Wall clock time and date at job start Mon Mar 30 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00415 * 2 1 4 4 H 1.48496 * 109.47285 * 274.99820 * 3 2 1 5 5 H 1.48504 * 109.46975 * 34.99458 * 3 2 1 6 6 H 1.48499 * 109.47195 * 154.99207 * 3 2 1 7 7 C 1.40035 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99980 * 144.14958 * 7 2 1 9 9 C 1.41545 * 119.99947 * 323.87329 * 7 2 1 10 10 C 1.41161 * 121.00074 * 345.41042 * 9 7 2 11 11 C 1.36593 * 119.13068 * 180.02562 * 10 9 7 12 12 N 1.32064 * 121.25778 * 359.97438 * 11 10 9 13 13 C 1.32491 * 122.22907 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.64842 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99775 * 355.23144 * 14 13 12 16 16 O 1.21583 * 120.00154 * 5.92750 * 15 14 13 17 17 N 1.34778 * 120.00181 * 185.93383 * 15 14 13 18 18 C 1.46500 * 120.00419 * 179.97438 * 17 15 14 19 19 H 1.09006 * 110.45513 * 327.60988 * 18 17 15 20 20 C 1.54502 * 110.51421 * 204.99981 * 18 17 15 21 21 C 1.54473 * 104.06418 * 241.35823 * 20 18 17 22 22 O 1.44430 * 104.80541 * 23.97589 * 21 20 18 23 23 C 1.44420 * 105.27268 * 319.48958 * 22 21 20 24 24 C 1.38639 * 120.70677 * 359.71793 * 13 12 11 25 25 H 0.97002 * 119.99431 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.43489 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.36960 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00204 * 175.22366 * 14 13 12 29 29 H 0.96997 * 119.99632 * 0.02562 * 17 15 14 30 30 H 1.09003 * 110.50936 * 0.02562 * 20 18 17 31 31 H 1.09003 * 110.51441 * 122.57363 * 20 18 17 32 32 H 1.08998 * 110.37590 * 142.81332 * 21 20 18 33 33 H 1.09004 * 110.37559 * 265.14625 * 21 20 18 34 34 H 1.08998 * 110.37882 * 281.67590 * 23 22 21 35 35 H 1.09000 * 110.37153 * 159.33830 * 23 22 21 36 36 H 1.08003 * 120.66892 * 180.30589 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3835 2.1073 -1.3947 5 1 1.4958 2.6198 0.8030 6 1 3.5879 1.4118 0.5919 7 6 2.0076 -1.2128 -0.0005 8 1 2.9341 -1.3012 -0.5484 9 6 1.5039 -2.3210 0.7217 10 6 0.4842 -2.1589 1.6843 11 6 0.0268 -3.2546 2.3595 12 7 0.5199 -4.4576 2.1275 13 6 1.4770 -4.6691 1.2361 14 7 1.9587 -5.9624 1.0347 15 6 1.5202 -6.9732 1.8108 16 8 0.6275 -6.7803 2.6133 17 7 2.0715 -8.1978 1.6975 18 6 1.5953 -9.2965 2.5415 19 1 1.2729 -8.9192 3.5120 20 6 2.6991 -10.3636 2.7150 21 6 2.0855 -11.6415 2.1013 22 8 1.0871 -11.1629 1.1738 23 6 0.4453 -10.0560 1.8436 24 6 2.0012 -3.6194 0.4976 25 1 -0.4849 0.8401 0.0004 26 1 0.0718 -1.1811 1.8850 27 1 -0.7534 -3.1351 3.0965 28 1 2.6091 -6.1343 0.3360 29 1 2.7840 -8.3516 1.0576 30 1 3.5993 -10.0735 2.1731 31 1 2.9225 -10.5139 3.7712 32 1 2.8491 -12.2141 1.5748 33 1 1.6216 -12.2503 2.8774 34 1 -0.2702 -10.4214 2.5802 35 1 -0.0510 -9.4104 1.1190 36 1 2.7780 -3.7932 -0.2323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871726594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:02 Heat of formation + Delta-G solvation = -31.715532 kcal Electronic energy + Delta-G solvation = -20684.936387 eV Core-core repulsion = 17362.402414 eV Total energy + Delta-G solvation = -3322.533974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23869 -39.13452 -37.81635 -34.69994 -34.12564 -33.59838 -31.01066 -30.72110 -29.01547 -27.88154 -26.00514 -23.36231 -22.27430 -21.68786 -20.98720 -20.12327 -18.05628 -17.92593 -16.77395 -16.30886 -15.87799 -15.48030 -15.05717 -14.76418 -14.53312 -14.25912 -14.09226 -13.44030 -13.16830 -12.97873 -12.58167 -12.37165 -12.07445 -11.81091 -11.68816 -11.50456 -11.30197 -11.23987 -10.91598 -10.46792 -10.13553 -10.10411 -9.73205 -9.57811 -9.16674 -8.84029 -8.13791 -7.65084 -7.08953 -6.97432 -4.57983 2.73816 2.75600 2.93481 2.99289 3.03416 3.28143 3.73246 3.79752 3.87424 4.33513 4.48040 4.55060 4.67244 4.80587 4.95884 5.19515 5.41024 5.42592 5.59363 5.69730 5.72360 5.80428 5.98239 6.50991 6.56012 6.61626 6.71247 6.80495 6.85876 7.05929 7.27057 7.44791 7.52815 7.82798 8.08112 8.31165 8.46553 8.70443 8.75177 9.12575 9.79065 9.86783 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.052275 B = 0.003207 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.504437 B = 8729.864317 C = 8956.111160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.093 3.907 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.461 4.461 8 H 0.085 0.915 9 C 0.147 3.853 10 C -0.248 4.248 11 C 0.113 3.887 12 N -0.563 5.563 13 C 0.373 3.627 14 N -0.669 5.669 15 C 0.691 3.309 16 O -0.530 6.530 17 N -0.745 5.745 18 C 0.135 3.865 19 H 0.105 0.895 20 C -0.162 4.162 21 C 0.044 3.956 22 O -0.376 6.376 23 C 0.032 3.968 24 C -0.320 4.320 25 H 0.287 0.713 26 H 0.114 0.886 27 H 0.120 0.880 28 H 0.402 0.598 29 H 0.393 0.607 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -13.874 2.144 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.132 4.132 3 Si 0.722 3.278 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.490 4.490 8 H 0.103 0.897 9 C 0.139 3.861 10 C -0.272 4.272 11 C -0.037 4.037 12 N -0.283 5.283 13 C 0.145 3.855 14 N -0.317 5.317 15 C 0.390 3.610 16 O -0.400 6.400 17 N -0.403 5.403 18 C 0.028 3.972 19 H 0.123 0.877 20 C -0.201 4.201 21 C -0.033 4.033 22 O -0.295 6.295 23 C -0.046 4.046 24 C -0.346 4.346 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.138 0.862 28 H 0.237 0.763 29 H 0.226 0.774 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.203 -14.396 3.199 15.334 hybrid contribution 1.381 1.457 -1.023 2.253 sum 5.584 -12.939 2.177 14.260 Atomic orbital electron populations 1.69929 1.08420 1.30375 1.28619 1.26029 0.94277 1.01881 0.91053 0.86462 0.81611 0.80436 0.79330 1.19301 1.19697 1.17925 1.19506 1.07539 0.94270 1.27649 0.89709 1.17449 0.88663 0.90745 0.89224 1.21715 1.04399 0.99049 1.02025 1.21518 0.97120 0.87769 0.97250 1.67219 1.14775 1.24513 1.21773 1.17762 0.92453 0.81834 0.93463 1.42578 1.46274 1.06202 1.36661 1.16123 0.82615 0.79953 0.82303 1.91024 1.29870 1.81452 1.37693 1.45284 1.42382 1.08525 1.44112 1.22060 0.93373 0.86359 0.95358 0.87668 1.23267 0.99026 0.94998 1.02782 1.23416 0.91299 0.95683 0.92935 1.89156 1.51597 1.48927 1.39772 1.23984 0.95189 0.87911 0.97502 1.20975 1.11564 0.92328 1.09736 0.90229 0.86765 0.86217 0.76343 0.77370 0.89887 0.89385 0.89029 0.92089 0.91350 0.88420 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.55 11.63 55.55 0.65 -17.91 16 2 C 0.09 2.22 4.81 -17.34 -0.08 2.14 16 3 Si 0.90 17.53 29.67 -169.99 -5.04 12.48 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.46 -11.80 9.01 -37.65 -0.34 -12.14 16 8 H 0.08 2.07 8.04 -52.48 -0.42 1.65 16 9 C 0.15 3.89 5.66 -106.55 -0.60 3.29 16 10 C -0.25 -6.51 8.90 -39.07 -0.35 -6.86 16 11 C 0.11 2.89 11.10 -18.05 -0.20 2.69 16 12 N -0.56 -14.73 7.86 -12.76 -0.10 -14.83 16 13 C 0.37 8.95 7.42 -154.67 -1.15 7.81 16 14 N -0.67 -12.67 5.40 -15.86 -0.09 -12.75 16 15 C 0.69 12.91 8.52 -86.92 -0.74 12.17 16 16 O -0.53 -12.30 14.25 5.29 0.08 -12.23 16 17 N -0.74 -9.82 5.09 -57.14 -0.29 -10.11 16 18 C 0.14 1.57 3.48 -66.36 -0.23 1.34 16 19 H 0.11 1.38 7.55 -51.93 -0.39 0.99 16 20 C -0.16 -1.30 6.85 -25.17 -0.17 -1.47 16 21 C 0.04 0.35 7.63 37.93 0.29 0.64 16 22 O -0.38 -4.42 11.65 -35.23 -0.41 -4.83 16 23 C 0.03 0.38 7.35 37.94 0.28 0.66 16 24 C -0.32 -7.79 9.74 -38.45 -0.37 -8.16 16 25 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 26 H 0.11 2.99 6.31 -52.49 -0.33 2.66 16 27 H 0.12 2.74 8.06 -52.49 -0.42 2.32 16 28 H 0.40 5.91 8.72 -40.82 -0.36 5.56 16 29 H 0.39 4.04 8.40 -40.82 -0.34 3.69 16 30 H 0.08 0.60 7.70 -51.93 -0.40 0.20 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.35 8.06 -51.93 -0.42 0.93 16 36 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -32.61 309.10 -8.56 -41.17 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -4.33 Total: 12.25 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -3.67 Total: 2.10 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.17 Total: -55.60 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.34 Total: -17.06 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.04 Total: 12.48 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.61 -8.56 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.453 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds