Wall clock time and date at job start Mon Mar 30 2020 20:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 F 1.39908 * 110.63788 * 2 1 4 4 C 1.55150 * 110.72141 * 236.66345 * 2 1 3 5 5 C 1.55128 * 101.48444 * 205.96770 * 4 2 1 6 6 N 1.47424 * 104.72667 * 37.29500 * 5 4 2 7 7 C 1.34774 * 125.65038 * 155.81617 * 6 5 4 8 8 O 1.21550 * 119.99624 * 186.24679 * 7 6 5 9 9 C 1.47881 * 119.99966 * 6.24638 * 7 6 5 10 10 C 1.39924 * 120.02440 * 201.49311 * 9 7 6 11 11 C 1.38322 * 120.35868 * 180.02562 * 10 9 7 12 12 C 1.37757 * 120.41266 * 359.97438 * 11 10 9 13 13 C 1.40739 * 120.03927 * 359.96019 * 12 11 10 14 14 C 1.41437 * 120.17836 * 179.74581 * 13 12 11 15 15 H 1.08002 * 120.00400 * 156.44387 * 14 13 12 16 16 C 1.39938 * 119.99922 * 336.44827 * 14 13 12 17 17 N 1.30819 * 119.99983 * 343.54825 * 16 14 13 18 18 Si 1.86803 * 120.00007 * 163.55150 * 16 14 13 19 19 H 1.48495 * 109.47041 * 89.99601 * 18 16 14 20 20 H 1.48500 * 109.47170 * 209.99915 * 18 16 14 21 21 H 1.48505 * 109.47119 * 329.99979 * 18 16 14 22 22 C 1.38990 * 120.02857 * 21.42758 * 9 7 6 23 23 C 1.47027 * 108.69881 * 335.55365 * 6 5 4 24 24 H 1.09005 * 109.47155 * 298.31622 * 1 2 3 25 25 H 1.09001 * 109.47126 * 58.31263 * 1 2 3 26 26 H 1.09003 * 109.47085 * 178.31546 * 1 2 3 27 27 H 1.09004 * 111.00627 * 324.20437 * 4 2 1 28 28 H 1.08998 * 111.00551 * 88.02202 * 4 2 1 29 29 H 1.09003 * 110.49970 * 278.44724 * 5 4 2 30 30 H 1.09004 * 110.34367 * 156.05653 * 5 4 2 31 31 H 1.08004 * 119.81823 * 359.97438 * 10 9 7 32 32 H 1.07998 * 119.79399 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.97632 * 179.97438 * 12 11 10 34 34 H 0.96998 * 120.00096 * 179.97438 * 17 16 14 35 35 H 1.08006 * 120.19815 * 0.04364 * 22 9 7 36 36 H 1.08998 * 109.88532 * 120.70577 * 23 6 5 37 37 H 1.09000 * 109.87981 * 241.87043 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 2.0231 1.3093 0.0000 4 6 2.0789 -0.7975 -1.2124 5 6 3.4666 -1.2466 -0.6839 6 7 3.2446 -1.5493 0.7418 7 6 3.9924 -2.3809 1.4939 8 8 3.6513 -2.6446 2.6304 9 6 5.2279 -2.9723 0.9366 10 6 5.7578 -4.1412 1.4939 11 6 6.9134 -4.7000 0.9785 12 6 7.5556 -4.1129 -0.0895 13 6 7.0368 -2.9376 -0.6642 14 6 7.6967 -2.3294 -1.7573 15 1 7.1473 -1.6889 -2.4314 16 6 9.0616 -2.5576 -1.9656 17 7 9.7963 -3.0525 -1.0030 18 14 9.8343 -2.1554 -3.6180 19 1 10.3240 -0.7535 -3.6074 20 1 10.9726 -3.0755 -3.8693 21 1 8.8206 -2.3175 -4.6911 22 6 5.8630 -2.3682 -0.1421 23 6 2.0760 -0.7890 1.2087 24 1 -0.3634 0.4875 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3633 -1.0272 -0.0302 27 1 1.4452 -1.6561 -1.4346 28 1 2.1843 -0.1555 -2.0869 29 1 4.1947 -0.4427 -0.7921 30 1 3.8032 -2.1382 -1.2130 31 1 5.2623 -4.6092 2.3317 32 1 7.3146 -5.6022 1.4160 33 1 8.4576 -4.5550 -0.4861 34 1 10.7423 -3.2110 -1.1475 35 1 5.4573 -1.4660 -0.5757 36 1 1.3130 -1.4730 1.5802 37 1 2.3741 -0.0988 1.9979 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336166325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:20 Heat of formation + Delta-G solvation = -76.570731 kcal Electronic energy + Delta-G solvation = -21328.595880 eV Core-core repulsion = 17984.196877 eV Total energy + Delta-G solvation = -3344.399003 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.74228 -41.26209 -39.03567 -38.25611 -35.55164 -33.83236 -31.85791 -31.53424 -30.77448 -27.75716 -27.21204 -25.03570 -23.31632 -22.59289 -21.48532 -20.96795 -19.08976 -17.84587 -17.76857 -17.33297 -16.64529 -16.51203 -16.30930 -15.95891 -15.87096 -15.14518 -14.85399 -14.53019 -14.31345 -14.04071 -13.92551 -13.50677 -13.47594 -13.24363 -13.06822 -12.95452 -12.82549 -12.56910 -12.42825 -12.22605 -12.01754 -11.83285 -11.56515 -11.29473 -11.05109 -10.89339 -9.86805 -9.51400 -9.39027 -8.64554 -6.37487 0.36213 0.91977 1.42432 1.48974 1.56827 1.85983 1.98517 2.22122 2.75158 3.03369 3.27097 3.53650 3.61973 3.70272 3.81882 4.08154 4.12814 4.39250 4.48814 4.57647 4.60843 4.62525 4.73799 4.87406 4.90340 4.96516 5.01873 5.08939 5.16065 5.21814 5.24270 5.32978 5.52975 5.79211 5.98276 6.00549 6.19177 6.32942 6.59984 6.88486 6.92284 7.06554 8.32236 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005169 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.225885 B = 5415.909944 C = 6567.655394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.105 3.895 3 F -0.212 7.212 4 C -0.140 4.140 5 C 0.089 3.911 6 N -0.615 5.615 7 C 0.578 3.422 8 O -0.585 6.585 9 C -0.123 4.123 10 C -0.190 4.190 11 C -0.113 4.113 12 C -0.163 4.163 13 C 0.073 3.927 14 C -0.489 4.489 15 H 0.086 0.914 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.983 3.017 19 H -0.265 1.265 20 H -0.270 1.270 21 H -0.254 1.254 22 C -0.200 4.200 23 C 0.082 3.918 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.289 0.711 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 4.572 -5.079 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.086 3.914 3 F -0.193 7.193 4 C -0.178 4.178 5 C -0.033 4.033 6 N -0.348 5.348 7 C 0.370 3.630 8 O -0.467 6.467 9 C -0.126 4.126 10 C -0.211 4.211 11 C -0.131 4.131 12 C -0.183 4.183 13 C 0.071 3.929 14 C -0.518 4.518 15 H 0.104 0.896 16 C -0.180 4.180 17 N -0.452 5.452 18 Si 0.804 3.196 19 H -0.190 1.190 20 H -0.194 1.194 21 H -0.177 1.177 22 C -0.219 4.219 23 C -0.040 4.040 24 H 0.094 0.906 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.114 0.886 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.245 4.372 -4.375 14.618 hybrid contribution 1.024 0.142 -0.035 1.035 sum -12.221 4.513 -4.410 13.754 Atomic orbital electron populations 1.22222 0.88923 1.05370 1.04839 1.22008 0.96685 0.77336 0.95343 1.92863 1.89879 1.39158 1.97368 1.23574 0.94842 1.01861 0.97512 1.22901 0.98738 1.01662 0.79989 1.48301 1.29906 1.44185 1.12396 1.18436 0.83006 0.77354 0.84171 1.90642 1.73038 1.62832 1.20165 1.19494 0.95681 0.98312 0.99093 1.20621 0.99117 0.98468 1.02859 1.20904 0.95206 0.99796 0.97219 1.21635 1.01322 0.96588 0.98716 1.17922 0.91414 0.91089 0.92510 1.19845 0.94605 1.26995 1.10347 0.89563 1.26781 0.97582 0.92405 1.01250 1.69849 1.08313 1.33540 1.33545 0.85179 0.78141 0.78911 0.77382 1.18958 1.19446 1.17705 1.21854 1.00169 1.01656 0.98238 1.22717 0.88615 0.95407 0.97267 0.90641 0.89154 0.88694 0.86438 0.86403 0.91083 0.89313 0.87749 0.86323 0.86826 0.90022 0.85247 0.88601 0.91772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.91 71.98 0.64 -1.32 16 2 C 0.10 2.12 1.60 -9.61 -0.02 2.11 16 3 F -0.21 -5.32 16.97 44.97 0.76 -4.56 16 4 C -0.14 -2.61 6.35 32.06 0.20 -2.40 16 5 C 0.09 2.53 4.96 86.93 0.43 2.96 16 6 N -0.62 -21.06 3.32 -814.69 -2.71 -23.77 16 7 C 0.58 25.12 7.67 86.80 0.67 25.79 16 8 O -0.58 -28.22 16.87 -3.87 -0.07 -28.29 16 9 C -0.12 -5.75 5.72 -20.14 -0.12 -5.86 16 10 C -0.19 -9.02 9.59 22.70 0.22 -8.80 16 11 C -0.11 -5.32 10.01 22.18 0.22 -5.09 16 12 C -0.16 -8.36 8.69 22.77 0.20 -8.16 16 13 C 0.07 3.76 5.59 -21.32 -0.12 3.64 16 14 C -0.49 -24.57 9.06 23.47 0.21 -24.36 16 15 H 0.09 4.04 7.90 -2.91 -0.02 4.02 16 16 C 0.03 1.66 5.18 85.26 0.44 2.10 16 17 N -0.83 -41.64 10.81 21.82 0.24 -41.41 16 18 Si 0.98 35.95 29.59 68.60 2.03 37.98 16 19 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 20 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 21 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.20 -9.36 7.84 23.01 0.18 -9.18 16 23 C 0.08 2.24 6.29 86.73 0.55 2.78 16 24 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.09 0.93 8.13 -2.39 -0.02 0.91 16 27 H 0.12 1.71 8.04 -2.39 -0.02 1.69 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 2.14 6.86 -2.39 -0.02 2.12 16 30 H 0.09 2.70 6.72 -2.38 -0.02 2.68 16 31 H 0.10 4.77 7.79 -2.91 -0.02 4.74 16 32 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.11 6.02 6.03 -2.91 -0.02 6.00 16 34 H 0.29 13.18 8.30 -92.71 -0.77 12.41 16 35 H 0.13 5.47 4.31 -2.91 -0.01 5.45 16 36 H 0.10 2.36 7.82 -2.39 -0.02 2.34 16 37 H 0.06 1.90 8.11 -2.39 -0.02 1.88 16 Total: -1.00 -64.04 308.82 5.05 -58.99 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 1.09 Total: 26.85 kcal Atomic # 6 Polarization: -29.51 SS G_CDS: 3.71 Total: -25.80 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -2.47 Total: -65.17 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.07 Total: -28.29 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.76 Total: -4.56 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Total: -64.04 5.05 -58.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336166325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.579 kcal (2) G-P(sol) polarization free energy of solvation -64.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds