Wall clock time and date at job start Mon Mar 30 2020 20:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48505 * 109.46851 * 274.14046 * 3 2 1 5 5 H 1.48492 * 109.47053 * 34.14071 * 3 2 1 6 6 H 1.48500 * 109.46994 * 154.14135 * 3 2 1 7 7 C 1.38813 * 120.00563 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00567 * 170.42483 * 7 2 1 9 9 N 1.36935 * 119.99567 * 350.42002 * 7 2 1 10 10 C 1.47428 * 125.64921 * 349.96481 * 9 7 2 11 11 C 1.54907 * 104.83214 * 204.10557 * 10 9 7 12 12 C 1.55151 * 101.58607 * 322.99086 * 11 10 9 13 13 H 1.08999 * 110.72111 * 153.86549 * 12 11 10 14 14 N 1.46499 * 110.72144 * 276.96274 * 12 11 10 15 15 C 1.34775 * 120.00139 * 204.99885 * 14 12 11 16 16 O 1.21534 * 119.99611 * 359.97438 * 15 14 12 17 17 C 1.47976 * 120.00059 * 179.97438 * 15 14 12 18 18 C 1.39915 * 120.91387 * 359.71897 * 17 15 14 19 19 C 1.38014 * 119.01000 * 179.79693 * 18 17 15 20 20 N 1.31993 * 120.88602 * 0.48819 * 19 18 17 21 21 O 1.41599 * 118.98432 * 179.71738 * 20 19 18 22 22 C 1.31987 * 122.02780 * 359.73740 * 20 19 18 23 23 C 1.38006 * 120.89316 * 0.02562 * 22 20 19 24 24 C 1.47023 * 125.64847 * 169.94045 * 9 7 2 25 25 H 0.97003 * 120.00613 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.36432 * 85.26962 * 10 9 7 27 27 H 1.08997 * 110.36770 * 322.94669 * 10 9 7 28 28 H 1.09006 * 111.00307 * 204.91421 * 11 10 9 29 29 H 1.09004 * 111.00168 * 81.06778 * 11 10 9 30 30 H 0.97000 * 119.99856 * 24.99956 * 14 12 11 31 31 H 1.07998 * 120.49469 * 359.97438 * 18 17 15 32 32 H 1.07990 * 119.55538 * 180.20145 * 19 18 17 33 33 H 1.08004 * 119.55306 * 179.97438 * 22 20 19 34 34 H 1.08001 * 120.49981 * 179.97438 * 23 22 20 35 35 H 1.08995 * 109.88149 * 59.55111 * 24 9 7 36 36 H 1.08997 * 109.88502 * 298.37858 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4100 2.0970 -1.3965 5 1 1.4941 2.6258 0.7857 6 1 3.5887 1.4166 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0790 -1.2085 -0.1561 9 7 1.3400 -2.3798 0.1963 10 6 -0.0651 -2.5077 0.6241 11 6 -0.1537 -3.9075 1.2815 12 6 0.7934 -4.7378 0.3753 13 1 1.2069 -5.5846 0.9231 14 7 0.0922 -5.1934 -0.8276 15 6 0.5156 -6.2955 -1.4777 16 8 1.4794 -6.9110 -1.0662 17 6 -0.1929 -6.7560 -2.6924 18 6 -1.3080 -6.0653 -3.1794 19 6 -1.9365 -6.5271 -4.3181 20 7 -1.5047 -7.6089 -4.9390 21 8 -2.1835 -8.0504 -6.1006 22 6 -0.4598 -8.2919 -4.5103 23 6 0.2303 -7.8974 -3.3821 24 6 1.9021 -3.7263 0.0156 25 1 -0.4851 0.8400 0.0004 26 1 -0.7306 -2.4503 -0.2373 27 1 -0.3131 -1.7320 1.3485 28 1 -1.1719 -4.2945 1.2408 29 1 0.2118 -3.8809 2.3081 30 1 -0.6768 -4.7019 -1.1561 31 1 -1.6697 -5.1824 -2.6735 32 1 -2.7959 -5.9990 -4.7035 33 1 -0.1410 -9.1719 -5.0492 34 1 1.0842 -8.4613 -3.0367 35 1 2.7573 -3.8628 0.6774 36 1 2.2075 -3.8644 -1.0216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010033118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:26 Heat of formation + Delta-G solvation = 56.766641 kcal Electronic energy + Delta-G solvation = -20938.113646 eV Core-core repulsion = 17619.416547 eV Total energy + Delta-G solvation = -3318.697099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.68236 -39.78395 -37.48447 -34.85751 -34.10094 -32.38003 -31.83738 -30.24937 -29.26318 -27.56061 -25.38389 -24.69814 -24.34067 -21.44678 -20.41403 -20.11303 -18.82515 -17.67914 -17.26240 -16.81945 -16.07988 -15.99680 -15.77542 -14.88963 -14.79582 -14.60749 -14.37977 -13.95324 -13.39495 -12.91939 -12.74308 -12.50035 -12.13651 -11.80982 -11.40343 -11.20670 -10.98855 -10.92133 -10.62578 -10.19826 -10.16170 -10.11866 -10.11549 -9.80612 -9.60803 -9.06456 -8.83566 -8.69336 -6.93873 -5.87264 -3.19423 -0.13498 0.23815 2.24044 2.32344 2.87388 3.15653 3.32796 3.39522 3.41062 3.98283 4.10201 4.15924 4.23537 4.40795 4.49706 4.97777 5.05925 5.13234 5.27625 5.32211 5.35473 5.39796 5.55983 5.66060 6.01306 6.12688 6.27736 6.30295 6.40327 6.55667 6.75879 6.78699 7.28139 7.35400 7.42083 7.65215 7.99156 8.13396 9.07560 9.69028 10.34644 11.26197 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.003951 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.144024 B = 7084.258426 C = 7615.574672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.602 5.602 10 C 0.171 3.829 11 C -0.155 4.155 12 C 0.130 3.870 13 H 0.095 0.905 14 N -0.696 5.696 15 C 0.557 3.443 16 O -0.528 6.528 17 C -0.086 4.086 18 C -0.089 4.089 19 C 0.072 3.928 20 N -0.108 5.108 21 O -0.544 6.544 22 C 0.068 3.932 23 C -0.066 4.066 24 C 0.126 3.874 25 H 0.253 0.747 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.402 0.598 31 H 0.170 0.830 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.035 0.965 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -12.612 -1.012 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.046 3.954 11 C -0.194 4.194 12 C 0.025 3.975 13 H 0.113 0.887 14 N -0.347 5.347 15 C 0.342 3.658 16 O -0.405 6.405 17 C -0.097 4.097 18 C -0.108 4.108 19 C -0.074 4.074 20 N 0.214 4.786 21 O -0.600 6.600 22 C -0.078 4.078 23 C -0.085 4.085 24 C -0.001 4.001 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.238 0.762 31 H 0.187 0.813 32 H 0.206 0.794 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.053 0.947 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.288 -12.934 -1.042 13.176 hybrid contribution -0.042 1.204 -0.442 1.283 sum -2.330 -11.730 -1.485 12.051 Atomic orbital electron populations 1.69918 1.04980 1.25332 1.56436 1.24793 0.95640 0.97826 1.01895 0.86129 0.78830 0.83380 0.77574 1.21582 1.21548 1.20549 1.19024 0.91240 0.82693 1.42929 0.90602 1.44488 1.09344 0.99774 1.79299 1.21440 0.86011 0.91167 0.96812 1.23368 0.97953 0.98965 0.99163 1.22111 0.93935 0.96925 0.84482 0.88678 1.45925 1.33379 1.26787 1.28572 1.17834 0.83952 0.81243 0.82807 1.90806 1.26728 1.56304 1.66686 1.20740 0.95958 0.96114 0.96927 1.22103 0.93918 1.00276 0.94553 1.22628 1.01451 0.89740 0.93538 1.43343 1.11281 1.09302 1.14673 1.97673 1.66524 1.83083 1.12748 1.22672 0.88854 0.99708 0.96518 1.21974 0.99551 0.95082 0.91942 1.21699 0.94154 0.85887 0.98330 0.93646 0.95675 0.90930 0.91416 0.90287 0.76195 0.81313 0.79397 0.79461 0.80652 0.94737 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.25 10.68 55.49 0.59 -24.65 16 2 C 0.00 -0.13 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.17 29.56 -169.99 -5.03 16.15 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.23 -6.11 10.24 -15.06 -0.15 -6.27 16 8 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 9 N -0.60 -14.14 3.39 -170.07 -0.58 -14.72 16 10 C 0.17 3.58 5.39 -2.53 -0.01 3.57 16 11 C -0.16 -2.39 6.66 -24.59 -0.16 -2.55 16 12 C 0.13 1.98 3.32 -66.09 -0.22 1.76 16 13 H 0.10 1.41 7.55 -51.93 -0.39 1.01 16 14 N -0.70 -8.87 5.06 -52.93 -0.27 -9.13 16 15 C 0.56 6.97 7.79 -12.27 -0.10 6.88 16 16 O -0.53 -8.18 16.09 5.34 0.09 -8.09 16 17 C -0.09 -0.82 5.91 -104.65 -0.62 -1.44 16 18 C -0.09 -0.70 9.61 -39.04 -0.38 -1.07 16 19 C 0.07 0.67 10.67 -17.56 -0.19 0.48 16 20 N -0.11 -1.34 3.58 -13.30 -0.05 -1.39 16 21 O -0.54 -10.20 20.04 -11.47 -0.23 -10.43 16 22 C 0.07 0.62 10.67 -17.57 -0.19 0.43 16 23 C -0.07 -0.54 9.68 -39.04 -0.38 -0.92 16 24 C 0.13 2.46 6.99 -3.06 -0.02 2.43 16 25 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 26 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.07 1.75 6.94 -51.93 -0.36 1.39 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 4.39 6.78 -40.82 -0.28 4.12 16 31 H 0.17 0.93 6.53 -52.49 -0.34 0.58 16 32 H 0.19 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.19 1.28 8.06 -52.48 -0.42 0.86 16 34 H 0.18 1.18 7.74 -52.49 -0.41 0.77 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.55 8.05 -51.93 -0.42 0.14 16 LS Contribution 310.42 15.07 4.68 4.68 Total: -1.00 -36.22 310.42 -7.58 -43.80 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.28 Total: 0.73 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.51 Total: 3.07 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.30 Total: -49.90 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.14 Total: -18.52 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.22 -7.58 -43.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010033118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.562 kcal (2) G-P(sol) polarization free energy of solvation -36.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds