Wall clock time and date at job start Mon Mar 30 2020 20:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99843 * 2 1 4 4 H 1.48505 * 109.46851 * 274.14046 * 3 2 1 5 5 H 1.48492 * 109.47053 * 34.14071 * 3 2 1 6 6 H 1.48500 * 109.46994 * 154.14135 * 3 2 1 7 7 C 1.38813 * 120.00563 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00567 * 170.42483 * 7 2 1 9 9 N 1.36935 * 119.99567 * 350.42002 * 7 2 1 10 10 C 1.47428 * 125.64921 * 349.96481 * 9 7 2 11 11 C 1.54907 * 104.83214 * 204.10557 * 10 9 7 12 12 C 1.55151 * 101.58607 * 322.99086 * 11 10 9 13 13 H 1.08999 * 110.72111 * 153.86549 * 12 11 10 14 14 N 1.46499 * 110.72144 * 276.96274 * 12 11 10 15 15 C 1.34775 * 120.00139 * 204.99885 * 14 12 11 16 16 O 1.21534 * 119.99611 * 359.97438 * 15 14 12 17 17 C 1.47976 * 120.00059 * 179.97438 * 15 14 12 18 18 C 1.39915 * 120.91387 * 359.71897 * 17 15 14 19 19 C 1.38014 * 119.01000 * 179.79693 * 18 17 15 20 20 N 1.31993 * 120.88602 * 0.48819 * 19 18 17 21 21 O 1.41599 * 118.98432 * 179.71738 * 20 19 18 22 22 C 1.31987 * 122.02780 * 359.73740 * 20 19 18 23 23 C 1.38006 * 120.89316 * 0.02562 * 22 20 19 24 24 C 1.47023 * 125.64847 * 169.94045 * 9 7 2 25 25 H 0.97003 * 120.00613 * 359.97438 * 1 2 3 26 26 H 1.09003 * 110.36432 * 85.26962 * 10 9 7 27 27 H 1.08997 * 110.36770 * 322.94669 * 10 9 7 28 28 H 1.09006 * 111.00307 * 204.91421 * 11 10 9 29 29 H 1.09004 * 111.00168 * 81.06778 * 11 10 9 30 30 H 0.97000 * 119.99856 * 24.99956 * 14 12 11 31 31 H 1.07998 * 120.49469 * 359.97438 * 18 17 15 32 32 H 1.07990 * 119.55538 * 180.20145 * 19 18 17 33 33 H 1.08004 * 119.55306 * 179.97438 * 22 20 19 34 34 H 1.08001 * 120.49981 * 179.97438 * 23 22 20 35 35 H 1.08995 * 109.88149 * 59.55111 * 24 9 7 36 36 H 1.08997 * 109.88502 * 298.37858 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4100 2.0970 -1.3965 5 1 1.4941 2.6258 0.7857 6 1 3.5887 1.4166 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0790 -1.2085 -0.1561 9 7 1.3400 -2.3798 0.1963 10 6 -0.0651 -2.5077 0.6241 11 6 -0.1537 -3.9075 1.2815 12 6 0.7934 -4.7378 0.3753 13 1 1.2069 -5.5846 0.9231 14 7 0.0922 -5.1934 -0.8276 15 6 0.5156 -6.2955 -1.4777 16 8 1.4794 -6.9110 -1.0662 17 6 -0.1929 -6.7560 -2.6924 18 6 -1.3080 -6.0653 -3.1794 19 6 -1.9365 -6.5271 -4.3181 20 7 -1.5047 -7.6089 -4.9390 21 8 -2.1835 -8.0504 -6.1006 22 6 -0.4598 -8.2919 -4.5103 23 6 0.2303 -7.8974 -3.3821 24 6 1.9021 -3.7263 0.0156 25 1 -0.4851 0.8400 0.0004 26 1 -0.7306 -2.4503 -0.2373 27 1 -0.3131 -1.7320 1.3485 28 1 -1.1719 -4.2945 1.2408 29 1 0.2118 -3.8809 2.3081 30 1 -0.6768 -4.7019 -1.1561 31 1 -1.6697 -5.1824 -2.6735 32 1 -2.7959 -5.9990 -4.7035 33 1 -0.1410 -9.1719 -5.0492 34 1 1.0842 -8.4613 -3.0367 35 1 2.7573 -3.8628 0.6774 36 1 2.2075 -3.8644 -1.0216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010033118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:26 Heat of formation + Delta-G solvation = 30.823181 kcal Electronic energy + Delta-G solvation = -20939.238639 eV Core-core repulsion = 17619.416547 eV Total energy + Delta-G solvation = -3319.822092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.50700 -40.88410 -38.90738 -35.80445 -35.48321 -33.74150 -32.89009 -31.44210 -30.80709 -29.04698 -26.71547 -25.88723 -25.33257 -22.49771 -22.06523 -21.39744 -19.73443 -18.83770 -18.54221 -17.94178 -17.19783 -16.81542 -16.69345 -16.63649 -15.99645 -15.67340 -15.56506 -15.23200 -14.73239 -14.35663 -13.81950 -13.66720 -13.41570 -13.15981 -13.00329 -12.77241 -12.38667 -12.21852 -12.15896 -11.95519 -11.84044 -11.57861 -11.26015 -10.80339 -10.79452 -10.66423 -10.24263 -10.01440 -8.83753 -7.88637 -5.20835 -0.95244 -0.44143 1.42026 1.44295 1.47371 1.48969 1.57518 1.87028 2.30313 2.50210 3.16184 3.32168 3.40822 3.42046 3.49469 3.71830 3.80107 3.80935 4.06457 4.25956 4.34394 4.41992 4.61634 4.68329 4.70721 4.74435 4.92485 5.00080 5.08051 5.46468 5.49588 5.63163 5.68208 5.76018 5.76926 6.22387 6.38124 6.99049 7.11692 7.77861 8.42078 9.22756 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.023882 B = 0.003951 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.144024 B = 7084.258426 C = 7615.574672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.053 4.053 3 Si 0.969 3.031 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.622 5.622 10 C 0.173 3.827 11 C -0.134 4.134 12 C 0.146 3.854 13 H 0.109 0.891 14 N -0.693 5.693 15 C 0.562 3.438 16 O -0.556 6.556 17 C -0.086 4.086 18 C -0.071 4.071 19 C 0.076 3.924 20 N -0.132 5.132 21 O -0.614 6.614 22 C 0.076 3.924 23 C -0.052 4.052 24 C 0.123 3.877 25 H 0.249 0.751 26 H 0.013 0.987 27 H 0.035 0.965 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.413 0.587 31 H 0.197 0.803 32 H 0.204 0.796 33 H 0.207 0.793 34 H 0.195 0.805 35 H 0.032 0.968 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -13.310 -0.234 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.349 5.349 10 C 0.048 3.952 11 C -0.173 4.173 12 C 0.041 3.959 13 H 0.127 0.873 14 N -0.344 5.344 15 C 0.349 3.651 16 O -0.435 6.435 17 C -0.097 4.097 18 C -0.090 4.090 19 C -0.069 4.069 20 N 0.188 4.812 21 O -0.668 6.668 22 C -0.069 4.069 23 C -0.071 4.071 24 C -0.004 4.004 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.250 0.750 31 H 0.214 0.786 32 H 0.221 0.779 33 H 0.223 0.777 34 H 0.212 0.788 35 H 0.050 0.950 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -2.241 -13.661 -0.292 13.846 hybrid contribution 0.054 1.449 -0.576 1.560 sum -2.187 -12.212 -0.869 12.436 Atomic orbital electron populations 1.70074 1.05921 1.25478 1.57362 1.25469 0.96471 1.00469 1.02333 0.85222 0.77907 0.79855 0.77253 1.21580 1.21780 1.19891 1.19301 0.91467 0.84339 1.42422 0.91128 1.44748 1.10385 1.00420 1.79347 1.21314 0.84585 0.93491 0.95764 1.23209 1.00181 0.95049 0.98836 1.21833 0.92664 0.96110 0.85328 0.87278 1.45819 1.33489 1.26999 1.28071 1.18082 0.83432 0.80595 0.83020 1.90804 1.28028 1.57116 1.67548 1.20629 0.96334 0.96761 0.95996 1.22307 0.92724 1.00422 0.93530 1.23011 1.01739 0.88829 0.93313 1.43428 1.12464 1.10873 1.14441 1.97641 1.68532 1.84585 1.16026 1.23046 0.87631 0.99810 0.96374 1.22134 0.99499 0.94560 0.90946 1.21825 0.95698 0.85358 0.97475 0.94180 0.96859 0.94664 0.87758 0.89634 0.74972 0.78587 0.77875 0.77651 0.78775 0.95039 0.96799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.08 10.68 21.65 0.23 -51.85 16 2 C -0.05 -2.85 5.40 84.86 0.46 -2.39 16 3 Si 0.97 43.67 29.56 68.60 2.03 45.69 16 4 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -13.11 10.24 84.03 0.86 -12.25 16 8 H 0.07 3.72 7.85 -2.91 -0.02 3.69 16 9 N -0.62 -29.05 3.39 -691.97 -2.35 -31.40 16 10 C 0.17 7.15 5.39 86.85 0.47 7.61 16 11 C -0.13 -3.74 6.66 31.98 0.21 -3.53 16 12 C 0.15 4.05 3.32 46.18 0.15 4.21 16 13 H 0.11 2.85 7.55 -2.39 -0.02 2.83 16 14 N -0.69 -15.47 5.06 -439.66 -2.22 -17.70 16 15 C 0.56 12.37 7.79 86.83 0.68 13.04 16 16 O -0.56 -15.71 16.09 -3.82 -0.06 -15.78 16 17 C -0.09 -1.37 5.91 -19.88 -0.12 -1.49 16 18 C -0.07 -0.89 9.61 22.62 0.22 -0.67 16 19 C 0.08 1.27 10.67 84.62 0.90 2.17 16 20 N -0.13 -3.15 3.58 -195.99 -0.70 -3.85 16 21 O -0.61 -23.54 20.04 -38.78 -0.78 -24.32 16 22 C 0.08 1.26 10.67 84.61 0.90 2.17 16 23 C -0.05 -0.71 9.68 22.62 0.22 -0.50 16 24 C 0.12 4.65 6.99 86.73 0.61 5.25 16 25 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 26 H 0.01 0.58 8.07 -2.39 -0.02 0.56 16 27 H 0.03 1.71 6.94 -2.39 -0.02 1.69 16 28 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.41 7.56 6.78 -92.71 -0.63 6.93 16 31 H 0.20 1.36 6.53 -2.91 -0.02 1.34 16 32 H 0.20 2.63 8.06 -2.92 -0.02 2.61 16 33 H 0.21 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.20 1.98 7.74 -2.91 -0.02 1.95 16 35 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.01 0.56 8.05 -2.39 -0.02 0.54 16 Total: -1.00 -80.62 310.42 2.19 -78.44 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.48 Total: 7.13 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.56 Total: 13.63 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -5.04 Total: -104.80 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.84 Total: -40.09 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -80.62 2.19 -78.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010033118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.262 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds