Wall clock time and date at job start Mon Mar 30 2020 20:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00230 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48498 * 109.47011 * 149.99962 * 3 2 1 7 7 C 1.37876 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00449 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47456 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00195 * 179.97438 * 11 10 9 13 13 O 1.21563 * 119.99934 * 0.02562 * 12 11 10 14 14 C 1.47770 * 119.99858 * 180.27937 * 12 11 10 15 15 C 1.41174 * 126.16748 * 179.72785 * 14 12 11 16 16 C 1.36850 * 104.89325 * 179.97438 * 15 14 12 17 17 N 1.37827 * 107.45084 * 0.02562 * 16 15 14 18 18 N 1.28078 * 109.00271 * 359.69473 * 17 16 15 19 19 C 1.46761 * 123.00108 * 179.97438 * 17 16 15 20 20 C 1.52971 * 109.78626 * 338.47325 * 19 17 16 21 21 C 1.53287 * 110.60075 * 53.54827 * 20 19 17 22 22 C 1.46827 * 130.33476 * 180.02562 * 16 15 14 23 23 O 1.21345 * 122.51912 * 349.50075 * 22 16 15 24 24 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47031 * 60.00617 * 9 7 2 26 26 H 1.09003 * 109.47848 * 300.00617 * 9 7 2 27 27 H 1.08998 * 109.47059 * 60.00333 * 10 9 7 28 28 H 1.08997 * 109.47280 * 300.00403 * 10 9 7 29 29 H 0.97000 * 120.00069 * 0.02562 * 11 10 9 30 30 H 1.07995 * 127.55265 * 0.03609 * 15 14 12 31 31 H 1.09011 * 109.41881 * 218.38249 * 19 17 16 32 32 H 1.08995 * 109.37226 * 98.53910 * 19 17 16 33 33 H 1.09000 * 109.25351 * 293.25782 * 20 19 17 34 34 H 1.09000 * 109.22046 * 173.81631 * 20 19 17 35 35 H 1.09009 * 109.77649 * 176.57067 * 21 20 19 36 36 H 1.08998 * 109.78149 * 55.76275 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1603 -3.8038 -0.0003 13 8 5.5525 -4.8566 -0.0003 14 6 7.6380 -3.8038 0.0060 15 6 8.4711 -4.9435 0.0128 16 6 9.7464 -4.4469 0.0162 17 7 9.6545 -3.0717 0.0122 18 7 8.4184 -2.7364 0.0002 19 6 10.8292 -2.1921 0.0147 20 6 12.0441 -2.9521 0.5500 21 6 12.2490 -4.2573 -0.2272 22 6 11.0380 -5.1450 0.0229 23 8 11.1328 -6.3398 0.2129 24 1 -0.4851 0.8400 0.0004 25 1 3.8751 -0.6805 0.8890 26 1 3.8745 -0.6800 -0.8911 27 1 3.6578 -3.1506 -0.8907 28 1 3.6584 -3.1502 0.8892 29 1 5.9715 -1.7966 -0.0006 30 1 8.1684 -5.9801 0.0139 31 1 10.6336 -1.3280 0.6500 32 1 11.0314 -1.8558 -1.0022 33 1 11.8883 -3.1821 1.6040 34 1 12.9320 -2.3285 0.4457 35 1 13.1517 -4.7577 0.1237 36 1 12.3359 -4.0427 -1.2923 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907322484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:46 Heat of formation + Delta-G solvation = -30.787249 kcal Electronic energy + Delta-G solvation = -20389.715945 eV Core-core repulsion = 17067.222225 eV Total energy + Delta-G solvation = -3322.493720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.88954 -40.64282 -40.11924 -36.91830 -36.69316 -34.82498 -33.10457 -32.41536 -31.26096 -29.25051 -27.22643 -24.90931 -23.99319 -23.32663 -22.59167 -21.57680 -20.03806 -18.97834 -18.64779 -17.93824 -17.39424 -16.85701 -16.53828 -16.37001 -16.25852 -16.00730 -15.77240 -15.36954 -15.02497 -14.91462 -14.58697 -14.37446 -13.71619 -13.36780 -13.27864 -13.05469 -12.47948 -12.30375 -12.23228 -12.17876 -12.10613 -11.76398 -11.54915 -11.29427 -11.01923 -10.78593 -10.51637 -10.38597 -10.03958 -8.29647 -6.37030 -0.24721 0.38860 1.18921 1.39445 1.42157 1.53702 1.56122 2.08197 2.20747 2.37505 2.75118 2.96796 3.05235 3.54917 3.61215 3.73201 4.03167 4.16951 4.20469 4.31670 4.36232 4.40846 4.50970 4.55738 4.73590 4.86946 4.93089 4.99226 5.08616 5.09740 5.35900 5.38916 5.45700 5.61727 6.18094 6.21940 6.38931 6.66408 6.71740 7.09176 7.27495 8.87128 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.032035 B = 0.003322 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.844719 B = 8427.308480 C = 9247.059362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.238 1.238 7 C -0.539 4.539 8 H 0.031 0.969 9 C -0.012 4.012 10 C 0.143 3.857 11 N -0.701 5.701 12 C 0.597 3.403 13 O -0.576 6.576 14 C -0.050 4.050 15 C -0.115 4.115 16 C -0.089 4.089 17 N -0.239 5.239 18 N -0.222 5.222 19 C 0.098 3.902 20 C -0.122 4.122 21 C -0.155 4.155 22 C 0.430 3.570 23 O -0.474 6.474 24 H 0.268 0.732 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.415 0.585 30 H 0.164 0.836 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.155 0.845 35 H 0.125 0.875 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.230 -0.100 -0.504 34.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.161 1.161 7 C -0.577 4.577 8 H 0.049 0.951 9 C -0.050 4.050 10 C 0.020 3.980 11 N -0.352 5.352 12 C 0.382 3.618 13 O -0.454 6.454 14 C -0.205 4.205 15 C -0.143 4.143 16 C -0.211 4.211 17 N -0.035 5.035 18 N -0.064 5.064 19 C -0.019 4.019 20 C -0.160 4.160 21 C -0.193 4.193 22 C 0.307 3.693 23 O -0.347 6.347 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.252 0.748 30 H 0.181 0.819 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.173 0.827 35 H 0.143 0.857 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 33.759 -0.132 -0.402 33.761 hybrid contribution -0.865 -0.205 0.007 0.889 sum 32.894 -0.337 -0.395 32.898 Atomic orbital electron populations 1.70072 1.08549 1.28459 1.51944 1.26069 0.95691 1.03841 0.93642 0.85546 0.79632 0.77383 0.79387 1.18894 1.21108 1.16132 1.21235 0.91389 0.93519 1.51605 0.95071 1.19649 0.94567 0.92658 0.98117 1.21166 0.77383 0.98890 1.00586 1.45917 1.07770 1.08529 1.72958 1.17185 0.84777 0.83810 0.76032 1.90768 1.69364 1.32636 1.52629 1.21679 0.93480 0.90871 1.14437 1.22032 0.90597 1.00204 1.01451 1.22583 0.97570 0.85850 1.15136 1.47012 1.04894 1.05369 1.46270 1.73201 0.90869 1.26600 1.15771 1.22947 0.78871 0.92682 1.07360 1.21983 0.98195 0.95579 1.00257 1.22580 0.95725 0.95630 1.05319 1.22616 0.88486 0.88047 0.70160 1.90625 1.88177 1.17902 1.38012 0.92284 0.94517 0.94605 0.93082 0.93145 0.74846 0.81852 0.85287 0.85075 0.90517 0.82712 0.85717 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.00 0.27 5.47 84.65 0.46 0.74 16 3 Si 0.96 42.71 27.47 68.60 1.88 44.59 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 16 7 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 8 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 9 C -0.01 -0.56 4.15 29.85 0.12 -0.43 16 10 C 0.14 6.13 5.61 86.38 0.48 6.62 16 11 N -0.70 -25.09 5.55 -466.06 -2.59 -27.68 16 12 C 0.60 22.24 7.83 86.76 0.68 22.92 16 13 O -0.58 -25.68 16.91 -3.91 -0.07 -25.74 16 14 C -0.05 -1.53 7.10 42.33 0.30 -1.23 16 15 C -0.11 -3.21 10.85 22.67 0.25 -2.96 16 16 C -0.09 -1.84 6.73 40.12 0.27 -1.57 16 17 N -0.24 -4.02 3.81 -334.81 -1.28 -5.29 16 18 N -0.22 -5.37 11.71 -48.14 -0.56 -5.94 16 19 C 0.10 0.37 7.16 86.32 0.62 0.98 16 20 C -0.12 0.08 5.85 30.68 0.18 0.26 16 21 C -0.16 -0.52 6.23 30.43 0.19 -0.33 16 22 C 0.43 7.00 7.10 28.42 0.20 7.21 16 23 O -0.47 -11.53 17.97 -3.23 -0.06 -11.58 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.04 1.59 7.20 -2.38 -0.02 1.58 16 26 H 0.04 1.53 7.57 -2.39 -0.02 1.51 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.41 12.61 8.18 -92.71 -0.76 11.85 16 30 H 0.16 4.70 8.06 -2.91 -0.02 4.67 16 31 H 0.13 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.08 0.13 8.14 -2.39 -0.02 0.12 16 34 H 0.16 -1.30 8.14 -2.39 -0.02 -1.32 16 35 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 36 H 0.13 -0.09 8.14 -2.39 -0.02 -0.11 16 Total: -1.00 -83.21 314.33 1.93 -81.27 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.30 Total: 8.58 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 4.00 Total: 1.21 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -4.13 Total: -98.33 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.12 Total: -37.33 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.59 kcal Total: -83.21 1.93 -81.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907322484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.487 kcal (2) G-P(sol) polarization free energy of solvation -83.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds