Wall clock time and date at job start Mon Mar 30 2020 20:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47298 * 2 1 4 4 H 1.09003 * 109.46927 * 305.00376 * 3 2 1 5 5 N 1.46499 * 109.47184 * 64.99608 * 3 2 1 6 6 C 1.34775 * 120.00469 * 275.00394 * 5 3 2 7 7 O 1.21591 * 119.99732 * 359.97438 * 6 5 3 8 8 C 1.47639 * 120.00322 * 179.97438 * 6 5 3 9 9 C 1.40019 * 119.89638 * 179.97438 * 8 6 5 10 10 C 1.36318 * 120.10482 * 180.23846 * 9 8 6 11 11 C 1.40884 * 119.89257 * 359.51625 * 10 9 8 12 12 C 1.41105 * 120.10547 * 180.21516 * 11 10 9 13 13 H 1.08007 * 120.00152 * 204.80045 * 12 11 10 14 14 C 1.40225 * 120.00158 * 24.80074 * 12 11 10 15 15 N 1.30652 * 119.99557 * 17.73396 * 14 12 11 16 16 Si 1.86800 * 120.00613 * 197.73349 * 14 12 11 17 17 H 1.48499 * 109.47055 * 89.99717 * 16 14 12 18 18 H 1.48498 * 109.47654 * 210.00290 * 16 14 12 19 19 H 1.48504 * 109.46638 * 330.00266 * 16 14 12 20 20 C 1.40892 * 119.79584 * 0.47930 * 11 10 9 21 21 C 1.36326 * 119.88776 * 359.75467 * 20 11 10 22 22 C 1.52992 * 109.47294 * 184.99770 * 3 2 1 23 23 H 1.09000 * 109.47252 * 184.99368 * 22 3 2 24 24 C 1.53006 * 109.46851 * 65.00202 * 22 3 2 25 25 O 1.42898 * 109.47573 * 305.00175 * 22 3 2 26 26 H 1.08994 * 109.47419 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47140 * 300.00396 * 1 2 3 28 28 H 1.09001 * 109.47293 * 60.00027 * 1 2 3 29 29 H 1.08995 * 109.46921 * 239.99763 * 2 1 3 30 30 H 1.08999 * 109.46939 * 119.99568 * 2 1 3 31 31 H 0.97003 * 119.99859 * 94.99778 * 5 3 2 32 32 H 1.07994 * 119.94660 * 359.95261 * 9 8 6 33 33 H 1.07995 * 120.05246 * 179.74740 * 10 9 8 34 34 H 0.97005 * 119.99384 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.05803 * 179.73191 * 20 11 10 36 36 H 1.07997 * 119.94151 * 179.97438 * 21 20 11 37 37 H 1.08998 * 109.47469 * 60.00133 * 24 22 3 38 38 H 1.09002 * 109.47024 * 180.02562 * 24 22 3 39 39 H 1.09000 * 109.47402 * 299.99821 * 24 22 3 40 40 H 0.96707 * 113.99647 * 59.99538 * 25 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4351 2.6644 1.3669 7 8 -0.3412 2.6326 0.4317 8 6 0.0443 3.3240 2.6286 9 6 -1.2207 3.9128 2.7457 10 6 -1.5841 4.5272 3.9070 11 6 -0.6884 4.5603 4.9939 12 6 -1.0617 5.1911 6.1997 13 1 -0.3030 5.5745 6.8660 14 6 -2.4176 5.3203 6.5329 15 7 -3.3108 4.5776 5.9348 16 14 -2.9470 6.5541 7.8317 17 1 -3.2374 7.8592 7.1854 18 1 -4.1676 6.0586 8.5170 19 1 -1.8566 6.7255 8.8251 20 6 0.5834 3.9665 4.8715 21 6 0.9397 3.3585 3.7045 22 6 3.5648 1.4443 -0.1257 23 1 3.9355 2.4655 -0.0367 24 6 3.9649 0.8735 -1.4877 25 8 4.1293 0.6404 0.9121 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2719 2.1231 1.9978 32 1 -1.9078 3.8841 1.9130 33 1 -2.5585 4.9845 3.9949 34 1 -4.2488 4.6667 6.1656 35 1 1.2750 3.9932 5.7006 36 1 1.9145 2.9034 3.6095 37 1 3.5344 1.4867 -2.2794 38 1 5.0513 0.8744 -1.5771 39 1 3.5942 -0.1476 -1.5769 40 1 3.8426 -0.2830 0.8943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456217841.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:16:04 Heat of formation + Delta-G solvation = -107.493001 kcal Electronic energy + Delta-G solvation = -21398.891826 eV Core-core repulsion = 18176.612238 eV Total energy + Delta-G solvation = -3222.279588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14428 -39.45451 -38.50834 -35.69559 -35.60374 -33.47419 -31.85245 -31.67253 -31.21118 -28.10626 -26.71068 -24.09945 -23.61476 -22.76672 -21.32316 -21.17870 -19.35989 -18.63285 -17.70495 -17.07400 -16.85679 -16.64851 -16.00162 -15.73462 -15.51045 -15.21408 -14.84502 -14.55024 -14.20253 -13.98259 -13.75178 -13.60619 -13.22530 -13.14339 -12.95167 -12.90524 -12.83647 -12.58825 -12.38347 -12.29535 -11.76739 -11.73127 -11.59654 -11.36070 -11.13254 -11.08223 -10.57503 -9.89158 -9.56785 -9.40379 -8.78930 -6.48373 0.46473 1.14834 1.37603 1.43368 1.52897 2.13693 2.19223 2.40709 2.80867 3.47551 3.68335 3.70411 3.89225 4.16270 4.21162 4.26884 4.33836 4.40474 4.43628 4.56112 4.75422 4.80642 4.91728 4.96937 4.99840 5.02267 5.14316 5.20143 5.25115 5.26866 5.33192 5.46603 5.58699 5.70735 5.79646 5.97094 6.02059 6.20812 6.56070 6.76923 6.77461 6.81236 6.89998 7.53224 8.16303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036856 B = 0.003664 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.529245 B = 7639.406056 C = 8062.639045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.132 4.132 3 C 0.112 3.888 4 H 0.074 0.926 5 N -0.717 5.717 6 C 0.573 3.427 7 O -0.595 6.595 8 C -0.293 4.293 9 C -0.050 4.050 10 C -0.203 4.203 11 C 0.101 3.899 12 C -0.474 4.474 13 H 0.091 0.909 14 C 0.034 3.966 15 N -0.804 5.804 16 Si 0.990 3.010 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.251 1.251 20 C -0.247 4.247 21 C -0.039 4.039 22 C 0.104 3.896 23 H 0.097 0.903 24 C -0.178 4.178 25 O -0.570 6.570 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.406 0.594 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.295 0.705 35 H 0.114 0.886 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.754 -6.864 -7.484 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.170 4.170 3 C 0.007 3.993 4 H 0.092 0.908 5 N -0.369 5.369 6 C 0.366 3.634 7 O -0.479 6.479 8 C -0.297 4.297 9 C -0.069 4.069 10 C -0.222 4.222 11 C 0.098 3.902 12 C -0.502 4.502 13 H 0.109 0.891 14 C -0.185 4.185 15 N -0.428 5.428 16 Si 0.809 3.191 17 H -0.187 1.187 18 H -0.191 1.191 19 H -0.175 1.175 20 C -0.267 4.267 21 C -0.058 4.058 22 C 0.045 3.955 23 H 0.115 0.885 24 C -0.236 4.236 25 O -0.379 6.379 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.243 0.757 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 10.274 -6.424 -8.005 14.523 hybrid contribution -0.933 0.114 0.660 1.149 sum 9.341 -6.311 -7.345 13.455 Atomic orbital electron populations 1.21709 0.96793 1.00340 1.01036 1.21990 0.95587 0.95745 1.03684 1.21831 0.96276 0.94066 0.87149 0.90779 1.45755 1.16016 1.57964 1.17139 1.18267 0.81406 0.76758 0.86974 1.90626 1.52862 1.62565 1.41829 1.19263 0.97934 1.16509 0.96024 1.20547 0.94806 0.95286 0.96303 1.20934 1.01303 1.06890 0.93092 1.18135 0.91754 0.87683 0.92675 1.20150 0.93420 1.32347 1.04251 0.89093 1.27022 0.96012 0.96153 0.99312 1.69810 1.04205 1.31429 1.37362 0.85077 0.78738 0.77797 0.77439 1.18650 1.19120 1.17465 1.20940 0.98873 1.07964 0.98885 1.20689 0.97329 0.95816 0.91947 1.22103 0.88853 0.96033 0.88533 0.88498 1.22456 1.02967 1.02597 0.95537 1.86569 1.72120 1.26025 1.53150 0.92332 0.95518 0.93943 0.88154 0.90530 0.75667 0.89048 0.87885 0.89405 0.86819 0.85284 0.91056 0.90681 0.90369 0.76289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.13 8.51 71.98 0.61 -3.52 16 2 C -0.13 -2.78 4.89 30.59 0.15 -2.63 16 3 C 0.11 2.71 2.13 44.99 0.10 2.81 16 4 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 5 N -0.72 -22.25 4.96 -445.60 -2.21 -24.46 16 6 C 0.57 23.73 6.33 86.73 0.55 24.28 16 7 O -0.59 -27.64 13.46 -4.00 -0.05 -27.70 16 8 C -0.29 -13.52 5.89 -19.93 -0.12 -13.64 16 9 C -0.05 -2.57 9.52 22.25 0.21 -2.36 16 10 C -0.20 -10.94 8.63 22.47 0.19 -10.75 16 11 C 0.10 5.31 5.57 -21.28 -0.12 5.19 16 12 C -0.47 -24.24 9.04 23.46 0.21 -24.03 16 13 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 14 C 0.03 1.61 5.14 85.35 0.44 2.04 16 15 N -0.80 -40.78 10.96 21.87 0.24 -40.54 16 16 Si 0.99 35.86 29.60 68.60 2.03 37.89 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 19 H -0.25 -8.70 7.11 99.48 0.71 -8.00 16 20 C -0.25 -11.55 9.73 22.47 0.22 -11.34 16 21 C -0.04 -1.65 9.47 22.25 0.21 -1.44 16 22 C 0.10 1.89 3.49 30.59 0.11 2.00 16 23 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 24 C -0.18 -2.26 9.30 71.98 0.67 -1.59 16 25 O -0.57 -10.35 12.98 -148.98 -1.93 -12.28 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 0.98 5.65 -2.39 -0.01 0.96 16 28 H 0.04 1.34 7.84 -2.39 -0.02 1.32 16 29 H 0.10 1.49 6.34 -2.39 -0.02 1.47 16 30 H 0.08 1.43 7.00 -2.39 -0.02 1.42 16 31 H 0.41 11.50 6.38 -92.71 -0.59 10.91 16 32 H 0.09 4.70 7.63 -2.91 -0.02 4.68 16 33 H 0.10 5.78 6.16 -2.91 -0.02 5.76 16 34 H 0.29 13.40 8.29 -92.70 -0.77 12.63 16 35 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.13 4.34 6.37 -2.91 -0.02 4.33 16 37 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.78 6.46 -2.39 -0.02 0.76 16 40 H 0.39 4.65 7.31 -74.05 -0.54 4.11 16 Total: -1.00 -63.98 322.47 1.44 -62.54 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.06 Total: 39.53 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 3.43 Total: -34.98 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -1.97 Total: -65.00 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.99 Total: -39.98 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -63.98 1.44 -62.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456217841.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.954 kcal (2) G-P(sol) polarization free energy of solvation -63.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds