Wall clock time and date at job start Mon Mar 30 2020 20:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86805 * 119.99873 * 2 1 4 4 H 1.48495 * 109.47169 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46757 * 60.00319 * 3 2 1 6 6 H 1.48496 * 109.47225 * 300.00393 * 3 2 1 7 7 C 1.38807 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00488 * 155.60528 * 7 2 1 9 9 N 1.36940 * 120.00110 * 335.61148 * 7 2 1 10 10 C 1.48141 * 127.84124 * 158.92346 * 9 7 2 11 11 C 1.54387 * 104.61828 * 140.41747 * 10 9 7 12 12 H 1.08998 * 117.61980 * 244.78552 * 11 10 9 13 13 C 1.54288 * 104.95807 * 23.86913 * 11 10 9 14 14 H 1.09004 * 121.81182 * 222.17563 * 13 11 10 15 15 C 1.48142 * 127.83440 * 338.61056 * 9 7 2 16 16 C 1.52997 * 59.72074 * 114.13877 * 13 11 10 17 17 H 1.08995 * 117.44608 * 252.34497 * 16 13 11 18 18 N 1.46506 * 117.44111 * 107.65103 * 16 13 11 19 19 C 1.34774 * 120.00063 * 135.76376 * 18 16 13 20 20 O 1.21281 * 120.00061 * 359.97438 * 19 18 16 21 21 C 1.50697 * 120.00098 * 179.97438 * 19 18 16 22 22 C 1.50695 * 109.47478 * 179.97438 * 21 19 18 23 23 C 1.41382 * 128.00921 * 269.67697 * 22 21 19 24 24 N 1.30177 * 106.39715 * 179.89032 * 23 22 21 25 25 O 1.20927 * 111.60171 * 0.39707 * 24 23 22 26 26 C 1.34041 * 111.56941 * 359.73996 * 25 24 23 27 27 H 0.96996 * 119.99488 * 174.47292 * 1 2 3 28 28 H 1.08999 * 110.40795 * 259.20345 * 10 9 7 29 29 H 1.09000 * 110.40734 * 21.63298 * 10 9 7 30 30 H 1.09001 * 110.40815 * 338.36529 * 15 9 7 31 31 H 1.09002 * 110.41059 * 100.80042 * 15 9 7 32 32 H 0.97000 * 119.99937 * 315.75648 * 18 16 13 33 33 H 1.09004 * 109.47231 * 299.99695 * 21 19 18 34 34 H 1.08999 * 109.47391 * 59.99220 * 21 19 18 35 35 H 1.07997 * 126.80403 * 0.03617 * 23 22 21 36 36 H 1.07996 * 126.77510 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 1.2125 6 1 1.8914 2.3965 -1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0180 -1.2436 -0.3868 9 7 1.4174 -2.3354 0.4886 10 6 1.7767 -3.7441 0.2045 11 6 1.6238 -4.4664 1.5604 12 1 2.5228 -4.8817 2.0158 13 6 0.6309 -3.6003 2.3632 14 1 0.7829 -3.3824 3.4204 15 6 0.2751 -2.4306 1.4271 16 6 0.2458 -5.0170 1.9328 17 1 -0.4881 -5.1171 1.1332 18 7 0.1889 -6.0468 2.9734 19 6 -0.8424 -6.9137 3.0078 20 8 -1.7237 -6.8411 2.1777 21 6 -0.9007 -7.9733 4.0778 22 6 -2.1441 -8.8046 3.8944 23 6 -3.4249 -8.5906 4.4538 24 7 -4.1820 -9.5558 4.0183 25 8 -3.5698 -10.3129 3.3011 26 6 -2.2920 -9.9333 3.1603 27 1 -0.4849 -0.8361 -0.0809 28 1 1.0945 -4.1693 -0.5317 29 1 2.8062 -3.8103 -0.1474 30 1 0.1730 -1.5068 1.9966 31 1 -0.6453 -2.6475 0.8849 32 1 0.8935 -6.1047 3.6375 33 1 -0.0213 -8.6131 4.0039 34 1 -0.9229 -7.4984 5.0587 35 1 -3.7177 -7.7846 5.1102 36 1 -1.5308 -10.4292 2.5763 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961566551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:07 Heat of formation + Delta-G solvation = 61.131965 kcal Electronic energy + Delta-G solvation = -20513.481467 eV Core-core repulsion = 17194.973663 eV Total energy + Delta-G solvation = -3318.507804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.88356 -41.21815 -39.95123 -36.35363 -35.52271 -34.47928 -33.11499 -32.08171 -29.76593 -29.17779 -27.32550 -24.26409 -23.74618 -22.74951 -22.00081 -21.31813 -20.99646 -19.53956 -18.88288 -18.59826 -17.89287 -17.76878 -16.34374 -16.25857 -15.86505 -15.70556 -15.39388 -15.12639 -14.87920 -14.32086 -14.00483 -13.85033 -13.66749 -13.32734 -13.05157 -12.63164 -12.57898 -12.32686 -12.15789 -11.88228 -11.81891 -11.66910 -11.39463 -11.08077 -10.85955 -10.64466 -10.32486 -9.78884 -9.12156 -8.40625 -5.43449 0.60033 1.23115 1.53897 1.57158 1.66087 1.81979 2.05041 2.44036 2.61398 2.73710 3.16941 3.37186 3.45106 3.68966 3.75070 3.80591 3.81465 4.01070 4.01957 4.23482 4.27712 4.32476 4.61344 4.69227 4.76687 4.77832 4.82833 4.85590 4.97075 5.14199 5.17409 5.21009 5.47114 5.61057 6.22864 6.53896 6.77472 7.25306 7.31760 7.61330 8.28383 8.95188 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.047452 B = 0.002965 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.926090 B = 9440.678268 C = 9656.478631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.082 4.082 3 Si 1.128 2.872 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.622 5.622 10 C 0.145 3.855 11 C -0.155 4.155 12 H 0.148 0.852 13 C -0.184 4.184 14 H 0.131 0.869 15 C 0.169 3.831 16 C 0.125 3.875 17 H 0.100 0.900 18 N -0.680 5.680 19 C 0.512 3.488 20 O -0.586 6.586 21 C -0.047 4.047 22 C -0.202 4.202 23 C -0.008 4.008 24 N -0.404 5.404 25 O 0.081 5.919 26 C -0.037 4.037 27 H 0.252 0.748 28 H 0.015 0.985 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.000 1.000 32 H 0.423 0.577 33 H 0.152 0.848 34 H 0.140 0.860 35 H 0.202 0.798 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.617 -20.408 12.620 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.278 4.278 3 Si 0.951 3.049 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.467 4.467 8 H 0.084 0.916 9 N -0.348 5.348 10 C 0.019 3.981 11 C -0.175 4.175 12 H 0.165 0.835 13 C -0.205 4.205 14 H 0.149 0.851 15 C 0.043 3.957 16 C 0.017 3.983 17 H 0.118 0.882 18 N -0.331 5.331 19 C 0.301 3.699 20 O -0.465 6.465 21 C -0.087 4.087 22 C -0.206 4.206 23 C -0.186 4.186 24 N -0.111 5.111 25 O 0.019 5.981 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.219 0.781 36 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 1.626 -18.967 12.210 22.615 hybrid contribution 0.662 -0.805 -0.249 1.072 sum 2.288 -19.772 11.961 23.221 Atomic orbital electron populations 1.70837 1.07726 1.29364 1.51199 1.27412 0.96625 1.05007 0.98711 0.82705 0.74231 0.71252 0.76693 1.19203 1.21291 1.21770 1.20105 0.97252 0.87997 1.41368 0.91619 1.45579 1.37485 1.01449 1.50260 1.21289 0.98756 0.84259 0.93750 1.24207 0.94170 1.01839 0.97315 0.83473 1.24141 1.06034 0.90674 0.99693 0.85135 1.20817 0.89462 0.95308 0.90154 1.21275 0.97455 0.86549 0.93010 0.88171 1.45139 1.26099 1.30751 1.31141 1.21393 0.80269 0.82170 0.86053 1.90755 1.39639 1.73571 1.42554 1.19972 0.95826 0.94245 0.98634 1.21054 0.97001 0.98914 1.03647 1.25384 0.91067 0.99473 1.02715 1.73856 1.22256 1.05544 1.09410 1.84763 1.20641 1.42634 1.50038 1.26579 0.87288 0.97480 1.00445 0.93790 0.96743 0.91806 0.94688 0.98229 0.73837 0.83014 0.84215 0.78137 0.73062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 12.82 21.65 0.28 -59.66 16 2 C -0.08 -4.79 5.12 84.86 0.43 -4.36 16 3 Si 1.13 51.33 29.98 68.60 2.06 53.38 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.34 -19.39 10.19 84.03 0.86 -18.53 16 8 H 0.07 3.67 7.94 -2.91 -0.02 3.65 16 9 N -0.62 -32.23 3.23 -688.97 -2.22 -34.45 16 10 C 0.14 5.94 7.04 86.53 0.61 6.55 16 11 C -0.15 -4.72 7.06 -9.89 -0.07 -4.79 16 12 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 13 C -0.18 -6.34 7.04 -10.03 -0.07 -6.41 16 14 H 0.13 3.86 8.14 -2.38 -0.02 3.84 16 15 C 0.17 8.15 4.98 86.40 0.43 8.58 16 16 C 0.12 3.68 5.98 44.99 0.27 3.95 16 17 H 0.10 3.70 7.40 -2.39 -0.02 3.68 16 18 N -0.68 -12.82 5.56 -442.54 -2.46 -15.29 16 19 C 0.51 10.55 7.82 87.66 0.69 11.23 16 20 O -0.59 -19.25 15.60 -3.03 -0.05 -19.30 16 21 C -0.05 -0.45 6.28 29.10 0.18 -0.26 16 22 C -0.20 -3.20 4.82 -19.73 -0.10 -3.30 16 23 C -0.01 -0.16 12.16 85.71 1.04 0.88 16 24 N -0.40 -9.90 12.07 -59.26 -0.72 -10.61 16 25 O 0.08 1.71 11.20 71.62 0.80 2.51 16 26 C -0.04 -0.53 12.26 67.18 0.82 0.30 16 27 H 0.25 16.37 6.41 -92.71 -0.59 15.77 16 28 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 30 H 0.03 1.88 7.47 -2.39 -0.02 1.86 16 31 H 0.00 0.00 7.66 -2.39 -0.02 -0.02 16 32 H 0.42 4.32 8.83 -92.71 -0.82 3.50 16 33 H 0.15 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.25 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.72 313.21 3.26 -80.46 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.47 Total: 9.12 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.10 Total: -6.16 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -5.12 Total: -120.01 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.75 Total: -16.79 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.06 Total: 53.38 kcal Total: -83.72 3.26 -80.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961566551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.594 kcal (2) G-P(sol) polarization free energy of solvation -83.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds