Wall clock time and date at job start Mon Mar 30 2020 20:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48506 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46895 * 299.99561 * 3 2 1 6 6 H 1.48496 * 109.47377 * 60.00092 * 3 2 1 7 7 C 1.40038 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99795 * 170.15113 * 7 2 1 9 9 C 1.41543 * 119.99834 * 350.15337 * 7 2 1 10 10 C 1.41160 * 120.99528 * 151.70085 * 9 7 2 11 11 C 1.36586 * 119.12759 * 180.02562 * 10 9 7 12 12 N 1.32067 * 121.26045 * 359.72676 * 11 10 9 13 13 C 1.32488 * 122.22660 * 0.57004 * 12 11 10 14 14 N 1.39462 * 119.65137 * 179.70532 * 13 12 11 15 15 C 1.34775 * 119.99845 * 5.08933 * 14 13 12 16 16 O 1.21584 * 120.00202 * 354.97920 * 15 14 13 17 17 N 1.34774 * 120.00150 * 174.97742 * 15 14 13 18 18 O 1.41609 * 119.99793 * 180.02562 * 17 15 14 19 19 C 1.42907 * 113.99511 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.46869 * 179.97438 * 19 18 17 21 21 C 1.52994 * 117.49838 * 243.62412 * 20 19 18 22 22 C 1.52996 * 60.00052 * 252.50638 * 21 20 19 23 23 C 1.38647 * 120.70383 * 359.43290 * 13 12 11 24 24 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.43691 * 0.02562 * 10 9 7 26 26 H 1.08000 * 119.37124 * 180.02562 * 11 10 9 27 27 H 0.96998 * 120.00329 * 185.08867 * 14 13 12 28 28 H 0.96993 * 119.99958 * 0.02562 * 17 15 14 29 29 H 1.09000 * 109.47076 * 59.99942 * 19 18 17 30 30 H 1.09000 * 109.47185 * 299.99859 * 19 18 17 31 31 H 1.09001 * 115.54971 * 29.32529 * 20 19 18 32 32 H 1.09002 * 117.49978 * 359.97438 * 21 20 19 33 33 H 1.09005 * 117.50304 * 145.02206 * 21 20 19 34 34 H 1.08990 * 117.50347 * 252.50689 * 22 21 20 35 35 H 1.09005 * 117.49798 * 107.48775 * 22 21 20 36 36 H 1.08006 * 120.66313 * 180.29913 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8827 2.3964 -1.2126 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0757 -1.2197 -0.1594 9 6 1.3155 -2.4294 0.2107 10 6 1.7909 -3.6403 -0.3374 11 6 1.0925 -4.7921 -0.1110 12 7 -0.0119 -4.7928 0.6131 13 6 -0.5074 -3.6861 1.1470 14 7 -1.6812 -3.7477 1.8976 15 6 -2.2494 -4.9407 2.1630 16 8 -1.7914 -5.9547 1.6730 17 7 -3.3254 -5.0096 2.9718 18 8 -3.9220 -6.2631 3.2510 19 6 -5.0531 -6.1874 4.1212 20 6 -5.6141 -7.5921 4.3516 21 6 -7.0322 -7.8769 3.8531 22 6 -6.7618 -7.7390 5.3526 23 6 0.1316 -2.4681 0.9723 24 1 -0.4850 0.8401 0.0004 25 1 2.6950 -3.6558 -0.9280 26 1 1.4530 -5.7208 -0.5281 27 1 -2.0887 -2.9321 2.2286 28 1 -3.6910 -4.2006 3.3624 29 1 -5.8200 -5.5603 3.6664 30 1 -4.7495 -5.7560 5.0750 31 1 -4.8882 -8.4033 4.2955 32 1 -7.5658 -7.0634 3.3614 33 1 -7.2397 -8.8757 3.4689 34 1 -6.7911 -8.6469 5.9550 35 1 -7.1171 -6.8349 5.8471 36 1 -0.2703 -1.5671 1.4118 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732612.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:07 Heat of formation + Delta-G solvation = 48.931530 kcal Electronic energy + Delta-G solvation = -20236.682592 eV Core-core repulsion = 16917.645737 eV Total energy + Delta-G solvation = -3319.036855 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.70637 -38.49601 -37.79237 -36.32696 -34.25188 -33.74355 -31.78898 -30.47760 -28.44263 -26.89984 -25.97950 -22.74201 -22.22839 -21.84938 -21.15809 -20.08586 -18.48980 -17.87069 -17.43485 -16.14479 -15.66276 -15.57336 -15.15254 -14.63724 -14.35504 -14.21402 -14.16141 -13.71892 -13.07956 -12.87988 -12.61015 -12.48284 -11.93603 -11.73097 -11.52657 -11.38094 -11.20421 -10.91724 -10.83268 -10.29782 -10.25813 -10.11974 -9.77806 -9.58682 -9.39815 -8.66096 -7.94833 -7.72821 -7.05136 -6.76014 -4.62200 1.76391 2.69044 2.79525 3.02354 3.07801 3.23661 3.39304 3.84863 3.87084 4.01948 4.44147 4.46733 4.52797 4.71369 4.86463 4.92898 5.17372 5.23884 5.28303 5.53600 5.67483 5.74460 5.85829 5.89383 6.48857 6.57208 6.78018 6.91721 6.98884 7.11825 7.21879 7.39973 7.47512 7.86815 8.10048 8.31086 8.45992 8.72170 8.76559 9.16967 9.70944 10.10929 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032876 B = 0.003162 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.489230 B = 8854.048572 C = 9563.298488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.145 3.855 10 C -0.279 4.279 11 C 0.120 3.880 12 N -0.552 5.552 13 C 0.356 3.644 14 N -0.658 5.658 15 C 0.706 3.294 16 O -0.512 6.512 17 N -0.622 5.622 18 O -0.125 6.125 19 C 0.063 3.937 20 C -0.150 4.150 21 C -0.175 4.175 22 C -0.169 4.169 23 C -0.238 4.238 24 H 0.280 0.720 25 H 0.103 0.897 26 H 0.124 0.876 27 H 0.406 0.594 28 H 0.398 0.602 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 -3.836 9.232 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.303 4.303 11 C -0.034 4.034 12 N -0.270 5.270 13 C 0.130 3.870 14 N -0.310 5.310 15 C 0.406 3.594 16 O -0.380 6.380 17 N -0.330 5.330 18 O -0.128 6.128 19 C -0.014 4.014 20 C -0.170 4.170 21 C -0.212 4.212 22 C -0.206 4.206 23 C -0.264 4.264 24 H 0.091 0.909 25 H 0.121 0.879 26 H 0.141 0.859 27 H 0.240 0.760 28 H 0.236 0.764 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.787 -5.699 8.857 15.807 hybrid contribution 0.020 2.499 0.367 2.526 sum -11.767 -3.200 9.224 15.290 Atomic orbital electron populations 1.69755 1.07545 1.29070 1.35905 1.25936 0.94872 1.01388 0.92037 0.86168 0.80865 0.80598 0.78541 1.18362 1.19919 1.19749 1.19597 0.95873 0.89939 1.43296 0.89966 1.17579 0.90115 0.92318 0.86362 1.21721 1.04574 0.94671 1.09366 1.21493 0.90659 0.96641 0.94571 1.67183 1.15420 1.28250 1.16194 1.17897 0.85604 0.90982 0.92477 1.42307 1.26142 1.06725 1.55824 1.15529 0.79065 0.85086 0.79690 1.91037 1.61895 1.32976 1.52108 1.46323 1.32299 0.99577 1.54780 1.90580 1.45137 1.08284 1.68799 1.22465 0.88323 0.96663 0.93981 1.21970 0.92176 0.97288 1.05520 1.23113 0.97906 1.03550 0.96601 1.22998 1.01282 1.03669 0.92672 1.21531 1.01483 0.95153 1.08208 0.90906 0.87872 0.85868 0.75972 0.76372 0.92098 0.91776 0.86323 0.88465 0.88302 0.88136 0.88523 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.40 10.83 55.55 0.60 -18.80 16 2 C 0.08 1.80 5.30 -17.34 -0.09 1.71 16 3 Si 0.91 17.81 29.57 -169.99 -5.03 12.78 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.61 9.13 -37.65 -0.34 -11.95 16 8 H 0.08 2.01 7.87 -52.48 -0.41 1.60 16 9 C 0.14 3.79 5.58 -106.55 -0.59 3.19 16 10 C -0.28 -6.87 9.85 -39.07 -0.38 -7.25 16 11 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 12 N -0.55 -14.48 7.86 -12.76 -0.10 -14.58 16 13 C 0.36 8.73 7.42 -154.68 -1.15 7.58 16 14 N -0.66 -13.12 5.40 -15.86 -0.09 -13.21 16 15 C 0.71 14.59 8.67 -86.92 -0.75 13.83 16 16 O -0.51 -13.22 15.01 -12.86 -0.19 -13.41 16 17 N -0.62 -9.61 6.39 27.63 0.18 -9.44 16 18 O -0.12 -1.96 11.11 -29.63 -0.33 -2.29 16 19 C 0.06 0.65 6.51 37.16 0.24 0.89 16 20 C -0.15 -1.40 6.06 -90.62 -0.55 -1.95 16 21 C -0.17 -1.36 10.18 -26.74 -0.27 -1.63 16 22 C -0.17 -1.15 10.25 -26.74 -0.27 -1.43 16 23 C -0.24 -5.98 8.60 -38.46 -0.33 -6.31 16 24 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.12 2.64 8.06 -52.49 -0.42 2.21 16 27 H 0.41 6.35 8.71 -40.82 -0.36 5.99 16 28 H 0.40 4.32 8.56 -40.82 -0.35 3.97 16 29 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.13 3.20 6.28 -52.48 -0.33 2.88 16 LS Contribution 318.56 15.07 4.80 4.80 Total: -1.00 -33.51 318.56 -9.22 -42.74 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -4.37 Total: 11.98 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -4.70 Total: -0.58 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.59 Total: -56.02 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.52 Total: -15.70 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.51 -9.22 -42.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732612.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.667 kcal (2) G-P(sol) polarization free energy of solvation -33.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds