Wall clock time and date at job start Mon Mar 30 2020 20:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39905 * 110.91087 * 2 1 4 4 C 1.55151 * 111.00489 * 123.90463 * 2 1 3 5 5 C 1.54324 * 102.93952 * 153.57947 * 4 2 1 6 6 N 1.47017 * 107.27220 * 337.80148 * 5 4 2 7 7 C 1.34780 * 125.64648 * 178.90556 * 6 5 4 8 8 O 1.21546 * 119.99606 * 174.92494 * 7 6 5 9 9 C 1.47878 * 120.00308 * 354.92590 * 7 6 5 10 10 C 1.39916 * 120.02973 * 188.16929 * 9 7 6 11 11 C 1.38327 * 120.36344 * 179.97438 * 10 9 7 12 12 C 1.37750 * 120.41187 * 0.02562 * 11 10 9 13 13 C 1.40750 * 120.03711 * 359.97438 * 12 11 10 14 14 C 1.41441 * 120.17823 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00112 * 214.78936 * 14 13 12 16 16 C 1.39946 * 119.99741 * 34.78956 * 14 13 12 17 17 N 1.30825 * 119.99904 * 355.51949 * 16 14 13 18 18 Si 1.86793 * 119.99769 * 175.52034 * 16 14 13 19 19 H 1.48501 * 109.47509 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47173 * 120.00080 * 18 16 14 21 21 H 1.48502 * 109.46997 * 239.99533 * 18 16 14 22 22 C 1.39001 * 120.02647 * 7.90233 * 9 7 6 23 23 C 1.47418 * 108.70414 * 358.94794 * 6 5 4 24 24 H 1.08997 * 109.46722 * 182.45030 * 1 2 3 25 25 H 1.09001 * 109.47005 * 302.44683 * 1 2 3 26 26 H 1.09001 * 109.46968 * 62.44507 * 1 2 3 27 27 H 1.08996 * 110.72393 * 35.20991 * 4 2 1 28 28 H 1.09002 * 110.71774 * 271.93719 * 4 2 1 29 29 H 1.09007 * 109.87779 * 218.38962 * 5 4 2 30 30 H 1.09001 * 109.88771 * 97.22632 * 5 4 2 31 31 H 1.08010 * 119.81764 * 0.02562 * 10 9 7 32 32 H 1.08005 * 119.79400 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.98169 * 180.02562 * 12 11 10 34 34 H 0.96999 * 119.99975 * 180.02562 * 17 16 14 35 35 H 1.08003 * 120.19986 * 359.97438 * 22 9 7 36 36 H 1.09001 * 110.37429 * 142.96588 * 23 6 5 37 37 H 1.09003 * 110.36654 * 265.28780 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 2.0294 1.3069 0.0000 4 6 2.0862 -0.8079 1.2021 5 6 3.4675 -1.2740 0.6959 6 7 3.4272 -1.2430 -0.7734 7 6 4.4482 -1.5601 -1.5941 8 8 4.2750 -1.5876 -2.7969 9 6 5.7790 -1.8747 -1.0313 10 6 6.8785 -2.0359 -1.8815 11 6 8.1265 -2.3297 -1.3624 12 6 8.3016 -2.4675 -0.0031 13 6 7.2074 -2.3089 0.8679 14 6 7.3838 -2.4492 2.2642 15 1 6.5982 -2.8797 2.8672 16 6 8.5766 -2.0300 2.8643 17 7 9.5617 -1.5900 2.1244 18 14 8.7621 -2.0989 4.7217 19 1 7.5134 -2.6306 5.3246 20 1 9.8991 -2.9871 5.0731 21 1 9.0210 -0.7332 5.2443 22 6 5.9398 -2.0049 0.3432 23 6 2.0854 -0.8065 -1.2004 24 1 -0.3633 -1.0267 0.0439 25 1 -0.3633 0.5514 0.8672 26 1 -0.3633 0.4754 -0.9111 27 1 1.4469 -1.6632 1.4209 28 1 2.1923 -0.1699 2.0796 29 1 3.6651 -2.2893 1.0399 30 1 4.2427 -0.5997 1.0598 31 1 6.7521 -1.9296 -2.9489 32 1 8.9690 -2.4519 -2.0271 33 1 9.2792 -2.6966 0.3947 34 1 10.3886 -1.2998 2.5403 35 1 5.0949 -1.8767 1.0036 36 1 2.1559 -0.1719 -2.0837 37 1 1.4519 -1.6703 -1.4025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336166326.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:14:21 Heat of formation + Delta-G solvation = -47.023027 kcal Electronic energy + Delta-G solvation = -21429.983261 eV Core-core repulsion = 18086.865543 eV Total energy + Delta-G solvation = -3343.117718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.67547 -39.77957 -37.36604 -36.75618 -33.62088 -32.73533 -30.25273 -29.78831 -29.57738 -26.59722 -25.31861 -23.86559 -21.63763 -20.88907 -20.44777 -19.39101 -17.43228 -16.48570 -16.20969 -15.58528 -15.49276 -15.11338 -14.80172 -14.58516 -14.56043 -13.45547 -13.35190 -13.08512 -12.99062 -12.71153 -12.56788 -12.49340 -12.38492 -11.92742 -11.70947 -11.43073 -11.27030 -11.12583 -10.88151 -10.73260 -10.50788 -10.41413 -10.11377 -9.46165 -9.26163 -9.09066 -8.40507 -7.66545 -7.38772 -6.68695 -4.49397 2.15050 2.71891 3.05310 3.08190 3.12094 3.24705 3.76224 3.92441 4.02244 4.27382 4.39444 4.57513 4.67302 5.03212 5.13835 5.25151 5.37875 5.43041 5.53482 5.61144 5.73115 5.78242 5.81177 5.94782 6.11158 6.16168 6.38091 6.48863 6.75405 6.92118 6.99399 7.21888 7.36948 7.59079 7.79856 7.92474 7.95341 8.11977 8.51603 8.71439 8.82799 8.84308 10.23568 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.018177 B = 0.005549 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.020326 B = 5044.782297 C = 6272.357749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 F -0.196 7.196 4 C -0.155 4.155 5 C 0.095 3.905 6 N -0.619 5.619 7 C 0.583 3.417 8 O -0.555 6.555 9 C -0.126 4.126 10 C -0.161 4.161 11 C -0.124 4.124 12 C -0.123 4.123 13 C 0.092 3.908 14 C -0.468 4.468 15 H 0.077 0.923 16 C 0.071 3.929 17 N -0.815 5.815 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.208 4.208 23 C 0.091 3.909 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.278 0.722 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.866 1.199 1.609 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.080 3.920 3 F -0.177 7.177 4 C -0.193 4.193 5 C -0.027 4.027 6 N -0.354 5.354 7 C 0.377 3.623 8 O -0.435 6.435 9 C -0.129 4.129 10 C -0.181 4.181 11 C -0.143 4.143 12 C -0.143 4.143 13 C 0.090 3.910 14 C -0.499 4.499 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.442 5.442 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.227 4.227 23 C -0.032 4.032 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.104 0.896 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.627 1.283 0.943 12.727 hybrid contribution 0.334 0.236 0.854 0.947 sum -12.293 1.519 1.797 12.516 Atomic orbital electron populations 1.22159 0.92073 1.03891 1.03765 1.22005 0.94341 0.78718 0.96966 1.92882 1.89218 1.38209 1.97380 1.23420 0.97158 1.00786 0.97916 1.22628 0.96899 1.02669 0.80533 1.48257 1.11587 1.68685 1.06824 1.18613 0.83640 0.74957 0.85087 1.90665 1.84014 1.53906 1.14867 1.19234 0.91071 1.08002 0.94609 1.20552 0.92185 1.07630 0.97717 1.20781 0.95456 1.02128 0.95886 1.21901 1.00942 1.00235 0.91228 1.17638 0.90435 0.89221 0.93674 1.19486 1.00659 1.37383 0.92364 0.90501 1.25845 0.94857 0.93013 1.00661 1.69724 1.04224 1.33172 1.37089 0.86159 0.79160 0.78600 0.82132 1.18586 1.19998 1.19988 1.22605 0.99964 1.06928 0.93217 1.22683 0.84846 0.98576 0.97097 0.90228 0.90864 0.91094 0.88777 0.88643 0.89438 0.89089 0.88005 0.88486 0.84964 0.91088 0.84952 0.89598 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.09 37.16 0.34 -0.93 16 2 C 0.10 1.15 1.66 -88.47 -0.15 1.00 16 3 F -0.20 -2.88 17.02 2.25 0.04 -2.84 16 4 C -0.15 -1.67 6.23 -24.90 -0.16 -1.82 16 5 C 0.10 1.41 4.87 -3.07 -0.01 1.40 16 6 N -0.62 -10.82 3.33 -175.66 -0.58 -11.41 16 7 C 0.58 12.64 7.81 -12.31 -0.10 12.55 16 8 O -0.56 -13.22 16.66 5.33 0.09 -13.13 16 9 C -0.13 -2.93 5.86 -105.04 -0.62 -3.54 16 10 C -0.16 -3.78 9.60 -38.92 -0.37 -4.15 16 11 C -0.12 -2.90 10.01 -39.73 -0.40 -3.29 16 12 C -0.12 -3.11 8.67 -38.81 -0.34 -3.45 16 13 C 0.09 2.34 5.55 -106.87 -0.59 1.75 16 14 C -0.47 -11.70 9.04 -37.72 -0.34 -12.04 16 15 H 0.08 1.82 7.85 -52.49 -0.41 1.40 16 16 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 17 N -0.81 -20.53 10.60 55.55 0.59 -19.94 16 18 Si 0.91 18.16 29.56 -169.99 -5.03 13.13 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.21 -4.78 8.34 -38.44 -0.32 -5.10 16 23 C 0.09 1.27 6.17 -2.53 -0.02 1.26 16 24 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.78 8.01 -51.93 -0.42 0.37 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.28 6.80 -51.93 -0.35 0.92 16 30 H 0.09 1.51 6.68 -51.93 -0.35 1.16 16 31 H 0.10 2.32 7.66 -52.48 -0.40 1.91 16 32 H 0.10 2.01 8.06 -52.48 -0.42 1.58 16 33 H 0.13 3.45 6.13 -52.48 -0.32 3.12 16 34 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 35 H 0.13 2.66 2.76 -57.72 -0.16 2.50 16 36 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 LS Contribution 307.69 15.07 4.64 4.64 Total: -1.00 -29.81 307.69 -7.91 -37.73 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -4.49 Total: 6.59 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.16 Total: -14.76 kcal Atomic # 7 Polarization: -31.36 SS G_CDS: 0.00 Total: -31.35 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.81 -7.91 -37.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336166326.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.297 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds