Wall clock time and date at job start Mon Mar 30 2020 20:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 H 1.09003 * 109.46927 * 305.00376 * 3 2 1 5 5 N 1.46499 * 109.47184 * 64.99608 * 3 2 1 6 6 C 1.34775 * 120.00469 * 275.00394 * 5 3 2 7 7 O 1.21591 * 119.99732 * 359.97438 * 6 5 3 8 8 C 1.47639 * 120.00322 * 179.97438 * 6 5 3 9 9 C 1.40019 * 119.89638 * 179.97438 * 8 6 5 10 10 C 1.36318 * 120.10482 * 180.23846 * 9 8 6 11 11 C 1.40884 * 119.89257 * 359.51625 * 10 9 8 12 12 C 1.41105 * 120.10547 * 180.21516 * 11 10 9 13 13 H 1.08007 * 120.00152 * 204.80045 * 12 11 10 14 14 C 1.40225 * 120.00158 * 24.80074 * 12 11 10 15 15 N 1.30652 * 119.99557 * 17.73396 * 14 12 11 16 16 Si 1.86800 * 120.00613 * 197.73349 * 14 12 11 17 17 H 1.48499 * 109.47055 * 89.99717 * 16 14 12 18 18 H 1.48498 * 109.47654 * 210.00290 * 16 14 12 19 19 H 1.48504 * 109.46638 * 330.00266 * 16 14 12 20 20 C 1.40892 * 119.79584 * 0.47930 * 11 10 9 21 21 C 1.36326 * 119.88776 * 359.75467 * 20 11 10 22 22 C 1.52992 * 109.47294 * 184.99770 * 3 2 1 23 23 H 1.09000 * 109.47252 * 184.99368 * 22 3 2 24 24 C 1.53006 * 109.46851 * 65.00202 * 22 3 2 25 25 O 1.42898 * 109.47573 * 305.00175 * 22 3 2 26 26 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47140 * 300.00396 * 1 2 3 28 28 H 1.09001 * 109.47293 * 60.00027 * 1 2 3 29 29 H 1.08995 * 109.46921 * 239.99763 * 2 1 3 30 30 H 1.08999 * 109.46939 * 119.99568 * 2 1 3 31 31 H 0.97003 * 119.99859 * 94.99778 * 5 3 2 32 32 H 1.07994 * 119.94660 * 359.95261 * 9 8 6 33 33 H 1.07995 * 120.05246 * 179.74740 * 10 9 8 34 34 H 0.97005 * 119.99384 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.05803 * 179.73191 * 20 11 10 36 36 H 1.07997 * 119.94151 * 179.97438 * 21 20 11 37 37 H 1.08998 * 109.47469 * 60.00133 * 24 22 3 38 38 H 1.09002 * 109.47024 * 180.02562 * 24 22 3 39 39 H 1.09000 * 109.47402 * 299.99821 * 24 22 3 40 40 H 0.96707 * 113.99647 * 59.99538 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3412 2.6326 0.4317 8 6 0.0443 3.3240 2.6286 9 6 -1.2207 3.9128 2.7457 10 6 -1.5841 4.5272 3.9070 11 6 -0.6884 4.5603 4.9939 12 6 -1.0617 5.1911 6.1997 13 1 -0.3030 5.5745 6.8660 14 6 -2.4176 5.3203 6.5329 15 7 -3.3108 4.5776 5.9348 16 14 -2.9470 6.5541 7.8317 17 1 -3.2374 7.8592 7.1854 18 1 -4.1676 6.0586 8.5170 19 1 -1.8566 6.7255 8.8251 20 6 0.5834 3.9665 4.8715 21 6 0.9397 3.3585 3.7045 22 6 3.5648 1.4443 -0.1257 23 1 3.9355 2.4655 -0.0367 24 6 3.9649 0.8735 -1.4877 25 8 4.1293 0.6404 0.9121 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2719 2.1231 1.9978 32 1 -1.9078 3.8841 1.9130 33 1 -2.5585 4.9845 3.9949 34 1 -4.2488 4.6667 6.1656 35 1 1.2750 3.9932 5.7006 36 1 1.9145 2.9034 3.6095 37 1 3.5344 1.4867 -2.2794 38 1 5.0513 0.8744 -1.5771 39 1 3.5942 -0.1476 -1.5769 40 1 3.8426 -0.2830 0.8943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456217841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:04 Heat of formation + Delta-G solvation = -88.810100 kcal Electronic energy + Delta-G solvation = -21398.081675 eV Core-core repulsion = 18176.612238 eV Total energy + Delta-G solvation = -3221.469437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74565 -38.05759 -36.94181 -34.42286 -33.87676 -32.12189 -30.82673 -30.02266 -29.42319 -26.61718 -25.29384 -23.06082 -21.99261 -20.98880 -20.16621 -19.55161 -17.54264 -17.29184 -16.37447 -15.75206 -15.59214 -15.32571 -14.80406 -14.16653 -13.98306 -13.91830 -13.23126 -13.01248 -12.72465 -12.66478 -12.35972 -12.20630 -12.07806 -11.92413 -11.79341 -11.35934 -11.30040 -11.23056 -10.93339 -10.76311 -10.65226 -10.56467 -10.16582 -10.01329 -9.51444 -9.32216 -8.91702 -8.49989 -7.67668 -7.54478 -7.00304 -4.58484 2.26032 2.93034 2.97204 2.99635 3.05551 3.71529 3.75788 3.89278 4.28449 4.56466 4.64921 4.81593 4.99300 5.16982 5.26126 5.40889 5.59492 5.60078 5.73027 5.74575 5.84038 6.02350 6.09128 6.13600 6.16022 6.30498 6.36707 6.70455 6.82346 6.86140 7.01740 7.09124 7.13265 7.45997 7.47171 7.64591 7.81503 7.90189 8.07826 8.30456 8.45215 8.65113 8.77683 9.12211 9.91644 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.003664 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.529245 B = 7639.406056 C = 8062.639045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.116 3.884 4 H 0.091 0.909 5 N -0.733 5.733 6 C 0.572 3.428 7 O -0.569 6.569 8 C -0.284 4.284 9 C -0.036 4.036 10 C -0.183 4.183 11 C 0.128 3.872 12 C -0.444 4.444 13 H 0.084 0.916 14 C 0.074 3.926 15 N -0.770 5.770 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.235 4.235 21 C -0.049 4.049 22 C 0.094 3.906 23 H 0.104 0.896 24 C -0.183 4.183 25 O -0.561 6.561 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.400 0.600 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.287 0.713 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.669 -5.905 -7.523 12.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.010 3.990 4 H 0.109 0.891 5 N -0.386 5.386 6 C 0.367 3.633 7 O -0.451 6.451 8 C -0.288 4.288 9 C -0.056 4.056 10 C -0.202 4.202 11 C 0.125 3.875 12 C -0.472 4.472 13 H 0.102 0.898 14 C -0.148 4.148 15 N -0.393 5.393 16 Si 0.738 3.262 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.255 4.255 21 C -0.068 4.068 22 C 0.035 3.965 23 H 0.122 0.878 24 C -0.241 4.241 25 O -0.367 6.367 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.235 0.765 32 H 0.118 0.882 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 8.146 -5.429 -8.032 12.663 hybrid contribution -0.321 -0.089 0.773 0.842 sum 7.825 -5.518 -7.258 12.015 Atomic orbital electron populations 1.21765 0.94296 1.00106 1.03848 1.22004 0.98062 0.96341 1.01297 1.21557 0.94131 0.93803 0.89503 0.89135 1.45892 1.17750 1.59284 1.15707 1.18548 0.80186 0.76496 0.88110 1.90639 1.51702 1.61515 1.41274 1.18932 0.98453 1.17048 0.94397 1.20475 0.93692 0.94596 0.96800 1.21010 1.01479 1.05533 0.92199 1.17783 0.90628 0.86753 0.92320 1.19844 0.92194 1.31189 1.03974 0.89759 1.26105 0.96544 0.94867 0.97247 1.69757 1.03510 1.30124 1.35902 0.86208 0.78911 0.80774 0.80356 1.18930 1.20029 1.18315 1.20677 0.99275 1.07959 0.97578 1.20391 0.96148 0.97002 0.93262 1.22227 0.91414 0.95838 0.87065 0.87844 1.22500 1.02315 1.01964 0.97348 1.86582 1.72187 1.24942 1.52985 0.94101 0.91532 0.92333 0.91598 0.91974 0.76451 0.88239 0.86219 0.90200 0.88532 0.89203 0.91288 0.91598 0.91810 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.51 37.16 0.32 -1.83 16 2 C -0.14 -1.65 4.89 -26.73 -0.13 -1.79 16 3 C 0.12 1.53 2.13 -67.93 -0.14 1.38 16 4 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 5 N -0.73 -11.91 4.96 -54.82 -0.27 -12.18 16 6 C 0.57 11.81 6.33 -12.42 -0.08 11.74 16 7 O -0.57 -12.93 13.46 5.29 0.07 -12.86 16 8 C -0.28 -6.48 5.89 -104.73 -0.62 -7.09 16 9 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 10 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 11 C 0.13 3.29 5.57 -106.80 -0.60 2.70 16 12 C -0.44 -11.14 9.04 -37.75 -0.34 -11.48 16 13 H 0.08 2.00 7.91 -52.48 -0.42 1.59 16 14 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 15 N -0.77 -18.95 10.96 55.56 0.61 -18.34 16 16 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 17 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.28 -5.17 7.11 56.52 0.40 -4.76 16 19 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 20 C -0.24 -5.51 9.73 -39.27 -0.38 -5.89 16 21 C -0.05 -1.06 9.47 -39.61 -0.38 -1.43 16 22 C 0.09 0.99 3.49 -26.73 -0.09 0.90 16 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.18 -1.49 9.30 37.16 0.35 -1.15 16 25 O -0.56 -6.09 12.98 -35.23 -0.46 -6.55 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.24 5.65 -51.93 -0.29 0.94 16 28 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 29 H 0.07 0.63 6.34 -51.93 -0.33 0.30 16 30 H 0.06 0.69 7.00 -51.93 -0.36 0.33 16 31 H 0.40 6.14 6.38 -40.82 -0.26 5.88 16 32 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 33 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 34 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 35 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 40 H 0.37 3.02 7.31 45.56 0.33 3.36 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -28.33 322.47 -7.89 -36.23 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -4.77 Total: 14.94 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -2.90 Total: -18.60 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.34 Total: -30.52 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.39 Total: -19.40 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.33 -7.89 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456217841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.584 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds