Wall clock time and date at job start Mon Mar 30 2020 20:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34237 * 117.00037 * 2 1 4 4 O 1.20822 * 119.99545 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99983 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.58019 * 285.50570 * 5 3 2 7 7 C 1.51734 * 109.58453 * 45.91453 * 5 3 2 8 8 C 1.37564 * 120.92831 * 235.71519 * 7 5 3 9 9 C 1.38470 * 119.63272 * 177.62474 * 8 7 5 10 10 C 1.38292 * 119.88676 * 359.74791 * 9 8 7 11 11 C 1.38089 * 120.40646 * 1.14564 * 10 9 8 12 12 C 1.38724 * 118.10916 * 55.13130 * 7 5 3 13 13 O 1.35386 * 120.73764 * 4.17329 * 12 7 5 14 14 C 1.43313 * 115.74803 * 71.08367 * 13 12 7 15 15 C 1.52189 * 110.05391 * 271.02496 * 14 13 12 16 16 N 1.46361 * 111.17484 * 60.87394 * 15 14 13 17 17 C 1.36936 * 119.72012 * 115.94041 * 16 15 14 18 18 H 1.08003 * 119.99637 * 152.15675 * 17 16 15 19 19 C 1.38815 * 120.00260 * 332.16275 * 17 16 15 20 20 N 1.31613 * 120.00318 * 144.26494 * 19 17 16 21 21 Si 1.86800 * 119.99475 * 324.26390 * 19 17 16 22 22 H 1.48496 * 109.47277 * 87.18110 * 21 19 17 23 23 H 1.48502 * 109.46942 * 207.17803 * 21 19 17 24 24 H 1.48503 * 109.47257 * 327.17515 * 21 19 17 25 25 H 1.09002 * 109.47113 * 300.00237 * 1 2 3 26 26 H 1.09003 * 109.47140 * 59.99916 * 1 2 3 27 27 H 1.08998 * 109.47320 * 179.97438 * 1 2 3 28 28 H 1.08004 * 120.19511 * 357.61775 * 8 7 5 29 29 H 1.08003 * 120.05842 * 179.73223 * 9 8 7 30 30 H 1.07999 * 119.80094 * 181.15964 * 10 9 8 31 31 H 1.08002 * 120.02827 * 179.97438 * 11 10 9 32 32 H 1.09005 * 109.37299 * 150.84860 * 14 13 12 33 33 H 1.08998 * 109.37918 * 31.20730 * 14 13 12 34 34 H 1.09004 * 109.14023 * 300.43951 * 15 14 13 35 35 H 1.09009 * 109.09553 * 181.28023 * 15 14 13 36 36 H 0.96996 * 120.00060 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9458 1.0196 0.9888 7 6 4.1258 0.3085 -1.0279 8 6 5.0408 -0.6538 -0.6685 9 6 5.4967 -1.5534 -1.6174 10 6 5.0267 -1.4825 -2.9160 11 6 4.1221 -0.5045 -3.2795 12 6 3.6791 0.4151 -2.3369 13 8 2.8342 1.4083 -2.7010 14 6 3.4012 2.7238 -2.7433 15 6 3.2730 3.3915 -1.3817 16 7 3.9870 2.6346 -0.3524 17 6 5.0573 3.2009 0.2870 18 1 5.3071 2.8984 1.2932 19 6 5.8211 4.1639 -0.3581 20 7 6.3276 5.1685 0.3250 21 14 6.1301 4.0340 -2.1958 22 1 5.0207 4.6916 -2.9320 23 1 7.4122 4.7043 -2.5307 24 1 6.2032 2.6029 -2.5855 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 5.4018 -0.7075 0.3480 29 1 6.2184 -2.3089 -1.3438 30 1 5.3690 -2.1965 -3.6505 31 1 3.7594 -0.4545 -4.2955 32 1 2.8759 3.3202 -3.4894 33 1 4.4547 2.6550 -3.0145 34 1 2.2186 3.4543 -1.1123 35 1 3.6880 4.3980 -1.4376 36 1 6.8617 5.8411 -0.1257 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932744344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:00 Heat of formation + Delta-G solvation = -59.408032 kcal Electronic energy + Delta-G solvation = -23109.236052 eV Core-core repulsion = 19753.208491 eV Total energy + Delta-G solvation = -3356.027562 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14321 -40.70757 -38.59504 -37.83014 -36.90477 -34.23245 -33.09913 -31.57001 -29.77453 -29.27298 -27.71995 -25.62419 -23.89871 -23.27242 -22.62670 -21.35825 -19.52590 -19.19030 -18.28547 -17.88417 -17.46693 -17.13369 -16.72750 -16.54620 -16.07010 -15.68712 -15.22536 -15.03219 -14.81145 -14.62187 -14.42293 -14.08408 -13.52240 -13.38861 -13.10189 -13.02041 -12.81674 -12.70469 -12.62619 -12.30623 -11.96699 -11.68500 -11.54043 -11.29931 -11.02495 -10.64340 -9.80121 -9.42225 -9.18089 -8.34679 -5.55056 0.24235 0.44027 1.17778 1.20977 1.34546 1.41373 1.75581 2.31652 2.41728 2.81956 2.95315 3.32564 3.65501 3.85588 3.95747 4.05118 4.18150 4.24971 4.28208 4.31404 4.33989 4.36062 4.45000 4.59676 4.65592 4.69206 4.84828 5.00180 5.07812 5.42933 5.47727 5.55724 5.60320 5.71099 5.87188 5.97961 6.47945 6.64353 6.86737 7.44240 7.81708 8.82753 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.016010 B = 0.010177 C = 0.007984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.433696 B = 2750.535751 C = 3506.337318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.520 6.520 5 C 0.215 3.785 6 H 0.117 0.883 7 C -0.130 4.130 8 C -0.097 4.097 9 C -0.122 4.122 10 C -0.105 4.105 11 C -0.147 4.147 12 C 0.073 3.927 13 O -0.337 6.337 14 C 0.031 3.969 15 C 0.089 3.911 16 N -0.582 5.582 17 C -0.272 4.272 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.916 5.916 21 Si 0.906 3.094 22 H -0.264 1.264 23 H -0.304 1.304 24 H -0.271 1.271 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.135 0.865 28 H 0.142 0.858 29 H 0.161 0.839 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -15.056 -6.140 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.409 6.409 5 C 0.106 3.894 6 H 0.135 0.865 7 C -0.134 4.134 8 C -0.116 4.116 9 C -0.140 4.140 10 C -0.123 4.123 11 C -0.165 4.165 12 C 0.029 3.971 13 O -0.254 6.254 14 C -0.045 4.045 15 C -0.036 4.036 16 N -0.303 5.303 17 C -0.400 4.400 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.557 5.557 21 Si 0.735 3.265 22 H -0.190 1.190 23 H -0.232 1.232 24 H -0.198 1.198 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.178 0.822 30 H 0.179 0.821 31 H 0.157 0.843 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.325 -14.579 -6.144 17.038 hybrid contribution 0.376 0.843 -0.585 1.093 sum -5.949 -13.736 -6.729 16.412 Atomic orbital electron populations 1.23490 0.75188 1.05509 1.02082 1.86512 1.24703 1.32432 1.83705 1.24272 0.92069 0.81379 0.71143 1.90483 1.67332 1.36980 1.46072 1.19234 0.85869 0.85253 0.99006 0.86546 1.20932 1.00113 0.97775 0.94533 1.21078 0.95386 0.93664 1.01434 1.21587 1.00285 0.99251 0.92864 1.21375 0.95862 0.97770 0.97333 1.21499 0.98526 0.97307 0.99191 1.18891 0.94069 0.91618 0.92478 1.85994 1.36449 1.15289 1.87630 1.23771 0.98606 0.82668 0.99441 1.21796 0.98960 0.95080 0.87774 1.43929 1.32315 1.10309 1.43758 1.18676 1.06161 1.19138 0.96066 0.91839 1.25565 0.97854 0.95718 1.00473 1.70130 1.36849 1.10089 1.38663 0.86677 0.77144 0.77894 0.84823 1.18954 1.23186 1.19756 0.92013 0.92786 0.84734 0.84046 0.82167 0.82138 0.84333 0.86414 0.93484 0.90585 0.91465 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.36 -12.11 10.21 -51.48 -0.53 -12.64 16 3 C 0.47 19.00 5.70 71.23 0.41 19.41 16 4 O -0.52 -23.48 13.34 21.98 0.29 -23.18 16 5 C 0.21 9.06 2.95 43.81 0.13 9.19 16 6 H 0.12 4.68 7.78 -2.39 -0.02 4.66 16 7 C -0.13 -4.95 4.77 -19.58 -0.09 -5.04 16 8 C -0.10 -3.02 9.72 22.17 0.22 -2.80 16 9 C -0.12 -3.02 10.07 22.34 0.22 -2.80 16 10 C -0.11 -2.57 10.02 22.25 0.22 -2.35 16 11 C -0.15 -4.46 10.00 22.40 0.22 -4.24 16 12 C 0.07 2.77 5.31 22.55 0.12 2.89 16 13 O -0.34 -13.58 8.95 -86.78 -0.78 -14.36 16 14 C 0.03 1.28 5.57 71.71 0.40 1.68 16 15 C 0.09 4.18 4.63 86.14 0.40 4.58 16 16 N -0.58 -28.65 2.21 -686.16 -1.52 -30.16 16 17 C -0.27 -15.22 9.80 84.03 0.82 -14.39 16 18 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 19 C 0.00 0.18 4.78 84.86 0.41 0.59 16 20 N -0.92 -55.32 13.97 21.65 0.30 -55.02 16 21 Si 0.91 44.55 23.24 68.60 1.59 46.14 16 22 H -0.26 -12.05 6.12 99.48 0.61 -11.44 16 23 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 24 H -0.27 -13.30 6.44 99.48 0.64 -12.66 16 25 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 26 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 27 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.14 3.87 8.02 -2.91 -0.02 3.85 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.12 4.14 8.14 -2.38 -0.02 4.12 16 33 H 0.05 2.06 3.65 -2.39 -0.01 2.06 16 34 H 0.08 3.67 5.20 -2.38 -0.01 3.66 16 35 H 0.07 3.36 5.23 -2.38 -0.01 3.35 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -70.08 288.41 4.98 -65.10 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.94 Total: 15.44 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.67 Total: 8.68 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.21 Total: -85.18 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.01 Total: -50.18 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.59 Total: 46.14 kcal Total: -70.08 4.98 -65.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932744344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.692 kcal (2) G-P(sol) polarization free energy of solvation -70.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds