Wall clock time and date at job start Mon Mar 30 2020 20:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86801 * 120.00554 * 2 1 4 4 H 1.48503 * 109.46601 * 0.02562 * 3 2 1 5 5 H 1.48496 * 109.47080 * 120.00002 * 3 2 1 6 6 H 1.48496 * 109.47242 * 240.00655 * 3 2 1 7 7 C 1.40035 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99695 * 4.80286 * 7 2 1 9 9 C 1.41333 * 120.00192 * 184.80286 * 7 2 1 10 10 C 1.40606 * 119.78853 * 184.86426 * 9 7 2 11 11 C 1.38312 * 119.12925 * 179.77306 * 10 9 7 12 12 C 1.38695 * 118.66955 * 0.49563 * 11 10 9 13 13 C 1.39643 * 119.49674 * 359.75026 * 12 11 10 14 14 N 1.39244 * 119.57354 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00409 * 18.73872 * 14 13 12 16 16 O 1.21579 * 119.99568 * 6.04417 * 15 14 13 17 17 N 1.34775 * 120.00353 * 186.05016 * 15 14 13 18 18 C 1.46499 * 119.99933 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.46786 * 179.97438 * 18 17 15 20 20 C 1.30994 * 120.00172 * 126.25822 * 19 18 17 21 21 C 1.50706 * 119.99803 * 7.48327 * 20 19 18 22 22 O 1.42906 * 109.46891 * 134.55311 * 21 20 19 23 23 N 1.31932 * 120.84939 * 359.97438 * 13 12 11 24 24 H 0.97003 * 120.00663 * 174.99379 * 1 2 3 25 25 H 1.07995 * 120.43548 * 0.02562 * 10 9 7 26 26 H 1.07999 * 120.66871 * 180.22093 * 11 10 9 27 27 H 1.08002 * 120.25104 * 179.77027 * 12 11 10 28 28 H 0.97004 * 119.99698 * 198.73761 * 14 13 12 29 29 H 0.96999 * 119.99883 * 359.97438 * 17 15 14 30 30 H 1.08996 * 109.46907 * 299.99498 * 18 17 15 31 31 H 1.08999 * 109.47366 * 60.00338 * 18 17 15 32 32 H 1.08003 * 119.99993 * 306.25447 * 19 18 17 33 33 H 1.08001 * 120.00680 * 187.48799 * 20 19 18 34 34 H 1.08990 * 109.47312 * 254.55566 * 21 20 19 35 35 H 1.09007 * 109.47003 * 14.56357 * 21 20 19 36 36 H 0.96699 * 113.99613 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 1.2765 2.7464 0.0006 5 1 3.0953 1.6962 1.2125 6 1 3.0951 1.6963 -1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 1.4703 -2.1463 -0.0793 9 6 3.4171 -1.2150 0.1019 10 6 4.1231 -2.4266 -0.0020 11 6 5.5027 -2.4124 0.0956 12 6 6.1426 -1.1996 0.3037 13 6 5.3851 -0.0308 0.4037 14 7 6.0259 1.1876 0.6132 15 6 7.3413 1.3117 0.3473 16 8 7.9444 0.3959 -0.1777 17 7 7.9882 2.4510 0.6635 18 6 9.4182 2.5857 0.3749 19 6 9.8951 3.9436 0.8219 20 6 10.9206 4.0441 1.6308 21 6 11.7272 2.8201 1.9805 22 8 13.1202 3.1252 1.8879 23 7 4.0702 -0.0660 0.3022 24 1 -0.4851 -0.8368 -0.0733 25 1 3.5953 -3.3554 -0.1600 26 1 6.0700 -3.3279 0.0158 27 1 7.2186 -1.1596 0.3875 28 1 5.5255 1.9470 0.9505 29 1 7.5070 3.1818 1.0821 30 1 9.9708 1.8124 0.9084 31 1 9.5844 2.4773 -0.6969 32 1 9.3914 4.8339 0.4753 33 1 11.1880 5.0041 2.0471 34 1 11.4905 2.5073 2.9974 35 1 11.4849 2.0149 1.2869 36 1 13.7007 2.3814 2.0998 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881142527.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:17 Heat of formation + Delta-G solvation = -49.512117 kcal Electronic energy + Delta-G solvation = -20509.019200 eV Core-core repulsion = 17185.713509 eV Total energy + Delta-G solvation = -3323.305692 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82376 -40.12805 -38.47956 -36.78949 -36.13548 -35.38841 -34.12507 -32.97303 -31.25386 -28.14711 -27.19941 -26.07196 -23.92107 -23.51863 -21.88572 -20.61314 -19.99386 -19.32214 -18.51184 -18.36123 -17.28058 -16.87406 -16.70603 -16.54552 -15.92359 -15.65662 -15.43552 -15.16101 -14.84357 -14.62107 -14.33232 -14.21926 -13.76344 -13.66216 -13.22213 -12.97077 -12.67335 -12.23544 -11.88986 -11.78132 -11.60782 -11.18119 -11.13732 -11.02309 -10.44580 -10.36481 -9.93460 -9.72171 -9.25922 -9.14134 -6.80793 0.59595 0.75969 0.83483 1.53682 1.61963 1.71447 2.00241 2.06648 2.45776 2.69972 3.11857 3.48603 3.58227 3.80303 4.05654 4.08413 4.22824 4.40555 4.46861 4.56361 4.62314 4.70725 4.72383 4.80854 4.93998 5.29254 5.36309 5.38021 5.45015 5.51011 5.67188 5.70693 5.78801 5.92275 6.05566 6.42103 6.62286 6.84453 6.85667 7.36602 7.52579 7.95739 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029148 B = 0.003836 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.399268 B = 7298.157852 C = 8121.327481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.013 3.987 3 Si 1.190 2.810 4 H -0.330 1.330 5 H -0.268 1.268 6 H -0.303 1.303 7 C -0.508 4.508 8 H 0.068 0.932 9 C 0.259 3.741 10 C -0.295 4.295 11 C -0.026 4.026 12 C -0.308 4.308 13 C 0.396 3.604 14 N -0.664 5.664 15 C 0.708 3.292 16 O -0.597 6.597 17 N -0.718 5.718 18 C 0.155 3.845 19 C -0.159 4.159 20 C -0.134 4.134 21 C 0.085 3.915 22 O -0.589 6.589 23 N -0.614 5.614 24 H 0.280 0.720 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.416 0.584 29 H 0.415 0.585 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.178 8.704 4.791 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.203 4.203 3 Si 1.023 2.977 4 H -0.263 1.263 5 H -0.195 1.195 6 H -0.231 1.231 7 C -0.541 4.541 8 H 0.086 0.914 9 C 0.134 3.866 10 C -0.317 4.317 11 C -0.050 4.050 12 C -0.332 4.332 13 C 0.163 3.837 14 N -0.313 5.313 15 C 0.408 3.592 16 O -0.476 6.476 17 N -0.375 5.375 18 C 0.032 3.968 19 C -0.177 4.177 20 C -0.153 4.153 21 C 0.008 3.992 22 O -0.398 6.398 23 N -0.340 5.340 24 H 0.091 0.909 25 H 0.132 0.868 26 H 0.161 0.839 27 H 0.168 0.832 28 H 0.253 0.747 29 H 0.252 0.748 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 19.787 10.748 4.305 22.926 hybrid contribution -0.340 -2.811 0.181 2.837 sum 19.448 7.937 4.486 21.479 Atomic orbital electron populations 1.70666 1.08462 1.32685 1.33477 1.28595 0.95610 1.08060 0.88064 0.81393 0.69875 0.67653 0.78787 1.26318 1.19504 1.23145 1.20712 0.91240 0.95996 1.46133 0.91363 1.18443 0.93378 0.87294 0.87512 1.21748 0.94983 0.98046 1.16966 1.21333 0.93448 0.97833 0.92401 1.21875 1.01727 0.91249 1.18370 1.18101 0.88065 0.85175 0.92314 1.42279 1.08791 1.12651 1.67542 1.15832 0.80500 0.83867 0.78973 1.90818 1.67153 1.40445 1.49141 1.44914 1.10784 1.15914 1.65885 1.20417 0.78645 0.96403 1.01300 1.22816 0.99740 0.97274 0.97871 1.22844 0.96022 0.99899 0.96545 1.21410 0.81166 0.95639 1.00938 1.86420 1.16806 1.43317 1.93289 1.65935 1.08138 1.29453 1.30484 0.90881 0.86762 0.83851 0.83245 0.74680 0.74790 0.90539 0.91299 0.83911 0.85136 0.91623 0.92018 0.75008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.28 13.65 21.84 0.30 -45.98 16 2 C 0.01 0.72 5.52 85.29 0.47 1.19 16 3 Si 1.19 56.53 25.61 68.60 1.76 58.29 16 4 H -0.33 -15.27 7.11 99.48 0.71 -14.56 16 5 H -0.27 -11.86 6.60 99.48 0.66 -11.20 16 6 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 7 C -0.51 -28.50 9.57 23.47 0.22 -28.28 16 8 H 0.07 3.89 8.05 -2.91 -0.02 3.86 16 9 C 0.26 13.70 6.40 40.20 0.26 13.96 16 10 C -0.30 -13.94 9.83 22.87 0.22 -13.72 16 11 C -0.03 -1.09 10.15 22.40 0.23 -0.86 16 12 C -0.31 -13.33 8.83 22.72 0.20 -13.13 16 13 C 0.40 17.62 7.51 133.24 1.00 18.62 16 14 N -0.66 -23.27 5.42 -322.14 -1.75 -25.01 16 15 C 0.71 22.29 8.40 179.06 1.50 23.79 16 16 O -0.60 -22.83 13.15 -3.96 -0.05 -22.88 16 17 N -0.72 -14.81 5.55 -482.31 -2.68 -17.48 16 18 C 0.16 2.75 5.73 85.63 0.49 3.24 16 19 C -0.16 -1.97 9.63 25.65 0.25 -1.72 16 20 C -0.13 -1.73 9.89 25.66 0.25 -1.47 16 21 C 0.09 1.12 6.95 71.24 0.50 1.62 16 22 O -0.59 -8.40 13.64 -148.98 -2.03 -10.44 16 23 N -0.61 -30.68 4.54 -186.37 -0.85 -31.52 16 24 H 0.28 15.17 8.72 -92.71 -0.81 14.36 16 25 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.14 4.86 8.06 -2.91 -0.02 4.83 16 27 H 0.15 6.30 5.33 -3.13 -0.02 6.28 16 28 H 0.42 12.37 8.84 -92.70 -0.82 11.55 16 29 H 0.42 5.97 8.49 -92.71 -0.79 5.18 16 30 H 0.08 1.41 5.41 -2.39 -0.01 1.40 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.13 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.83 5.59 -2.38 -0.01 0.81 16 36 H 0.40 2.19 9.12 -74.06 -0.68 1.51 16 Total: -1.00 -70.96 308.84 -0.92 -71.88 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -1.22 Total: 19.90 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.60 Total: 3.24 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -4.97 Total: -120.00 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -2.08 Total: -33.32 kcal Atomic # 14 Polarization: 56.53 SS G_CDS: 1.76 Total: 58.29 kcal Total: -70.96 -0.92 -71.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881142527.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.367 kcal (2) G-P(sol) polarization free energy of solvation -70.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds