Wall clock time and date at job start Mon Mar 30 2020 20:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99724 * 2 1 4 4 H 1.48499 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47142 * 299.99876 * 3 2 1 6 6 H 1.48498 * 109.47048 * 59.99666 * 3 2 1 7 7 C 1.38810 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00382 * 163.23030 * 7 2 1 9 9 N 1.36943 * 119.99557 * 343.50309 * 7 2 1 10 10 C 1.46962 * 120.59002 * 139.46924 * 9 7 2 11 11 C 1.53813 * 108.40216 * 124.75636 * 10 9 7 12 12 N 1.46963 * 108.57845 * 49.63171 * 11 10 9 13 13 C 1.34776 * 120.59563 * 124.67148 * 12 11 10 14 14 O 1.21393 * 120.00365 * 187.95278 * 13 12 11 15 15 C 1.49099 * 119.99535 * 7.94868 * 13 12 11 16 16 O 1.21598 * 120.00322 * 8.16774 * 15 13 12 17 17 C 1.41534 * 119.99850 * 188.16043 * 15 13 12 18 18 C 1.38802 * 126.31632 * 179.97438 * 17 15 13 19 19 C 1.39388 * 106.92653 * 180.02562 * 18 17 15 20 20 C 1.35879 * 107.91633 * 0.02562 * 19 18 17 21 21 N 1.34881 * 109.08324 * 359.72675 * 20 19 18 22 22 H 0.96998 * 125.64652 * 180.29869 * 21 20 19 23 23 C 1.46973 * 118.81551 * 304.64999 * 12 11 10 24 24 C 1.46967 * 120.59578 * 319.73841 * 9 7 2 25 25 H 0.96992 * 120.00160 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.60494 * 244.53505 * 10 9 7 27 27 H 1.08997 * 109.61090 * 5.04546 * 10 9 7 28 28 H 1.08995 * 109.73774 * 289.84386 * 11 10 9 29 29 H 1.08998 * 109.67706 * 169.38427 * 11 10 9 30 30 H 1.07999 * 126.53781 * 0.02562 * 18 17 15 31 31 H 1.08000 * 126.04417 * 180.02562 * 19 18 17 32 32 H 1.08003 * 125.45664 * 180.02562 * 20 19 18 33 33 H 1.09000 * 109.60297 * 295.48746 * 23 12 11 34 34 H 1.08995 * 109.61190 * 174.97314 * 23 12 11 35 35 H 1.09003 * 109.61084 * 354.95172 * 24 9 7 36 36 H 1.09002 * 109.60684 * 115.28784 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0559 -1.2221 -0.2693 9 7 1.3679 -2.3635 0.3378 10 6 1.6304 -3.6056 -0.4025 11 6 2.0609 -4.6878 0.6021 12 7 1.0922 -4.7130 1.7070 13 6 0.4599 -5.8560 2.0390 14 8 -0.4404 -5.8373 2.8531 15 6 0.8662 -7.1435 1.4062 16 8 1.8594 -7.1902 0.7062 17 6 0.0958 -8.3114 1.6204 18 6 0.3515 -9.5719 1.0986 19 6 -0.6553 -10.4158 1.5645 20 6 -1.4907 -9.6796 2.3433 21 7 -1.0441 -8.4077 2.3894 22 1 -1.4578 -7.6809 2.8807 23 6 0.8255 -3.4696 2.4438 24 6 0.3992 -2.3887 1.4428 25 1 -0.4850 0.8400 -0.0004 26 1 0.7242 -3.9219 -0.9191 27 1 2.4278 -3.4383 -1.1265 28 1 3.0526 -4.4561 0.9904 29 1 2.0790 -5.6598 0.1092 30 1 1.1737 -9.8466 0.4545 31 1 -0.7541 -11.4687 1.3453 32 1 -2.3686 -10.0542 2.8487 33 1 1.7294 -3.1512 2.9631 34 1 0.0255 -3.6362 3.1651 35 1 0.3834 -1.4176 1.9377 36 1 -0.5932 -2.6174 1.0541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905137606.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:44 Heat of formation + Delta-G solvation = 5.747102 kcal Electronic energy + Delta-G solvation = -21507.798991 eV Core-core repulsion = 18186.889519 eV Total energy + Delta-G solvation = -3320.909472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.62998 -41.28412 -39.53967 -38.58052 -35.68695 -33.17005 -32.23432 -31.99898 -30.99838 -29.00670 -26.74759 -25.20355 -24.60862 -22.86662 -21.80112 -21.11657 -20.79988 -19.09235 -18.69380 -17.75059 -17.34707 -17.04838 -16.73481 -15.81657 -15.64707 -15.56679 -15.46071 -15.26624 -14.99058 -14.69374 -14.49056 -14.04944 -13.74734 -13.38275 -13.27435 -13.23091 -12.83744 -12.66774 -12.48023 -12.21042 -12.12807 -12.01513 -11.70178 -10.66908 -10.32734 -10.03961 -10.01295 -9.29532 -8.59863 -7.93287 -5.57074 -0.57353 1.06830 1.44598 1.47019 1.56703 1.59122 1.85822 2.26723 2.32900 2.46025 2.85173 3.19453 3.54939 3.88055 4.13720 4.16758 4.28050 4.32536 4.36541 4.44548 4.51222 4.55937 4.66698 4.77712 4.94412 5.07384 5.11738 5.22568 5.27678 5.38578 5.61585 5.65819 5.89168 6.04952 6.22789 6.37188 6.50281 6.71045 7.05685 7.68467 8.31178 9.08967 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.045045 B = 0.004001 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.452299 B = 6996.342501 C = 7307.496613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.034 4.034 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.279 4.279 8 H 0.065 0.935 9 N -0.606 5.606 10 C 0.128 3.872 11 C 0.066 3.934 12 N -0.568 5.568 13 C 0.472 3.528 14 O -0.555 6.555 15 C 0.418 3.582 16 O -0.440 6.440 17 C -0.131 4.131 18 C -0.083 4.083 19 C -0.230 4.230 20 C 0.067 3.933 21 N -0.516 5.516 22 H 0.431 0.569 23 C 0.095 3.905 24 C 0.175 3.825 25 H 0.253 0.747 26 H 0.009 0.991 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.175 0.825 32 H 0.217 0.783 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.057 0.943 36 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.239 -19.556 5.185 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.231 4.231 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.409 4.409 8 H 0.083 0.917 9 N -0.329 5.329 10 C 0.002 3.998 11 C -0.056 4.056 12 N -0.299 5.299 13 C 0.258 3.742 14 O -0.437 6.437 15 C 0.299 3.701 16 O -0.318 6.318 17 C -0.241 4.241 18 C -0.110 4.110 19 C -0.253 4.253 20 C -0.075 4.075 21 N -0.113 5.113 22 H 0.273 0.727 23 C -0.029 4.029 24 C 0.048 3.952 25 H 0.062 0.938 26 H 0.027 0.973 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.156 0.844 30 H 0.175 0.825 31 H 0.193 0.807 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -1.289 -19.184 5.298 19.944 hybrid contribution -0.115 1.845 0.091 1.851 sum -1.404 -17.339 5.389 18.211 Atomic orbital electron populations 1.70191 1.07138 1.26403 1.53391 1.26167 0.95893 1.02194 0.98882 0.85205 0.78912 0.79331 0.76908 1.18706 1.21704 1.21367 1.19423 0.92532 0.85395 1.43575 0.91706 1.44161 1.49064 1.05918 1.33806 1.21569 0.98178 0.86571 0.93462 1.23412 0.91142 1.03528 0.87542 1.48189 1.40594 1.08383 1.32755 1.21199 0.82855 0.86509 0.83663 1.90507 1.30043 1.86600 1.36503 1.19883 0.84274 0.87251 0.78683 1.90389 1.24266 1.85261 1.31875 1.19442 0.96874 0.96669 1.11080 1.21974 1.00078 0.90095 0.98874 1.21385 0.97243 1.01651 1.04972 1.23112 1.01206 0.82662 1.00534 1.42530 1.20273 1.11980 1.36525 0.72652 1.22355 1.01892 0.83676 0.94953 1.20780 0.90479 0.95889 0.88046 0.93779 0.97333 0.90452 0.90778 0.84406 0.82466 0.80713 0.76670 0.90488 0.89139 0.92445 0.98393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 12.09 21.65 0.26 -54.58 16 2 C -0.03 -1.86 4.87 84.86 0.41 -1.45 16 3 Si 0.97 43.98 29.59 68.60 2.03 46.01 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.28 -15.23 9.42 84.03 0.79 -14.44 16 8 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 9 N -0.61 -30.76 2.88 -697.34 -2.01 -32.76 16 10 C 0.13 5.52 6.70 86.57 0.58 6.10 16 11 C 0.07 2.40 6.20 86.57 0.54 2.94 16 12 N -0.57 -21.33 2.95 -819.14 -2.41 -23.74 16 13 C 0.47 16.46 7.69 87.16 0.67 17.13 16 14 O -0.56 -19.86 13.90 -3.38 -0.05 -19.91 16 15 C 0.42 12.84 6.85 26.00 0.18 13.02 16 16 O -0.44 -14.01 13.64 -4.02 -0.05 -14.06 16 17 C -0.13 -3.38 6.78 39.15 0.27 -3.11 16 18 C -0.08 -1.75 10.61 22.68 0.24 -1.50 16 19 C -0.23 -3.44 10.81 22.00 0.24 -3.21 16 20 C 0.07 0.93 11.87 83.68 0.99 1.92 16 21 N -0.52 -10.92 5.80 -187.29 -1.09 -12.00 16 22 H 0.43 9.45 6.75 -92.71 -0.63 8.82 16 23 C 0.09 3.75 6.60 86.41 0.57 4.32 16 24 C 0.17 8.51 5.50 86.41 0.48 8.98 16 25 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 27 H 0.08 3.17 7.93 -2.39 -0.02 3.15 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.14 4.66 4.22 -53.75 -0.23 4.44 16 30 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.22 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.09 3.42 7.00 -2.39 -0.02 3.40 16 35 H 0.06 3.03 6.90 -2.39 -0.02 3.01 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 Total: -1.00 -67.55 301.78 2.91 -64.63 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.27 Total: 15.71 kcal Atomic # 6 Polarization: 24.75 SS G_CDS: 5.95 Total: 30.70 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.24 Total: -123.09 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.10 Total: -33.97 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.55 2.91 -64.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905137606.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.381 kcal (2) G-P(sol) polarization free energy of solvation -67.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds