Wall clock time and date at job start Mon Mar 30 2020 20:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86792 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46886 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47716 * 299.99977 * 3 2 1 6 6 H 1.48502 * 109.47370 * 60.00278 * 3 2 1 7 7 C 1.40030 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00071 * 359.97438 * 7 2 1 10 10 C 1.40606 * 119.78635 * 180.24940 * 9 7 2 11 11 C 1.38321 * 119.12820 * 180.31829 * 10 9 7 12 12 C 1.38686 * 118.67040 * 359.44329 * 11 10 9 13 13 C 1.39649 * 119.49312 * 0.27128 * 12 11 10 14 14 N 1.39254 * 119.56909 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99667 * 174.64483 * 14 13 12 16 16 O 1.21576 * 119.99739 * 5.16090 * 15 14 13 17 17 N 1.34766 * 120.00078 * 185.15479 * 15 14 13 18 18 C 1.47069 * 136.05800 * 359.63484 * 17 15 14 19 19 C 1.53752 * 87.88955 * 152.96095 * 18 17 15 20 20 C 1.53005 * 114.26494 * 139.79230 * 19 18 17 21 21 O 1.42902 * 109.47187 * 91.47606 * 20 19 18 22 22 C 1.47067 * 136.06128 * 180.02562 * 17 15 14 23 23 N 1.31920 * 120.85112 * 0.02739 * 13 12 11 24 24 H 0.96997 * 120.00033 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.43770 * 0.05522 * 10 9 7 26 26 H 1.07999 * 120.66223 * 179.71339 * 11 10 9 27 27 H 1.07993 * 120.25332 * 180.25246 * 12 11 10 28 28 H 0.96994 * 120.00185 * 354.64881 * 14 13 12 29 29 H 1.09009 * 113.46845 * 267.69481 * 18 17 15 30 30 H 1.09002 * 113.47086 * 38.13006 * 18 17 15 31 31 H 1.09001 * 114.39613 * 272.67027 * 19 18 17 32 32 H 1.09004 * 109.46653 * 211.47300 * 20 19 18 33 33 H 1.08997 * 109.47138 * 331.46990 * 20 19 18 34 34 H 0.96700 * 113.99956 * 179.97438 * 21 20 19 35 35 H 1.09003 * 113.46276 * 321.86210 * 22 17 15 36 36 H 1.08999 * 113.47281 * 92.24365 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3965 -1.2124 6 1 1.8827 2.3964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3010 -2.4367 -0.0005 10 6 2.0085 -3.6517 0.0042 11 6 1.3033 -4.8416 -0.0026 12 6 -0.0828 -4.7935 -0.0020 13 6 -0.7278 -3.5549 -0.0005 14 7 -2.1194 -3.5048 -0.0005 15 6 -2.7510 -2.3193 0.1099 16 8 -2.1091 -1.2868 0.1150 17 7 -4.0940 -2.2784 0.2145 18 6 -5.1847 -3.2646 0.2394 19 6 -6.0019 -2.2556 1.0628 20 6 -7.4812 -2.1822 0.6788 21 8 -8.2281 -3.0971 1.4833 22 6 -5.1144 -1.2277 0.3471 23 7 -0.0357 -2.4318 -0.0001 24 1 -0.4850 0.8400 0.0004 25 1 3.0885 -3.6559 0.0088 26 1 1.8216 -5.7891 -0.0038 27 1 -0.6589 -5.7070 -0.0031 28 1 -2.6342 -4.3230 -0.0799 29 1 -5.6091 -3.4674 -0.7439 30 1 -4.9357 -4.1736 0.7872 31 1 -5.8387 -2.3153 2.1388 32 1 -7.8494 -1.1695 0.8432 33 1 -7.5971 -2.4447 -0.3727 34 1 -9.1764 -3.1037 1.2940 35 1 -4.8054 -0.4008 0.9866 36 1 -5.5196 -0.8930 -0.6079 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881147628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:28 Heat of formation + Delta-G solvation = 2.360582 kcal Electronic energy + Delta-G solvation = -21210.197210 eV Core-core repulsion = 17889.140888 eV Total energy + Delta-G solvation = -3321.056323 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54076 -40.28811 -38.77681 -37.15387 -35.89752 -34.83955 -32.28380 -31.80746 -30.41990 -27.59201 -26.90862 -26.52009 -23.71747 -23.02848 -21.64602 -20.46342 -19.65669 -18.52367 -18.17205 -17.98845 -17.01953 -16.57786 -16.29193 -16.09602 -15.74617 -15.64246 -15.12632 -14.72355 -14.27159 -14.06830 -13.77036 -13.63352 -13.43179 -13.20816 -12.90705 -12.72777 -12.54781 -12.32456 -12.00065 -11.74503 -11.65548 -11.55635 -10.91312 -10.90022 -10.69955 -9.91826 -9.55159 -9.13097 -8.80024 -8.03376 -6.42806 0.94028 1.26497 1.38492 1.51036 1.53945 1.54810 2.26170 2.48897 2.99320 3.01831 3.11746 3.61217 3.99425 4.05627 4.25975 4.35524 4.40671 4.47113 4.55424 4.57473 4.69071 4.71762 4.78028 4.87359 4.95468 5.02403 5.05783 5.26716 5.31715 5.66854 5.84327 5.91587 6.10824 6.34060 6.42160 6.82743 7.01631 7.05251 7.18029 7.94108 8.36436 8.57735 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019780 B = 0.004993 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.230451 B = 5605.949965 C = 6938.614501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.690 5.690 2 C 0.008 3.992 3 Si 0.977 3.023 4 H -0.252 1.252 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.466 4.466 8 H 0.088 0.912 9 C 0.236 3.764 10 C -0.328 4.328 11 C -0.032 4.032 12 C -0.346 4.346 13 C 0.363 3.637 14 N -0.659 5.659 15 C 0.686 3.314 16 O -0.517 6.517 17 N -0.681 5.681 18 C 0.104 3.896 19 C -0.108 4.108 20 C 0.095 3.905 21 O -0.593 6.593 22 C 0.132 3.868 23 N -0.510 5.510 24 H 0.268 0.732 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.414 0.586 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.400 0.600 35 H 0.060 0.940 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 -4.430 -0.327 17.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.309 5.309 2 C -0.217 4.217 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.497 4.497 8 H 0.106 0.894 9 C 0.111 3.889 10 C -0.351 4.351 11 C -0.056 4.056 12 C -0.371 4.371 13 C 0.123 3.877 14 N -0.309 5.309 15 C 0.388 3.612 16 O -0.385 6.385 17 N -0.425 5.425 18 C -0.018 4.018 19 C -0.128 4.128 20 C 0.017 3.983 21 O -0.402 6.402 22 C 0.008 3.992 23 N -0.229 5.229 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.250 0.750 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.250 -2.794 -0.083 16.488 hybrid contribution 0.213 -0.382 -0.265 0.511 sum -16.037 -3.175 -0.349 16.352 Atomic orbital electron populations 1.70589 1.07363 1.27801 1.25141 1.27114 0.95987 1.04220 0.94425 0.85244 0.79650 0.76982 0.78344 1.17473 1.19535 1.19671 1.19952 0.94497 0.90418 1.44789 0.89402 1.18920 0.87797 0.93571 0.88661 1.21828 0.99307 0.93742 1.20271 1.21032 0.93303 0.97448 0.93830 1.20901 0.95263 0.95345 1.25629 1.18860 0.83927 0.91258 0.93626 1.42340 1.03932 1.08712 1.75882 1.16071 0.80583 0.84876 0.79706 1.91368 1.62721 1.32018 1.52368 1.48895 1.01543 1.13453 1.78589 1.23315 0.83863 0.93939 1.00658 1.22840 0.93829 0.95874 1.00236 1.21981 0.88445 0.93367 0.94506 1.86438 1.25379 1.64163 1.64265 1.22856 0.83730 0.92127 1.00439 1.68638 1.07427 1.25360 1.21496 0.92121 0.87485 0.84203 0.85137 0.74958 0.87854 0.90395 0.88679 0.91447 0.91062 0.74984 0.92133 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.91 8.99 21.84 0.20 -41.72 16 2 C 0.01 0.44 5.50 85.29 0.47 0.91 16 3 Si 0.98 42.18 29.56 68.60 2.03 44.20 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 5 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.47 -27.49 9.14 23.47 0.21 -27.27 16 8 H 0.09 4.83 7.85 -2.91 -0.02 4.81 16 9 C 0.24 14.21 6.55 40.20 0.26 14.47 16 10 C -0.33 -17.13 9.83 22.87 0.22 -16.91 16 11 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 12 C -0.35 -15.50 9.95 22.72 0.23 -15.27 16 13 C 0.36 18.76 7.43 133.24 0.99 19.75 16 14 N -0.66 -28.33 5.39 -322.14 -1.74 -30.06 16 15 C 0.69 31.35 8.75 179.06 1.57 32.92 16 16 O -0.52 -29.61 12.88 -3.95 -0.05 -29.66 16 17 N -0.68 -22.28 3.69 -876.03 -3.23 -25.51 16 18 C 0.10 2.20 7.88 83.26 0.66 2.85 16 19 C -0.11 -2.06 4.37 -10.37 -0.05 -2.10 16 20 C 0.10 1.14 6.97 71.98 0.50 1.64 16 21 O -0.59 -8.03 13.66 -148.98 -2.04 -10.07 16 22 C 0.13 3.28 8.19 83.18 0.68 3.96 16 23 N -0.51 -30.99 5.74 -186.37 -1.07 -32.06 16 24 H 0.27 15.37 8.29 -92.71 -0.77 14.60 16 25 H 0.11 5.16 8.06 -2.91 -0.02 5.14 16 26 H 0.14 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.41 13.69 8.42 -92.71 -0.78 12.91 16 29 H 0.10 1.66 7.88 -2.38 -0.02 1.64 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 32 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.07 0.60 7.81 -2.39 -0.02 0.58 16 34 H 0.40 1.54 9.12 -74.06 -0.68 0.87 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 2.01 8.11 -2.39 -0.02 1.99 16 Total: -1.00 -83.56 310.13 -0.25 -83.81 By element: Atomic # 1 Polarization: 27.66 SS G_CDS: -0.33 Total: 27.33 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.97 Total: 13.72 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -5.84 Total: -129.34 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.09 Total: -39.73 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -83.56 -0.25 -83.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881147628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.174 kcal (2) G-P(sol) polarization free energy of solvation -83.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds