Wall clock time and date at job start Mon Mar 30 2020 20:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00415 * 2 1 4 4 H 1.48496 * 109.47285 * 274.99820 * 3 2 1 5 5 H 1.48504 * 109.46975 * 34.99458 * 3 2 1 6 6 H 1.48499 * 109.47195 * 154.99207 * 3 2 1 7 7 C 1.40035 * 119.99592 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99980 * 144.14958 * 7 2 1 9 9 C 1.41545 * 119.99947 * 323.87329 * 7 2 1 10 10 C 1.41161 * 121.00074 * 345.41042 * 9 7 2 11 11 C 1.36593 * 119.13068 * 180.02562 * 10 9 7 12 12 N 1.32064 * 121.25778 * 359.97438 * 11 10 9 13 13 C 1.32491 * 122.22907 * 0.02562 * 12 11 10 14 14 N 1.39466 * 119.64842 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99775 * 355.23144 * 14 13 12 16 16 O 1.21583 * 120.00154 * 5.92750 * 15 14 13 17 17 N 1.34778 * 120.00181 * 185.93383 * 15 14 13 18 18 C 1.46500 * 120.00419 * 179.97438 * 17 15 14 19 19 H 1.09006 * 110.45513 * 327.60988 * 18 17 15 20 20 C 1.54502 * 110.51421 * 204.99981 * 18 17 15 21 21 C 1.54473 * 104.06418 * 241.35823 * 20 18 17 22 22 O 1.44430 * 104.80541 * 23.97589 * 21 20 18 23 23 C 1.44420 * 105.27268 * 319.48958 * 22 21 20 24 24 C 1.38639 * 120.70677 * 359.71793 * 13 12 11 25 25 H 0.97002 * 119.99431 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.43489 * 359.97438 * 10 9 7 27 27 H 1.07994 * 119.36960 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00204 * 175.22366 * 14 13 12 29 29 H 0.96997 * 119.99632 * 0.02562 * 17 15 14 30 30 H 1.09003 * 110.50936 * 0.02562 * 20 18 17 31 31 H 1.09003 * 110.51441 * 122.57363 * 20 18 17 32 32 H 1.08998 * 110.37590 * 142.81332 * 21 20 18 33 33 H 1.09004 * 110.37559 * 265.14625 * 21 20 18 34 34 H 1.08998 * 110.37882 * 281.67590 * 23 22 21 35 35 H 1.09000 * 110.37153 * 159.33830 * 23 22 21 36 36 H 1.08003 * 120.66892 * 180.30589 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6176 0.0000 4 1 2.3835 2.1073 -1.3947 5 1 1.4958 2.6198 0.8030 6 1 3.5879 1.4118 0.5919 7 6 2.0076 -1.2128 -0.0005 8 1 2.9341 -1.3012 -0.5484 9 6 1.5039 -2.3210 0.7217 10 6 0.4842 -2.1589 1.6843 11 6 0.0268 -3.2546 2.3595 12 7 0.5199 -4.4576 2.1275 13 6 1.4770 -4.6691 1.2361 14 7 1.9587 -5.9624 1.0347 15 6 1.5202 -6.9732 1.8108 16 8 0.6275 -6.7803 2.6133 17 7 2.0715 -8.1978 1.6975 18 6 1.5953 -9.2965 2.5415 19 1 1.2729 -8.9192 3.5120 20 6 2.6991 -10.3636 2.7150 21 6 2.0855 -11.6415 2.1013 22 8 1.0871 -11.1629 1.1738 23 6 0.4453 -10.0560 1.8436 24 6 2.0012 -3.6194 0.4976 25 1 -0.4849 0.8401 0.0004 26 1 0.0718 -1.1811 1.8850 27 1 -0.7534 -3.1351 3.0965 28 1 2.6091 -6.1343 0.3360 29 1 2.7840 -8.3516 1.0576 30 1 3.5993 -10.0735 2.1731 31 1 2.9225 -10.5139 3.7712 32 1 2.8491 -12.2141 1.5748 33 1 1.6216 -12.2503 2.8774 34 1 -0.2702 -10.4214 2.5802 35 1 -0.0510 -9.4104 1.1190 36 1 2.7780 -3.7932 -0.2323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871726594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:02 Heat of formation + Delta-G solvation = -54.858281 kcal Electronic energy + Delta-G solvation = -20685.939932 eV Core-core repulsion = 17362.402414 eV Total energy + Delta-G solvation = -3323.537519 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57398 -40.41543 -39.42676 -36.36524 -35.46210 -35.32969 -32.65520 -31.96296 -30.36898 -29.19462 -27.92056 -24.50998 -23.62586 -23.44639 -22.12478 -21.61385 -19.74866 -19.43901 -17.99155 -17.43772 -17.18197 -16.80790 -16.33521 -16.21776 -16.16773 -15.99942 -15.54300 -14.83758 -14.72924 -14.40082 -14.26105 -13.79273 -13.26873 -13.09465 -12.93807 -12.75395 -12.63827 -12.52214 -12.05577 -11.99865 -11.91741 -11.48201 -11.23803 -11.00944 -10.94554 -10.09986 -10.01053 -9.56031 -8.91621 -8.80564 -6.52807 0.86252 1.00140 1.39123 1.51536 1.58497 1.64020 2.16133 2.24565 2.70232 3.03125 3.16260 3.55128 3.77128 3.85397 4.12769 4.14152 4.19978 4.34279 4.59733 4.73167 4.75627 4.86370 4.87082 4.94298 4.96520 5.01106 5.02768 5.18793 5.49072 5.52870 5.61924 5.78815 5.89182 5.92747 6.24752 6.52974 6.77545 6.81001 6.99723 7.61628 7.93830 8.08768 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.052275 B = 0.003207 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.504437 B = 8729.864317 C = 8956.111160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.054 3.946 3 Si 0.979 3.021 4 H -0.255 1.255 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.485 4.485 8 H 0.090 0.910 9 C 0.118 3.882 10 C -0.268 4.268 11 C 0.106 3.894 12 N -0.590 5.590 13 C 0.372 3.628 14 N -0.659 5.659 15 C 0.689 3.311 16 O -0.578 6.578 17 N -0.721 5.721 18 C 0.127 3.873 19 H 0.089 0.911 20 C -0.150 4.150 21 C 0.040 3.960 22 O -0.395 6.395 23 C 0.036 3.964 24 C -0.331 4.331 25 H 0.299 0.701 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.422 0.578 29 H 0.410 0.590 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 -14.443 1.816 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.169 4.169 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.514 4.514 8 H 0.108 0.892 9 C 0.111 3.889 10 C -0.292 4.292 11 C -0.044 4.044 12 N -0.310 5.310 13 C 0.142 3.858 14 N -0.309 5.309 15 C 0.388 3.612 16 O -0.452 6.452 17 N -0.379 5.379 18 C 0.021 3.979 19 H 0.107 0.893 20 C -0.188 4.188 21 C -0.036 4.036 22 O -0.314 6.314 23 C -0.043 4.043 24 C -0.358 4.358 25 H 0.110 0.890 26 H 0.124 0.876 27 H 0.153 0.847 28 H 0.260 0.740 29 H 0.247 0.753 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.077 -15.044 2.830 16.470 hybrid contribution 0.795 1.532 -0.956 1.973 sum 6.872 -13.512 1.874 15.274 Atomic orbital electron populations 1.69925 1.09984 1.32168 1.28217 1.26951 0.94953 1.05117 0.89925 0.85261 0.79693 0.75382 0.79890 1.17962 1.18807 1.18010 1.19836 1.07994 0.95327 1.28210 0.89178 1.17850 0.89201 0.92054 0.89833 1.21691 1.05484 0.98883 1.03138 1.21795 0.97397 0.87734 0.97439 1.67325 1.16035 1.24627 1.23063 1.18011 0.91618 0.83683 0.92455 1.42412 1.46398 1.04774 1.37311 1.16303 0.82214 0.81056 0.81598 1.90992 1.32107 1.82508 1.39635 1.45090 1.41819 1.06921 1.44116 1.22253 0.95079 0.86414 0.94106 0.89294 1.23253 0.97942 0.93235 1.04355 1.23674 0.91071 0.95828 0.93061 1.89138 1.52580 1.48679 1.41015 1.23844 0.95447 0.88001 0.96967 1.21162 1.12260 0.91903 1.10448 0.88999 0.87558 0.84719 0.73992 0.75276 0.88517 0.87431 0.86939 0.90655 0.90381 0.90947 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.66 11.63 21.84 0.25 -38.41 16 2 C 0.05 2.55 4.81 85.29 0.41 2.96 16 3 Si 0.98 35.19 29.67 68.60 2.04 37.23 16 4 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.49 -24.98 9.01 23.52 0.21 -24.77 16 8 H 0.09 4.39 8.04 -2.91 -0.02 4.37 16 9 C 0.12 6.38 5.66 -21.11 -0.12 6.26 16 10 C -0.27 -14.47 8.90 22.60 0.20 -14.27 16 11 C 0.11 5.57 11.10 84.27 0.94 6.51 16 12 N -0.59 -31.55 7.86 -194.27 -1.53 -33.08 16 13 C 0.37 18.00 7.42 132.76 0.99 18.98 16 14 N -0.66 -24.67 5.40 -322.37 -1.74 -26.41 16 15 C 0.69 25.60 8.52 179.06 1.53 27.13 16 16 O -0.58 -27.35 14.25 -3.98 -0.06 -27.40 16 17 N -0.72 -18.11 5.09 -452.96 -2.31 -20.41 16 18 C 0.13 2.81 3.48 46.01 0.16 2.97 16 19 H 0.09 2.31 7.55 -2.38 -0.02 2.29 16 20 C -0.15 -1.95 6.85 31.61 0.22 -1.73 16 21 C 0.04 0.52 7.63 72.48 0.55 1.08 16 22 O -0.39 -8.62 11.65 -148.98 -1.74 -10.35 16 23 C 0.04 0.83 7.35 72.49 0.53 1.36 16 24 C -0.33 -16.29 9.74 23.00 0.22 -16.06 16 25 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 26 H 0.11 5.76 6.31 -2.91 -0.02 5.74 16 27 H 0.14 6.38 8.06 -2.91 -0.02 6.35 16 28 H 0.42 11.85 8.72 -92.71 -0.81 11.04 16 29 H 0.41 7.49 8.40 -92.71 -0.78 6.71 16 30 H 0.10 1.03 7.70 -2.39 -0.02 1.01 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 0.79 8.14 -2.38 -0.02 0.78 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 36 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -72.11 309.10 0.31 -71.80 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.46 Total: 36.61 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.84 Total: 10.42 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -5.32 Total: -118.31 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -1.79 Total: -37.75 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 2.04 Total: 37.23 kcal Total: -72.11 0.31 -71.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.944 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds