Wall clock time and date at job start Mon Mar 30 2020 20:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48503 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48491 * 109.47647 * 300.00289 * 3 2 1 6 6 H 1.48501 * 109.46835 * 60.00868 * 3 2 1 7 7 C 1.38809 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99657 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00452 * 0.02562 * 7 2 1 10 10 C 1.47029 * 125.64542 * 359.96960 * 9 7 2 11 11 C 1.54327 * 107.26790 * 178.99180 * 10 9 7 12 12 C 1.55154 * 102.94290 * 337.80696 * 11 10 9 13 13 H 1.09002 * 111.00378 * 277.42832 * 12 11 10 14 14 N 1.46500 * 111.00420 * 153.61252 * 12 11 10 15 15 C 1.34773 * 120.00200 * 158.17403 * 14 12 11 16 16 O 1.21540 * 119.99599 * 0.02562 * 15 14 12 17 17 C 1.47981 * 120.00320 * 180.02562 * 15 14 12 18 18 C 1.39910 * 120.90984 * 359.72536 * 17 15 14 19 19 C 1.38017 * 119.00974 * 179.79034 * 18 17 15 20 20 N 1.31988 * 120.88355 * 0.47473 * 19 18 17 21 21 O 1.41607 * 118.98500 * 179.75446 * 20 19 18 22 22 C 1.31994 * 122.03133 * 359.77776 * 20 19 18 23 23 C 1.38004 * 120.88865 * 359.97438 * 22 20 19 24 24 C 1.47418 * 125.64960 * 180.02562 * 9 7 2 25 25 H 0.97001 * 119.99838 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.88066 * 59.57163 * 10 9 7 27 27 H 1.09003 * 109.87770 * 298.40821 * 10 9 7 28 28 H 1.09004 * 110.71649 * 219.44279 * 11 10 9 29 29 H 1.08997 * 110.87056 * 96.24201 * 11 10 9 30 30 H 0.97001 * 120.00052 * 338.18451 * 14 12 11 31 31 H 1.07997 * 120.49865 * 0.02562 * 18 17 15 32 32 H 1.07996 * 119.55940 * 180.22497 * 19 18 17 33 33 H 1.07993 * 119.55295 * 179.97438 * 22 20 19 34 34 H 1.08001 * 120.49627 * 179.97438 * 23 22 20 35 35 H 1.08995 * 110.37279 * 85.24162 * 24 9 7 36 36 H 1.08997 * 110.36990 * 322.91360 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5328 -0.0016 11 6 -0.4486 -4.0441 -0.0290 12 6 0.8518 -4.6559 -0.6139 13 1 0.8568 -4.5957 -1.7022 14 7 1.0286 -6.0397 -0.1665 15 6 1.8109 -6.8810 -0.8711 16 8 2.3701 -6.4915 -1.8774 17 6 1.9890 -8.2790 -0.4195 18 6 1.3589 -8.7458 0.7392 19 6 1.5487 -10.0581 1.1219 20 7 2.3191 -10.8649 0.4164 21 8 2.4899 -12.2025 0.8488 22 6 2.9356 -10.4633 -0.6795 23 6 2.7967 -9.1685 -1.1364 24 6 1.9334 -3.7311 -0.0017 25 1 -0.4850 0.8401 0.0004 26 1 -0.5576 -2.0518 -0.8849 27 1 -0.5544 -2.0847 0.9005 28 1 -1.2986 -4.2512 -0.6791 29 1 -0.6334 -4.4208 0.9770 30 1 0.5824 -6.3504 0.6368 31 1 0.7302 -8.0901 1.3233 32 1 1.0636 -10.4288 2.0127 33 1 3.5570 -11.1573 -1.2258 34 1 3.3044 -8.8465 -2.0336 35 1 2.1663 -4.0423 1.0166 36 1 2.8329 -3.7404 -0.6172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010033122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:28 Heat of formation + Delta-G solvation = 58.531716 kcal Electronic energy + Delta-G solvation = -20640.352699 eV Core-core repulsion = 17321.732140 eV Total energy + Delta-G solvation = -3318.620559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.121 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.78164 -39.79832 -37.45207 -34.96522 -34.31579 -32.45246 -31.91966 -30.34514 -29.27335 -27.43000 -25.45263 -24.79107 -24.25799 -21.40965 -20.64326 -20.12741 -18.85860 -17.78053 -17.36563 -16.83556 -16.17745 -16.06137 -15.85642 -14.95748 -14.76148 -14.68615 -14.42278 -14.14203 -13.14288 -12.91649 -12.63924 -12.53983 -12.42512 -11.95064 -11.49887 -11.15041 -11.01524 -10.86336 -10.59450 -10.22356 -10.19861 -10.09554 -10.07225 -9.80777 -9.70221 -9.11128 -8.92407 -8.69272 -6.94575 -5.80383 -3.14429 -0.23615 0.13029 2.13922 2.23358 2.77105 3.06247 3.35548 3.41704 3.43800 3.86855 3.98520 4.04005 4.13081 4.38393 4.45345 4.88690 4.93837 5.08499 5.22021 5.29243 5.33028 5.47598 5.56542 5.63296 5.96030 6.12520 6.25101 6.30112 6.35851 6.52987 6.65691 6.74050 7.28413 7.44607 7.46213 7.72103 7.92061 8.15433 9.12609 9.72310 10.35756 11.31569 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.044497 B = 0.003184 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.103511 B = 8793.132206 C = 9002.879123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.603 5.603 10 C 0.178 3.822 11 C -0.149 4.149 12 C 0.125 3.875 13 H 0.100 0.900 14 N -0.703 5.703 15 C 0.554 3.446 16 O -0.519 6.519 17 C -0.086 4.086 18 C -0.092 4.092 19 C 0.071 3.929 20 N -0.109 5.109 21 O -0.543 6.543 22 C 0.070 3.930 23 C -0.065 4.065 24 C 0.129 3.871 25 H 0.253 0.747 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.398 0.602 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.189 0.811 34 H 0.177 0.823 35 H 0.020 0.980 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.255 -15.510 0.348 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.053 3.947 11 C -0.188 4.188 12 C 0.021 3.979 13 H 0.118 0.882 14 N -0.354 5.354 15 C 0.339 3.661 16 O -0.395 6.395 17 C -0.097 4.097 18 C -0.112 4.112 19 C -0.075 4.075 20 N 0.213 4.787 21 O -0.599 6.599 22 C -0.076 4.076 23 C -0.085 4.085 24 C 0.002 3.998 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.233 0.767 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.206 0.794 34 H 0.194 0.806 35 H 0.038 0.962 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.143 -15.356 -0.256 15.359 hybrid contribution 0.176 0.573 0.553 0.815 sum 0.319 -14.783 0.296 14.789 Atomic orbital electron populations 1.69946 1.04901 1.25102 1.57074 1.24812 0.95772 0.97760 1.02024 0.86013 0.78766 0.83523 0.77272 1.20441 1.21663 1.21702 1.19113 0.90550 0.82166 1.43872 0.90262 1.44393 1.01591 0.99750 1.87291 1.21169 0.84562 0.87252 1.01695 1.23204 0.95631 1.00173 0.99801 1.22466 0.97473 0.77718 1.00270 0.88182 1.45953 1.48404 1.12331 1.28675 1.17874 0.80081 0.84108 0.84086 1.90851 1.46860 1.76952 1.24818 1.20767 0.97691 0.95729 0.95501 1.22042 0.98568 0.94682 0.95861 1.22612 0.95426 0.90019 0.99411 1.43355 1.13696 1.12660 1.08943 1.97680 1.90389 0.88110 1.83765 1.22700 0.98380 0.96870 0.89603 1.22010 0.95600 0.90363 1.00499 1.21814 0.94746 0.86210 0.97040 0.93695 0.93075 0.93399 0.91374 0.91900 0.76690 0.81473 0.79457 0.79393 0.80555 0.96208 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.31 55.49 0.57 -25.53 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.20 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -14.66 3.39 -170.07 -0.58 -15.24 16 10 C 0.18 3.97 5.37 -3.06 -0.02 3.95 16 11 C -0.15 -2.33 6.59 -24.90 -0.16 -2.49 16 12 C 0.13 1.95 3.37 -65.78 -0.22 1.73 16 13 H 0.10 1.74 7.63 -51.93 -0.40 1.34 16 14 N -0.70 -7.76 5.17 -52.63 -0.27 -8.04 16 15 C 0.55 6.38 7.79 -12.27 -0.10 6.29 16 16 O -0.52 -8.05 16.14 5.33 0.09 -7.97 16 17 C -0.09 -0.69 5.91 -104.65 -0.62 -1.31 16 18 C -0.09 -0.53 9.61 -39.04 -0.38 -0.90 16 19 C 0.07 0.53 10.67 -17.57 -0.19 0.34 16 20 N -0.11 -1.21 3.58 -13.30 -0.05 -1.25 16 21 O -0.54 -9.54 20.04 -11.47 -0.23 -9.77 16 22 C 0.07 0.56 10.67 -17.57 -0.19 0.38 16 23 C -0.07 -0.47 9.68 -39.04 -0.38 -0.85 16 24 C 0.13 2.53 6.93 -2.53 -0.02 2.51 16 25 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.05 1.28 7.38 -51.93 -0.38 0.89 16 27 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.84 7.99 -51.93 -0.42 0.42 16 30 H 0.40 2.98 6.67 -40.82 -0.27 2.70 16 31 H 0.17 0.41 6.53 -52.49 -0.34 0.06 16 32 H 0.19 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.19 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.18 1.08 7.74 -52.49 -0.41 0.67 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -37.54 310.01 -7.60 -45.14 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.27 Total: -1.55 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.51 Total: 2.99 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.32 Total: -50.07 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.14 Total: -17.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.54 -7.60 -45.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010033122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.670 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds