3.21 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -33.36 307.55 -8.68 -42.04 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.55 Total: 11.90 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: -4.15 Total: 4.74 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: -0.19 Total: -57.60 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.40 Total: -18.47 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.36 -8.68 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871721790.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.080 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds