Wall clock time and date at job start Mon Mar 30 2020 20:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86795 * 119.99599 * 2 1 4 4 H 1.48493 * 109.47570 * 269.72516 * 3 2 1 5 5 H 1.48499 * 109.47150 * 29.73318 * 3 2 1 6 6 H 1.48508 * 109.46773 * 149.72581 * 3 2 1 7 7 C 1.40025 * 119.99948 * 179.73343 * 2 1 3 8 8 H 1.08010 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.41332 * 120.00440 * 359.97438 * 7 2 1 10 10 C 1.40608 * 119.78743 * 179.72825 * 9 7 2 11 11 C 1.38319 * 119.12704 * 179.79897 * 10 9 7 12 12 C 1.38689 * 118.66662 * 0.47329 * 11 10 9 13 13 C 1.39638 * 119.50015 * 359.75156 * 12 11 10 14 14 N 1.39249 * 119.57579 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00085 * 174.63421 * 14 13 12 16 16 O 1.21571 * 119.99564 * 5.15596 * 15 14 13 17 17 N 1.34778 * 119.99908 * 185.15070 * 15 14 13 18 18 C 1.46495 * 119.99853 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.45877 * 327.60678 * 18 17 15 20 20 C 1.54504 * 110.51201 * 205.00054 * 18 17 15 21 21 C 1.54482 * 104.06618 * 241.35711 * 20 18 17 22 22 O 1.44434 * 104.80059 * 23.98024 * 21 20 18 23 23 C 1.44433 * 105.27145 * 319.48713 * 22 21 20 24 24 N 1.31928 * 120.85151 * 0.02562 * 13 12 11 25 25 H 0.96992 * 120.00276 * 0.27071 * 1 2 3 26 26 H 1.08000 * 120.43860 * 0.02562 * 10 9 7 27 27 H 1.07994 * 120.66275 * 180.22593 * 11 10 9 28 28 H 1.08000 * 120.24467 * 179.72763 * 12 11 10 29 29 H 0.96998 * 119.99732 * 354.63753 * 14 13 12 30 30 H 0.96997 * 120.00042 * 0.02562 * 17 15 14 31 31 H 1.09000 * 110.51496 * 0.02562 * 20 18 17 32 32 H 1.08999 * 110.51426 * 122.57864 * 20 18 17 33 33 H 1.08997 * 110.37614 * 142.80466 * 21 20 18 34 34 H 1.08999 * 110.37371 * 265.15035 * 21 20 18 35 35 H 1.08996 * 110.37281 * 281.67981 * 23 22 21 36 36 H 1.08997 * 110.36668 * 159.34721 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4946 2.0432 -1.4000 5 1 1.4359 2.6543 0.6944 6 1 3.5360 1.4419 0.7059 7 6 2.0076 -1.2126 0.0056 8 1 3.0877 -1.2126 0.0052 9 6 1.3010 -2.4367 0.0119 10 6 2.0086 -3.6517 0.0117 11 6 1.3034 -4.8415 0.0221 12 6 -0.0827 -4.7934 0.0223 13 6 -0.7277 -3.5549 0.0173 14 7 -2.1193 -3.5048 0.0170 15 6 -2.7509 -2.3187 0.1214 16 8 -2.1091 -1.2863 0.1214 17 7 -4.0940 -2.2774 0.2256 18 6 -4.7806 -0.9882 0.3385 19 1 -4.1587 -0.2710 0.8741 20 6 -6.1422 -1.1603 1.0481 21 6 -7.1753 -0.7042 -0.0060 22 8 -6.5115 -0.8859 -1.2759 23 6 -5.1520 -0.4484 -1.0605 24 7 -0.0357 -2.4317 0.0120 25 1 -0.4850 0.8399 -0.0040 26 1 3.0886 -3.6559 0.0073 27 1 1.8217 -5.7890 0.0259 28 1 -0.6587 -5.7070 0.0259 29 1 -2.6341 -4.3234 -0.0584 30 1 -4.6061 -3.1012 0.2258 31 1 -6.3044 -2.2045 1.3153 32 1 -6.1936 -0.5282 1.9346 33 1 -8.0701 -1.3243 0.0464 34 1 -7.4305 0.3451 0.1420 35 1 -5.0969 0.6400 -1.0742 36 1 -4.4926 -0.8721 -1.8180 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:20 Heat of formation + Delta-G solvation = -7.509134 kcal Electronic energy + Delta-G solvation = -21536.261336 eV Core-core repulsion = 18214.777030 eV Total energy + Delta-G solvation = -3321.484306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94763 -38.88122 -37.49887 -34.32975 -33.74750 -32.96341 -30.84751 -30.24075 -29.11214 -28.03692 -25.47739 -23.17881 -22.21080 -21.31164 -20.73357 -19.78569 -18.06519 -17.24334 -16.62433 -16.09954 -15.91678 -15.31163 -14.65029 -14.43001 -14.38911 -14.15787 -13.67439 -13.07714 -12.96357 -12.81156 -12.19147 -12.01407 -11.75963 -11.63076 -11.48337 -11.13578 -11.04954 -10.92365 -10.62086 -10.43772 -9.96694 -9.90695 -9.65675 -9.11713 -9.00063 -8.46389 -7.92516 -7.18821 -6.91859 -6.08550 -4.36291 2.86443 3.14861 3.18955 3.21409 3.22902 3.29836 3.94514 4.09111 4.18917 4.54334 4.71850 4.85037 4.95401 4.99376 5.16075 5.39445 5.54043 5.59450 5.75988 5.90522 6.01930 6.07853 6.12765 6.50210 6.61992 6.72504 6.83380 6.87756 7.00225 7.26301 7.38482 7.64664 7.76628 7.84483 8.19866 8.32340 8.67575 8.82678 9.09100 9.59363 10.29770 10.52388 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.016830 B = 0.005890 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.255242 B = 4752.856338 C = 6194.317747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.649 5.649 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.386 3.614 14 N -0.673 5.673 15 C 0.663 3.337 16 O -0.463 6.463 17 N -0.750 5.750 18 C 0.140 3.860 19 H 0.105 0.895 20 C -0.162 4.162 21 C 0.044 3.956 22 O -0.378 6.378 23 C 0.033 3.967 24 N -0.471 5.471 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.395 0.605 30 H 0.386 0.614 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 -1.419 1.579 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.268 5.268 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.330 4.330 11 C -0.060 4.060 12 C -0.384 4.384 13 C 0.146 3.854 14 N -0.321 5.321 15 C 0.361 3.639 16 O -0.326 6.326 17 N -0.410 5.410 18 C 0.033 3.967 19 H 0.123 0.877 20 C -0.201 4.201 21 C -0.033 4.033 22 O -0.297 6.297 23 C -0.045 4.045 24 N -0.190 5.190 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.219 0.781 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.611 0.525 1.406 12.700 hybrid contribution 0.341 -0.971 0.172 1.043 sum -12.270 -0.446 1.579 12.379 Atomic orbital electron populations 1.70352 1.05579 1.27210 1.23612 1.26187 0.95142 1.00497 0.95432 0.86549 0.80579 0.82027 0.78982 1.19702 1.20389 1.18791 1.19572 0.94026 0.89393 1.42633 0.90014 1.18392 0.87166 0.91940 0.87891 1.21627 0.98534 0.93554 1.19254 1.20543 0.93118 0.96513 0.95836 1.20436 0.94761 0.94807 1.28413 1.18342 0.82435 0.90914 0.93663 1.42556 1.05248 1.07814 1.76479 1.16474 0.81346 0.85567 0.80490 1.91386 1.62315 1.29874 1.49070 1.45361 1.05737 1.07812 1.82062 1.21955 0.92680 0.86657 0.95440 0.87691 1.23259 0.94315 1.03222 0.99263 1.23395 0.95989 1.00573 0.83339 1.89140 1.23246 1.86266 1.31041 1.23990 0.83134 0.99139 0.98224 1.68692 1.06849 1.23102 1.20318 0.91733 0.88606 0.88645 0.89179 0.77216 0.78141 0.90092 0.89609 0.89245 0.92246 0.91565 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.07 8.98 55.55 0.50 -17.57 16 2 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 3 Si 0.89 19.38 29.56 -169.99 -5.02 14.36 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.43 -11.83 9.14 -37.74 -0.34 -12.17 16 8 H 0.08 2.13 7.85 -52.48 -0.41 1.71 16 9 C 0.27 7.71 6.55 -85.00 -0.56 7.15 16 10 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.14 9.95 -38.89 -0.39 -8.52 16 13 C 0.39 9.54 7.43 -154.99 -1.15 8.39 16 14 N -0.67 -13.44 5.39 -15.79 -0.09 -13.53 16 15 C 0.66 13.52 8.52 -86.91 -0.74 12.78 16 16 O -0.46 -11.64 11.75 5.30 0.06 -11.58 16 17 N -0.75 -11.12 5.09 -57.15 -0.29 -11.42 16 18 C 0.14 1.89 3.48 -66.37 -0.23 1.66 16 19 H 0.11 1.63 7.55 -51.93 -0.39 1.24 16 20 C -0.16 -1.57 6.85 -25.16 -0.17 -1.74 16 21 C 0.04 0.42 7.63 37.94 0.29 0.71 16 22 O -0.38 -5.02 11.65 -35.23 -0.41 -5.44 16 23 C 0.03 0.46 7.35 37.93 0.28 0.74 16 24 N -0.47 -13.36 5.74 -10.26 -0.06 -13.42 16 25 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.39 6.10 8.71 -40.82 -0.36 5.74 16 30 H 0.39 4.57 8.40 -40.82 -0.34 4.22 16 31 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 1.55 8.06 -51.93 -0.42 1.13 16 LS Contribution 305.17 15.07 4.60 4.60 Total: -1.00 -33.40 305.17 -9.02 -42.42 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.41 Total: 10.59 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -3.89 Total: 0.99 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.06 Total: -55.93 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.35 Total: -17.02 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.40 -9.02 -42.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.907 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds