Wall clock time and date at job start Mon Mar 30 2020 20:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86801 * 120.00554 * 2 1 4 4 H 1.48503 * 109.46601 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47080 * 120.00002 * 3 2 1 6 6 H 1.48496 * 109.47242 * 240.00655 * 3 2 1 7 7 C 1.40035 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99695 * 4.80286 * 7 2 1 9 9 C 1.41333 * 120.00192 * 184.80286 * 7 2 1 10 10 C 1.40606 * 119.78853 * 184.86426 * 9 7 2 11 11 C 1.38312 * 119.12925 * 179.77306 * 10 9 7 12 12 C 1.38695 * 118.66955 * 0.49563 * 11 10 9 13 13 C 1.39643 * 119.49674 * 359.75026 * 12 11 10 14 14 N 1.39244 * 119.57354 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00409 * 18.73872 * 14 13 12 16 16 O 1.21579 * 119.99568 * 6.04417 * 15 14 13 17 17 N 1.34775 * 120.00353 * 186.05016 * 15 14 13 18 18 C 1.46499 * 119.99933 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.46786 * 179.97438 * 18 17 15 20 20 C 1.30994 * 120.00172 * 126.25822 * 19 18 17 21 21 C 1.50706 * 119.99803 * 7.48327 * 20 19 18 22 22 O 1.42906 * 109.46891 * 134.55311 * 21 20 19 23 23 N 1.31932 * 120.84939 * 359.97438 * 13 12 11 24 24 H 0.97003 * 120.00663 * 174.99379 * 1 2 3 25 25 H 1.07995 * 120.43548 * 0.02562 * 10 9 7 26 26 H 1.07999 * 120.66871 * 180.22093 * 11 10 9 27 27 H 1.08002 * 120.25104 * 179.77027 * 12 11 10 28 28 H 0.97004 * 119.99698 * 198.73761 * 14 13 12 29 29 H 0.96999 * 119.99883 * 359.97438 * 17 15 14 30 30 H 1.08996 * 109.46907 * 299.99498 * 18 17 15 31 31 H 1.08999 * 109.47366 * 60.00338 * 18 17 15 32 32 H 1.08003 * 119.99993 * 306.25447 * 19 18 17 33 33 H 1.08001 * 120.00680 * 187.48799 * 20 19 18 34 34 H 1.08990 * 109.47312 * 254.55566 * 21 20 19 35 35 H 1.09007 * 109.47003 * 14.56357 * 21 20 19 36 36 H 0.96699 * 113.99613 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0953 1.6962 1.2125 6 1 3.0951 1.6963 -1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 1.4703 -2.1463 -0.0793 9 6 3.4171 -1.2150 0.1019 10 6 4.1231 -2.4266 -0.0020 11 6 5.5027 -2.4124 0.0956 12 6 6.1426 -1.1996 0.3037 13 6 5.3851 -0.0308 0.4037 14 7 6.0259 1.1876 0.6132 15 6 7.3413 1.3117 0.3473 16 8 7.9444 0.3959 -0.1777 17 7 7.9882 2.4510 0.6635 18 6 9.4182 2.5857 0.3749 19 6 9.8951 3.9436 0.8219 20 6 10.9206 4.0441 1.6308 21 6 11.7272 2.8201 1.9805 22 8 13.1202 3.1252 1.8879 23 7 4.0702 -0.0660 0.3022 24 1 -0.4851 -0.8368 -0.0733 25 1 3.5953 -3.3554 -0.1600 26 1 6.0700 -3.3279 0.0158 27 1 7.2186 -1.1596 0.3875 28 1 5.5255 1.9470 0.9505 29 1 7.5070 3.1818 1.0821 30 1 9.9708 1.8124 0.9084 31 1 9.5844 2.4773 -0.6969 32 1 9.3914 4.8339 0.4753 33 1 11.1880 5.0041 2.0471 34 1 11.4905 2.5073 2.9974 35 1 11.4849 2.0149 1.2869 36 1 13.7007 2.3814 2.0998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881142527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:17 Heat of formation + Delta-G solvation = -24.095837 kcal Electronic energy + Delta-G solvation = -20507.917068 eV Core-core repulsion = 17185.713509 eV Total energy + Delta-G solvation = -3322.203559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.36157 -38.48961 -37.74474 -35.85287 -34.51559 -33.63431 -33.09360 -31.09740 -29.51139 -27.24742 -25.48315 -25.16282 -22.32197 -21.74252 -20.42991 -19.31501 -18.54355 -18.01666 -17.73473 -17.02682 -16.25420 -15.44020 -15.22253 -14.98031 -14.81833 -14.38006 -14.05776 -13.84390 -13.50182 -13.13649 -12.98335 -12.75428 -12.41809 -12.20345 -11.84976 -11.27820 -11.22233 -10.80814 -10.55308 -10.37186 -10.02091 -9.82778 -9.63462 -9.34101 -9.16533 -9.00717 -8.54061 -7.78852 -7.35056 -7.24276 -4.77029 1.51457 2.39780 2.66080 2.82618 3.40251 3.53076 3.65813 3.95907 3.98006 4.32828 4.38424 4.44668 4.65598 4.67815 4.82336 5.03885 5.23773 5.45965 5.52965 5.56143 5.83546 6.08228 6.10441 6.17890 6.36695 6.42074 6.54508 6.66828 6.89196 7.16830 7.22039 7.32862 7.44906 7.62299 7.75957 7.90837 8.19325 8.33068 8.63462 8.73036 9.41860 10.00133 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.003836 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.399268 B = 7298.157852 C = 8121.327481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.043 3.957 3 Si 1.158 2.842 4 H -0.333 1.333 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.477 4.477 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.280 4.280 11 C -0.034 4.034 12 C -0.312 4.312 13 C 0.405 3.595 14 N -0.667 5.667 15 C 0.709 3.291 16 O -0.564 6.564 17 N -0.742 5.742 18 C 0.158 3.842 19 C -0.163 4.163 20 C -0.133 4.133 21 C 0.090 3.910 22 O -0.571 6.571 23 N -0.601 5.601 24 H 0.283 0.717 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.141 0.859 28 H 0.404 0.596 29 H 0.398 0.602 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.716 7.520 4.177 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.178 4.178 3 Si 0.994 3.006 4 H -0.267 1.267 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.101 0.899 9 C 0.151 3.849 10 C -0.302 4.302 11 C -0.058 4.058 12 C -0.337 4.337 13 C 0.174 3.826 14 N -0.314 5.314 15 C 0.409 3.591 16 O -0.440 6.440 17 N -0.399 5.399 18 C 0.034 3.966 19 C -0.181 4.181 20 C -0.152 4.152 21 C 0.013 3.987 22 O -0.377 6.377 23 N -0.327 5.327 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.158 0.842 28 H 0.239 0.761 29 H 0.232 0.768 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 17.290 9.518 3.654 20.072 hybrid contribution 0.141 -2.400 0.361 2.431 sum 17.431 7.118 4.015 19.252 Atomic orbital electron populations 1.70642 1.08170 1.32798 1.31268 1.27781 0.95331 1.06205 0.88520 0.81788 0.70517 0.69565 0.78696 1.26707 1.21155 1.22258 1.20717 0.90335 0.96330 1.43498 0.89864 1.18262 0.93403 0.85906 0.87366 1.21583 0.93945 0.98359 1.16324 1.20925 0.94067 0.96402 0.94402 1.21531 1.01169 0.91026 1.19930 1.17786 0.88564 0.83253 0.93037 1.42338 1.08061 1.13572 1.67460 1.15699 0.81206 0.82956 0.79240 1.90855 1.66758 1.38800 1.47596 1.45040 1.10198 1.17190 1.67502 1.20294 0.79967 0.94729 1.01601 1.22902 0.99380 0.98136 0.97717 1.22663 0.96196 0.99397 0.96959 1.21359 0.81186 0.95694 1.00476 1.86467 1.16348 1.41796 1.93128 1.65939 1.06971 1.29629 1.30193 0.90592 0.87707 0.87633 0.84174 0.76073 0.76798 0.90490 0.90534 0.85708 0.86068 0.92486 0.91755 0.76999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.01 13.65 55.55 0.76 -21.25 16 2 C 0.04 1.16 5.52 -17.34 -0.10 1.06 16 3 Si 1.16 28.01 25.61 -169.99 -4.35 23.66 16 4 H -0.33 -7.95 7.11 56.52 0.40 -7.55 16 5 H -0.28 -6.54 6.60 56.52 0.37 -6.16 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.48 -13.06 9.57 -37.73 -0.36 -13.42 16 8 H 0.08 2.27 8.05 -52.49 -0.42 1.85 16 9 C 0.27 7.28 6.40 -85.00 -0.54 6.73 16 10 C -0.28 -6.73 9.83 -38.66 -0.38 -7.11 16 11 C -0.03 -0.75 10.15 -39.39 -0.40 -1.15 16 12 C -0.31 -7.11 8.83 -38.89 -0.34 -7.45 16 13 C 0.40 9.38 7.51 -154.99 -1.16 8.22 16 14 N -0.67 -12.45 5.42 -15.79 -0.09 -12.54 16 15 C 0.71 12.02 8.40 -86.92 -0.73 11.29 16 16 O -0.56 -11.38 13.15 5.30 0.07 -11.31 16 17 N -0.74 -8.72 5.55 -66.42 -0.37 -9.09 16 18 C 0.16 1.60 5.73 -5.19 -0.03 1.57 16 19 C -0.16 -1.26 9.63 -36.02 -0.35 -1.60 16 20 C -0.13 -1.04 9.89 -36.02 -0.36 -1.40 16 21 C 0.09 0.69 6.95 36.01 0.25 0.94 16 22 O -0.57 -4.64 13.64 -35.23 -0.48 -5.12 16 23 N -0.60 -15.33 4.54 -10.26 -0.05 -15.38 16 24 H 0.28 7.38 8.72 -40.82 -0.36 7.03 16 25 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 26 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 27 H 0.14 3.14 5.33 -52.50 -0.28 2.86 16 28 H 0.40 6.54 8.84 -40.82 -0.36 6.17 16 29 H 0.40 3.55 8.49 -40.82 -0.35 3.21 16 30 H 0.08 0.80 5.41 -51.93 -0.28 0.52 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.49 5.59 -51.93 -0.29 0.20 16 36 H 0.38 1.39 9.12 45.56 0.42 1.81 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -33.32 308.84 -7.64 -40.95 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -3.28 Total: 7.74 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.50 Total: -2.32 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.26 Total: -58.26 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.41 Total: -16.43 kcal Atomic # 14 Polarization: 28.01 SS G_CDS: -4.35 Total: 23.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.32 -7.64 -40.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.858 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds