Wall clock time and date at job start Mon Mar 30 2020 20:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86804 * 120.00237 * 2 1 4 4 H 1.48500 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47027 * 300.00578 * 3 2 1 6 6 H 1.48500 * 109.46870 * 60.00061 * 3 2 1 7 7 C 1.40037 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99694 * 189.79698 * 7 2 1 9 9 C 1.41545 * 120.00153 * 9.78759 * 7 2 1 10 10 C 1.41168 * 120.99360 * 26.35084 * 9 7 2 11 11 C 1.36595 * 119.12486 * 180.27982 * 10 9 7 12 12 N 1.32073 * 121.25470 * 359.74567 * 11 10 9 13 13 C 1.32487 * 122.23211 * 359.97438 * 12 11 10 14 14 N 1.39464 * 119.64378 * 180.02562 * 13 12 11 15 15 C 1.34771 * 120.00489 * 354.62486 * 14 13 12 16 16 O 1.21587 * 119.99890 * 354.94914 * 15 14 13 17 17 N 1.34776 * 120.00303 * 174.94919 * 15 14 13 18 18 O 1.41601 * 120.00125 * 180.02562 * 17 15 14 19 19 C 1.42894 * 113.99856 * 179.97438 * 18 17 15 20 20 C 1.53784 * 113.61633 * 254.13732 * 19 18 17 21 21 C 1.53950 * 87.02157 * 220.05133 * 20 19 18 22 22 C 1.53781 * 113.61133 * 156.53133 * 19 18 17 23 23 C 1.38645 * 120.70648 * 359.97438 * 13 12 11 24 24 H 0.96995 * 119.99625 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.43722 * 0.04561 * 10 9 7 26 26 H 1.07995 * 119.37413 * 179.76347 * 11 10 9 27 27 H 0.97001 * 119.99505 * 174.63283 * 14 13 12 28 28 H 0.97001 * 119.99668 * 359.97438 * 17 15 14 29 29 H 1.08997 * 112.85521 * 25.33460 * 19 18 17 30 30 H 1.09010 * 113.61315 * 334.56904 * 20 19 18 31 31 H 1.08994 * 113.61813 * 105.46850 * 20 19 18 32 32 H 1.09005 * 113.53675 * 270.81049 * 21 20 19 33 33 H 1.09002 * 113.67055 * 139.92912 * 21 20 19 34 34 H 1.09007 * 113.61299 * 254.52603 * 22 19 18 35 35 H 1.08995 * 113.61677 * 25.35034 * 22 19 18 36 36 H 1.07995 * 120.66434 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3463 0.0006 5 1 1.8827 2.3964 -1.2124 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2128 -0.0005 8 1 3.0758 -1.2196 0.1586 9 6 1.3154 -2.4296 -0.2095 10 6 0.1066 -2.4624 -0.9380 11 6 -0.5326 -3.6570 -1.1117 12 7 -0.0385 -4.7771 -0.6161 13 6 1.0941 -4.8068 0.0706 14 7 1.5668 -6.0204 0.5693 15 6 0.8207 -7.1360 0.4463 16 8 -0.3019 -7.0687 -0.0158 17 7 1.3189 -8.3262 0.8357 18 8 0.5351 -9.4984 0.7060 19 6 1.1880 -10.6869 1.1568 20 6 1.6583 -11.6026 0.0142 21 6 1.1934 -12.7875 0.8803 22 6 0.2163 -11.8102 1.5551 23 6 1.8149 -3.6445 0.2979 24 1 -0.4849 0.8400 0.0004 25 1 -0.3091 -1.5545 -1.3493 26 1 -1.4596 -3.6862 -1.6651 27 1 2.4326 -6.0615 1.0047 28 1 2.2146 -8.3800 1.2041 29 1 1.9575 -10.4901 1.9033 30 1 1.0853 -11.4827 -0.9054 31 1 2.7353 -11.5772 -0.1506 32 1 1.9651 -13.1659 1.5506 33 1 0.6996 -13.5767 0.3133 34 1 0.1311 -11.9523 2.6325 35 1 -0.7519 -11.7464 1.0587 36 1 2.7383 -3.6695 0.8574 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871732763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:08 Heat of formation + Delta-G solvation = 44.634423 kcal Electronic energy + Delta-G solvation = -20337.980718 eV Core-core repulsion = 17018.757526 eV Total energy + Delta-G solvation = -3319.223191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81510 -39.20978 -37.87641 -35.82906 -34.37401 -33.59339 -31.39606 -30.63973 -28.19053 -25.99986 -25.97780 -24.99422 -22.29196 -21.72095 -20.54140 -19.82285 -18.48835 -18.01794 -17.47931 -15.87037 -15.68461 -15.27285 -15.16327 -14.94811 -14.31014 -14.08489 -13.94065 -13.55572 -13.01552 -12.76665 -12.58237 -12.46354 -12.32981 -11.81502 -11.51624 -11.39847 -11.22933 -10.97206 -10.84989 -10.53158 -10.35095 -10.00559 -9.75781 -9.54581 -9.40735 -8.64614 -7.99476 -7.71664 -7.02939 -6.74452 -4.61868 1.81641 2.72903 2.78473 3.03184 3.08072 3.24116 3.84160 3.87710 4.04608 4.21717 4.27014 4.44752 4.50773 4.59047 4.72203 5.10692 5.35593 5.45251 5.54798 5.61600 5.71419 5.74910 5.91129 5.99966 6.45064 6.57941 6.76816 6.92807 6.97031 7.14352 7.22589 7.44397 7.54782 7.90996 8.09141 8.27496 8.49422 8.75265 8.76436 9.14359 9.73931 10.11297 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.057239 B = 0.002941 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.055561 B = 9518.859303 C = 9821.526176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.222 4.222 11 C 0.106 3.894 12 N -0.553 5.553 13 C 0.368 3.632 14 N -0.661 5.661 15 C 0.706 3.294 16 O -0.511 6.511 17 N -0.623 5.623 18 O -0.115 6.115 19 C 0.032 3.968 20 C -0.159 4.159 21 C -0.140 4.140 22 C -0.127 4.127 23 C -0.303 4.303 24 H 0.282 0.718 25 H 0.132 0.868 26 H 0.123 0.877 27 H 0.403 0.597 28 H 0.397 0.603 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.271 -15.572 3.561 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.138 3.862 10 C -0.245 4.245 11 C -0.045 4.045 12 N -0.272 5.272 13 C 0.140 3.860 14 N -0.313 5.313 15 C 0.405 3.595 16 O -0.379 6.379 17 N -0.331 5.331 18 O -0.117 6.117 19 C -0.027 4.027 20 C -0.197 4.197 21 C -0.178 4.178 22 C -0.166 4.166 23 C -0.329 4.329 24 H 0.093 0.907 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.237 0.763 28 H 0.236 0.764 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.283 -16.218 2.882 17.020 hybrid contribution 1.880 1.255 0.775 2.390 sum 6.163 -14.964 3.657 16.591 Atomic orbital electron populations 1.69763 1.07579 1.29282 1.34972 1.25975 0.94874 1.01513 0.92059 0.86142 0.80717 0.80526 0.78632 1.18384 1.19640 1.19884 1.19592 0.95780 0.89950 1.43213 0.90093 1.17599 0.90878 0.91414 0.86326 1.22091 0.99625 0.98296 1.04528 1.21634 0.97949 0.87940 0.96959 1.67156 1.13033 1.30220 1.16805 1.17683 0.92102 0.82180 0.94083 1.42337 1.21761 1.05479 1.61745 1.15545 0.85193 0.78568 0.80166 1.91045 1.16914 1.83446 1.46516 1.46422 1.15475 0.98816 1.72402 1.90626 1.29316 1.06666 1.85090 1.24317 0.97434 0.83828 0.97134 1.23589 1.01785 0.95466 0.98833 1.22693 0.99225 0.96608 0.99265 1.23166 0.98996 0.92861 1.01557 1.21149 1.05036 0.92161 1.14574 0.90695 0.85034 0.85921 0.76256 0.76445 0.88196 0.88849 0.91017 0.89834 0.90421 0.90443 0.88662 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.92 10.70 55.55 0.59 -19.32 16 2 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 3 Si 0.92 17.99 29.57 -169.99 -5.03 12.96 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.45 -11.60 9.13 -37.65 -0.34 -11.94 16 8 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 9 C 0.15 3.84 5.60 -106.55 -0.60 3.25 16 10 C -0.22 -5.82 8.73 -39.06 -0.34 -6.17 16 11 C 0.11 2.70 11.10 -18.04 -0.20 2.50 16 12 N -0.55 -14.61 7.89 -12.75 -0.10 -14.71 16 13 C 0.37 8.78 7.41 -154.68 -1.15 7.64 16 14 N -0.66 -12.49 5.40 -15.86 -0.09 -12.57 16 15 C 0.71 14.15 8.66 -86.92 -0.75 13.40 16 16 O -0.51 -13.10 15.04 -12.86 -0.19 -13.29 16 17 N -0.62 -9.22 6.39 27.63 0.18 -9.04 16 18 O -0.11 -1.75 11.12 -29.62 -0.33 -2.08 16 19 C 0.03 0.31 4.50 -25.92 -0.12 0.20 16 20 C -0.16 -1.36 7.93 -25.83 -0.20 -1.56 16 21 C -0.14 -0.94 8.09 -25.83 -0.21 -1.15 16 22 C -0.13 -1.06 7.91 -25.92 -0.21 -1.26 16 23 C -0.30 -7.24 9.74 -38.46 -0.37 -7.62 16 24 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 25 H 0.13 3.49 6.11 -52.49 -0.32 3.16 16 26 H 0.12 2.83 8.06 -52.49 -0.42 2.41 16 27 H 0.40 5.60 8.72 -40.82 -0.36 5.24 16 28 H 0.40 4.00 8.40 -40.82 -0.34 3.65 16 29 H 0.10 0.75 7.90 -51.93 -0.41 0.34 16 30 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -34.08 313.81 -9.18 -43.26 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.36 Total: 11.06 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -4.58 Total: -1.00 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.58 Total: -55.65 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.52 Total: -15.37 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.08 -9.18 -43.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871732763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.894 kcal (2) G-P(sol) polarization free energy of solvation -34.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds