Wall clock time and date at job start Mon Mar 30 2020 20:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99765 * 2 1 4 4 C 1.53002 * 109.47132 * 125.00205 * 3 2 1 5 5 C 1.53002 * 109.47412 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46867 * 179.97438 * 5 4 3 7 7 C 1.40000 * 119.99414 * 179.97438 * 6 5 4 8 8 C 1.38641 * 120.10373 * 0.02562 * 7 6 5 9 9 C 1.38284 * 120.00818 * 179.97438 * 8 7 6 10 10 C 1.38275 * 120.20418 * 359.97438 * 9 8 7 11 11 C 1.38247 * 120.19312 * 0.02562 * 10 9 8 12 12 C 1.38724 * 119.99820 * 0.02562 * 11 10 9 13 13 S 1.76201 * 120.10569 * 179.97438 * 12 11 10 14 14 C 1.81406 * 102.99596 * 359.97438 * 13 12 11 15 15 C 1.50701 * 109.47044 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99746 * 359.97438 * 15 14 13 17 17 C 1.37872 * 120.00074 * 180.02562 * 15 14 13 18 18 N 1.31508 * 119.99939 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99906 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47261 * 89.99989 * 19 17 15 21 21 H 1.48499 * 109.47410 * 210.00120 * 19 17 15 22 22 H 1.48501 * 109.47471 * 330.00087 * 19 17 15 23 23 H 1.07995 * 120.00062 * 359.97438 * 1 2 3 24 24 H 1.08000 * 119.99765 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.00275 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47410 * 5.00427 * 3 2 1 27 27 H 1.09004 * 109.47636 * 245.00231 * 3 2 1 28 28 H 1.09003 * 109.46792 * 59.99843 * 4 3 2 29 29 H 1.09004 * 109.46881 * 300.00488 * 4 3 2 30 30 H 1.08999 * 109.46712 * 60.00365 * 5 4 3 31 31 H 1.08999 * 109.47173 * 300.00029 * 5 4 3 32 32 H 0.97001 * 120.00343 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.99368 * 359.95163 * 8 7 6 34 34 H 1.08004 * 119.90252 * 180.02562 * 9 8 7 35 35 H 1.07996 * 119.90390 * 179.74422 * 10 9 8 36 36 H 1.08007 * 120.00130 * 180.02562 * 11 10 9 37 37 H 1.08999 * 109.47274 * 300.00167 * 14 13 12 38 38 H 1.09004 * 109.46798 * 60.00268 * 14 13 12 39 39 H 0.97006 * 119.99920 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1813 6 7 4.7303 2.6848 2.3131 7 6 5.5462 3.8031 2.5221 8 6 5.4757 4.8863 1.6597 9 6 6.2821 5.9901 1.8682 10 6 7.1602 6.0183 2.9360 11 6 7.2374 4.9428 3.8012 12 6 6.4330 3.8309 3.5991 13 16 6.5296 2.4582 4.6996 14 6 7.7936 2.9795 5.8919 15 6 7.9956 1.8934 6.9169 16 1 7.4206 0.9810 6.8573 17 6 8.9134 2.0649 7.9313 18 7 9.6123 3.1764 8.0047 19 14 9.1631 0.7189 9.2023 20 1 10.2232 -0.2110 8.7367 21 1 9.5708 1.3273 10.4941 22 1 7.8940 -0.0298 9.3865 23 1 -0.5400 0.9353 0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3585 2.1317 0.0896 27 1 2.6212 1.4027 -0.9314 28 1 3.7400 0.5065 1.0920 29 1 2.4772 1.2355 2.1130 30 1 3.0958 3.4846 1.2707 31 1 4.3583 2.7550 0.2499 32 1 4.7812 1.9276 2.9172 33 1 4.7910 4.8679 0.8246 34 1 6.2254 6.8332 1.1956 35 1 7.7907 6.8811 3.0920 36 1 7.9241 4.9683 4.6345 37 1 8.7320 3.1642 5.3691 38 1 7.4689 3.8933 6.3894 39 1 10.2578 3.2972 8.7186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157181663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:36 Heat of formation + Delta-G solvation = 22.222352 kcal Electronic energy + Delta-G solvation = -17919.290929 eV Core-core repulsion = 15145.389092 eV Total energy + Delta-G solvation = -2773.901837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.120 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98408 -36.82402 -34.90293 -33.22210 -31.64035 -30.63687 -28.59545 -28.43486 -25.49160 -23.27931 -22.85185 -21.55539 -20.90251 -20.01099 -17.55119 -16.33912 -16.14302 -16.06162 -15.73994 -15.00359 -14.71143 -14.17798 -13.93726 -13.64981 -13.41428 -13.19669 -12.89634 -12.73695 -12.33585 -12.25590 -11.94985 -11.86210 -11.50328 -11.13113 -11.03218 -10.92990 -10.88051 -10.66626 -9.95220 -9.80635 -9.64611 -9.62177 -9.09436 -9.02970 -8.60347 -7.45169 -6.30035 -6.23992 -4.29247 1.76257 1.99509 2.00466 2.58422 3.23715 3.29570 3.34359 3.57028 3.82749 4.23828 4.31670 4.51268 4.70169 4.94518 5.04375 5.13087 5.13454 5.26505 5.35762 5.41917 5.47214 5.56154 5.62924 5.69781 5.90844 5.93256 5.97345 6.10789 6.32968 6.35480 6.48343 6.55541 6.75622 7.00486 7.02046 7.05116 7.21243 7.63147 7.69216 7.93776 7.98608 8.71747 9.34321 10.87295 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003846 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.605361 B = 7278.224568 C = 9013.985345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.090 4.090 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.746 5.746 7 C 0.223 3.777 8 C -0.190 4.190 9 C -0.094 4.094 10 C -0.160 4.160 11 C -0.089 4.089 12 C -0.137 4.137 13 S -0.181 6.181 14 C 0.079 3.921 15 C -0.517 4.517 16 H 0.068 0.932 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.908 3.092 20 H -0.277 1.277 21 H -0.283 1.283 22 H -0.271 1.271 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.404 0.596 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.130 0.870 37 H 0.042 0.958 38 H 0.043 0.957 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.604 0.073 -15.438 19.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.170 4.170 3 C -0.128 4.128 4 C -0.166 4.166 5 C 0.004 3.996 6 N -0.379 5.379 7 C 0.115 3.885 8 C -0.214 4.214 9 C -0.116 4.116 10 C -0.182 4.182 11 C -0.114 4.114 12 C -0.253 4.253 13 S 0.064 5.936 14 C -0.068 4.068 15 C -0.557 4.557 16 H 0.086 0.914 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.209 1.209 22 H -0.195 1.195 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.127 0.873 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.148 0.852 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.174 -0.936 -15.409 20.294 hybrid contribution 0.960 0.313 0.942 1.381 sum -12.214 -0.623 -14.466 18.943 Atomic orbital electron populations 1.23859 0.95987 1.01825 1.01702 1.22968 0.96045 0.98559 0.99394 1.20672 0.98029 0.95585 0.98519 1.21717 0.98230 0.97507 0.99132 1.21251 0.91468 0.97336 0.89520 1.44724 1.42738 1.18591 1.31829 1.17303 0.90433 0.87845 0.92891 1.20415 1.04953 0.94462 1.01608 1.20761 0.96075 0.97213 0.97522 1.20796 1.01579 0.98909 0.96869 1.21180 0.98207 0.92394 0.99619 1.21491 1.02614 1.00647 1.00586 1.84888 1.55897 1.22819 1.30027 1.21301 0.92165 1.00197 0.93088 1.20634 1.22972 1.02160 1.09926 0.91434 1.24949 0.95037 0.96147 0.97571 1.69947 1.24463 1.25193 1.33130 0.86335 0.78760 0.81277 0.80201 1.20296 1.20907 1.19524 0.88611 0.88584 0.87324 0.91263 0.90710 0.91013 0.91044 0.92644 0.92597 0.75927 0.86577 0.86752 0.86662 0.85242 0.93939 0.93929 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.45 14.32 29.01 0.42 -1.03 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.53 16 3 C -0.09 -0.69 5.66 -27.88 -0.16 -0.85 16 4 C -0.13 -1.18 5.31 -26.73 -0.14 -1.32 16 5 C 0.13 1.40 4.92 -4.04 -0.02 1.38 16 6 N -0.75 -11.03 5.68 -58.44 -0.33 -11.36 16 7 C 0.22 3.82 6.66 -83.49 -0.56 3.26 16 8 C -0.19 -2.84 9.31 -39.42 -0.37 -3.21 16 9 C -0.09 -1.37 10.04 -39.55 -0.40 -1.77 16 10 C -0.16 -2.61 10.04 -39.56 -0.40 -3.00 16 11 C -0.09 -1.72 9.36 -39.40 -0.37 -2.09 16 12 C -0.14 -2.71 6.12 -38.92 -0.24 -2.95 16 13 S -0.18 -3.97 20.37 -107.50 -2.19 -6.16 16 14 C 0.08 2.05 4.09 36.01 0.15 2.20 16 15 C -0.52 -14.42 9.13 -34.44 -0.31 -14.74 16 16 H 0.07 1.86 7.71 -52.48 -0.40 1.46 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 18 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 24 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 25 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 26 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.58 7.95 -51.93 -0.41 0.17 16 31 H 0.06 0.58 7.95 -51.93 -0.41 0.16 16 32 H 0.40 6.27 7.02 -40.82 -0.29 5.99 16 33 H 0.12 1.44 6.74 -52.49 -0.35 1.08 16 34 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.13 2.68 5.88 -52.48 -0.31 2.37 16 37 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 38 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -29.25 339.48 -10.42 -39.67 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.89 Total: 5.36 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -2.84 Total: -23.86 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.40 Total: -36.26 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -3.97 SS G_CDS: -2.19 Total: -6.16 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.25 -10.42 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157181663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.897 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds