Wall clock time and date at job start Mon Mar 30 2020 20:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86806 * 119.99802 * 2 1 4 4 H 1.48496 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46771 * 300.00231 * 3 2 1 6 6 H 1.48504 * 109.46824 * 59.99891 * 3 2 1 7 7 C 1.40021 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00081 * 179.97438 * 7 2 1 9 9 C 1.41338 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.40604 * 119.78792 * 179.97438 * 9 7 2 11 11 C 1.38309 * 119.12706 * 180.02562 * 10 9 7 12 12 C 1.38692 * 118.67259 * 0.27295 * 11 10 9 13 13 C 1.39641 * 119.49386 * 359.45779 * 12 11 10 14 14 N 1.39250 * 119.57510 * 180.27934 * 13 12 11 15 15 C 1.34780 * 119.99755 * 174.60679 * 14 13 12 16 16 O 1.21572 * 120.00343 * 5.14827 * 15 14 13 17 17 N 1.34779 * 119.99848 * 185.14452 * 15 14 13 18 18 C 1.47030 * 125.64405 * 0.03064 * 17 15 14 19 19 C 1.54332 * 107.26678 * 181.01916 * 18 17 15 20 20 C 1.55164 * 102.94254 * 22.19138 * 19 18 17 21 21 H 1.08993 * 111.00062 * 82.57036 * 20 19 18 22 22 O 1.42895 * 111.00037 * 206.42493 * 20 19 18 23 23 C 1.47422 * 125.65067 * 179.71505 * 17 15 14 24 24 N 1.31933 * 120.84987 * 0.55718 * 13 12 11 25 25 H 0.96998 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.43597 * 0.04532 * 10 9 7 27 27 H 1.08001 * 120.66716 * 180.02562 * 11 10 9 28 28 H 1.08001 * 120.25007 * 179.72315 * 12 11 10 29 29 H 0.96996 * 120.00295 * 354.60030 * 14 13 12 30 30 H 1.08997 * 109.88016 * 300.42868 * 18 17 15 31 31 H 1.08992 * 109.88547 * 61.44530 * 18 17 15 32 32 H 1.08998 * 110.71885 * 140.55259 * 19 18 17 33 33 H 1.08994 * 110.71974 * 263.83073 * 19 18 17 34 34 H 0.96705 * 113.99828 * 180.02562 * 22 20 19 35 35 H 1.09001 * 110.36645 * 274.75002 * 23 17 15 36 36 H 1.08996 * 110.36580 * 37.07516 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0877 -1.2125 0.0001 9 6 1.3010 -2.4367 0.0016 10 6 2.0087 -3.6517 0.0016 11 6 1.3034 -4.8415 0.0022 12 6 -0.0827 -4.7935 -0.0031 13 6 -0.7277 -3.5550 0.0027 14 7 -2.1193 -3.5048 0.0034 15 6 -2.7508 -2.3198 0.1186 16 8 -2.1091 -1.2873 0.1279 17 7 -4.0939 -2.2793 0.2236 18 6 -4.9886 -3.4461 0.2267 19 6 -6.4333 -2.9152 0.3406 20 6 -6.3092 -1.4568 -0.1742 21 1 -6.3392 -1.4231 -1.2632 22 8 -7.3259 -0.6262 0.3902 23 6 -4.9087 -1.0584 0.3609 24 7 -0.0357 -2.4317 0.0022 25 1 -0.4850 0.8400 0.0004 26 1 3.0886 -3.6558 0.0015 27 1 1.8217 -5.7890 0.0026 28 1 -0.6587 -5.7070 -0.0073 29 1 -2.6341 -4.3227 -0.0793 30 1 -4.8714 -4.0055 -0.7013 31 1 -4.7587 -4.0873 1.0775 32 1 -7.1071 -3.4919 -0.2931 33 1 -6.7693 -2.9309 1.3774 34 1 -7.2890 0.2946 0.0973 35 1 -4.9708 -0.7595 1.4073 36 1 -4.4885 -0.2523 -0.2405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:33 Heat of formation + Delta-G solvation = -5.768487 kcal Electronic energy + Delta-G solvation = -21537.344278 eV Core-core repulsion = 18215.935452 eV Total energy + Delta-G solvation = -3321.408825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.90300 -38.46034 -37.24012 -35.37140 -34.07632 -32.97666 -30.69264 -30.22010 -29.09472 -28.07163 -25.50205 -23.59004 -21.70023 -21.29445 -20.91945 -19.14006 -18.09029 -17.76050 -17.04792 -16.12879 -15.48246 -14.81500 -14.54565 -14.45043 -14.32104 -13.94621 -13.58075 -13.21782 -13.05161 -12.79525 -12.50799 -12.04301 -11.95443 -11.84127 -11.59519 -11.15078 -10.91614 -10.79776 -10.60962 -10.44615 -10.23819 -9.88827 -9.69167 -9.13851 -9.01065 -8.17271 -7.93057 -7.20190 -6.92682 -6.08975 -4.36771 2.84997 3.00022 3.14186 3.19340 3.22963 3.29001 3.98129 4.09043 4.15672 4.38909 4.57187 4.66188 4.87183 4.97782 5.16859 5.33501 5.55563 5.65149 5.84068 5.90659 5.99164 6.07166 6.10872 6.37091 6.52731 6.77613 6.83789 6.87318 7.24375 7.39144 7.43492 7.63983 7.75864 7.83702 8.18653 8.30112 8.64187 8.81097 9.08505 9.56224 10.29054 10.52168 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.005815 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.986231 B = 4813.623476 C = 6345.816929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.650 5.650 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.425 4.425 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.035 4.035 12 C -0.357 4.357 13 C 0.386 3.614 14 N -0.669 5.669 15 C 0.684 3.316 16 O -0.457 6.457 17 N -0.645 5.645 18 C 0.101 3.899 19 C -0.120 4.120 20 C 0.088 3.912 21 H 0.074 0.926 22 O -0.559 6.559 23 C 0.102 3.898 24 N -0.472 5.472 25 H 0.271 0.729 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.382 0.618 35 H 0.067 0.933 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.706 -2.994 -0.707 13.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.268 5.268 2 C -0.173 4.173 3 Si 0.719 3.281 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.456 4.456 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.060 4.060 12 C -0.383 4.383 13 C 0.146 3.854 14 N -0.318 5.318 15 C 0.384 3.616 16 O -0.320 6.320 17 N -0.391 5.391 18 C -0.023 4.023 19 C -0.158 4.158 20 C 0.028 3.972 21 H 0.092 0.908 22 O -0.364 6.364 23 C -0.022 4.022 24 N -0.191 5.191 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.228 0.772 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.901 -1.731 -0.398 13.022 hybrid contribution 0.628 -0.216 -0.295 0.727 sum -12.273 -1.947 -0.694 12.446 Atomic orbital electron populations 1.70359 1.05641 1.27187 1.23656 1.26201 0.95126 1.00573 0.95409 0.86479 0.80934 0.82354 0.78313 1.18593 1.20123 1.20102 1.19615 0.94068 0.89364 1.42519 0.89914 1.18400 0.87110 0.91990 0.87901 1.21622 0.98546 0.93527 1.19181 1.20541 0.93078 0.96529 0.95820 1.20423 0.94763 0.94727 1.28436 1.18345 0.82336 0.90965 0.93727 1.42543 1.05204 1.07781 1.76264 1.15981 0.79599 0.85606 0.80440 1.91393 1.60892 1.30100 1.49640 1.47686 1.04216 1.06759 1.80419 1.21913 0.89093 0.89931 1.01375 1.22570 0.95897 0.94188 1.03153 1.23020 0.86496 0.91067 0.96621 0.90829 1.86481 1.52726 1.24440 1.72756 1.22598 0.89621 0.88542 1.01453 1.68685 1.06933 1.23125 1.20365 0.91739 0.88558 0.88592 0.89165 0.77192 0.91869 0.91645 0.89811 0.89723 0.77029 0.91472 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.43 8.99 55.55 0.50 -17.93 16 2 C 0.06 1.51 5.50 -17.35 -0.10 1.41 16 3 Si 0.89 19.54 29.56 -169.99 -5.02 14.52 16 4 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.43 -11.89 9.14 -37.74 -0.34 -12.24 16 8 H 0.08 2.17 7.85 -52.48 -0.41 1.75 16 9 C 0.27 7.76 6.55 -85.00 -0.56 7.21 16 10 C -0.31 -7.81 9.83 -38.66 -0.38 -8.19 16 11 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 12 C -0.36 -8.18 9.95 -38.89 -0.39 -8.57 16 13 C 0.39 9.69 7.43 -154.98 -1.15 8.54 16 14 N -0.67 -13.91 5.34 -15.79 -0.08 -14.00 16 15 C 0.68 14.76 8.45 -86.91 -0.73 14.03 16 16 O -0.46 -12.09 12.36 5.30 0.07 -12.02 16 17 N -0.65 -10.41 3.33 -176.10 -0.59 -11.00 16 18 C 0.10 1.16 6.16 -3.06 -0.02 1.14 16 19 C -0.12 -1.16 6.68 -24.89 -0.17 -1.33 16 20 C 0.09 0.92 4.44 -24.46 -0.11 0.82 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 22 O -0.56 -5.56 13.47 -35.23 -0.47 -6.03 16 23 C 0.10 1.43 6.65 -2.41 -0.02 1.42 16 24 N -0.47 -13.61 5.74 -10.26 -0.06 -13.67 16 25 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 26 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 27 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 28 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.39 6.47 7.68 -40.82 -0.31 6.16 16 30 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.38 2.28 9.12 45.56 0.42 2.70 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 LS Contribution 305.01 15.07 4.60 4.60 Total: -1.00 -34.83 305.01 -9.09 -43.92 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.67 Total: 8.58 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -4.36 Total: 3.02 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.23 Total: -56.59 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.41 Total: -18.06 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.83 -9.09 -43.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.156 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds