Wall clock time and date at job start Mon Mar 30 2020 20:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 C 1.46511 * 119.99704 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00396 * 180.02562 * 11 9 8 14 14 C 1.50705 * 109.47139 * 89.99515 * 13 11 9 15 15 H 1.07999 * 119.99832 * 0.02562 * 14 13 11 16 16 C 1.37872 * 119.99904 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99946 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00029 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47200 * 90.00142 * 18 16 14 20 20 H 1.48509 * 109.47079 * 209.99941 * 18 16 14 21 21 H 1.48500 * 109.47250 * 329.99832 * 18 16 14 22 22 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 23 23 C 1.38149 * 120.05738 * 0.02562 * 22 6 5 24 24 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 25 25 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 26 26 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 30 30 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 31 31 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 32 32 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 33 33 H 1.08995 * 109.47028 * 90.00350 * 12 11 9 34 34 H 1.08995 * 109.46702 * 210.00080 * 12 11 9 35 35 H 1.09000 * 109.46949 * 330.00208 * 12 11 9 36 36 H 1.09002 * 109.47118 * 209.99825 * 13 11 9 37 37 H 1.09006 * 109.47022 * 329.99971 * 13 11 9 38 38 H 0.96999 * 119.99825 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.97210 * 179.97438 * 22 6 5 40 40 H 1.07998 * 120.03203 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 6 4.8884 6.7779 -3.8599 13 6 5.8829 8.7305 -2.5804 14 6 7.3768 8.5319 -2.5769 15 1 7.7888 7.5336 -2.5801 16 6 8.2175 9.6246 -2.5696 17 7 9.5212 9.4513 -2.5671 18 14 7.5048 11.3514 -2.5633 19 1 7.3124 11.8024 -1.1616 20 1 8.4386 12.2749 -3.2566 21 1 6.1970 11.3497 -3.2668 22 6 1.9209 3.6048 0.0021 23 6 1.2913 2.3751 0.0016 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0208 0.3800 -0.0014 28 1 5.1344 2.5751 0.0000 29 1 3.3560 5.7444 0.5232 30 1 4.9419 4.9365 0.5259 31 1 4.8524 4.7525 -1.9454 32 1 3.2663 5.5605 -1.9480 33 1 3.8913 7.0839 -4.1765 34 1 5.6161 7.0725 -4.6160 35 1 4.9134 5.6956 -3.7336 36 1 5.5930 9.2913 -3.4690 37 1 5.5880 9.2842 -1.6889 38 1 10.1127 10.2201 -2.5615 39 1 1.3340 4.5115 0.0038 40 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019833708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:39 Heat of formation + Delta-G solvation = -52.917078 kcal Electronic energy + Delta-G solvation = -20606.078097 eV Core-core repulsion = 17386.165099 eV Total energy + Delta-G solvation = -3219.912998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32554 -39.12149 -37.80900 -34.94292 -33.43887 -32.47164 -31.22253 -29.67958 -28.34006 -27.40323 -25.89338 -24.28583 -22.78101 -22.03880 -20.79092 -18.35133 -18.34153 -16.95222 -16.54651 -16.43292 -15.98037 -15.32358 -15.18329 -15.12205 -14.34234 -14.18178 -13.88588 -13.62532 -13.26719 -12.99098 -12.74303 -12.38282 -12.24151 -12.10444 -12.04278 -11.96574 -11.45043 -11.36432 -11.09719 -11.01360 -10.88805 -10.68179 -10.49950 -10.13137 -9.53042 -9.13202 -8.99778 -8.57736 -8.18891 -7.67564 -6.07536 -4.06142 1.21258 1.28688 3.04389 3.30081 3.36054 3.37763 3.39214 3.59605 3.93370 4.40701 4.59301 4.70928 4.81121 4.82899 4.83051 5.13493 5.17282 5.22426 5.25505 5.28501 5.38248 5.44568 5.53201 5.61973 5.81277 5.85213 5.88546 6.06621 6.14488 6.19366 6.23941 6.32769 6.62889 6.65010 6.71946 6.96338 7.19415 7.36356 7.62633 8.28058 8.48667 8.94503 9.02008 9.52914 11.05924 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.002946 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.540140 B = 9502.709799 C = 9604.079093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.149 4.149 5 C -0.076 4.076 6 C -0.110 4.110 7 C -0.062 4.062 8 C -0.132 4.132 9 C 0.505 3.495 10 O -0.543 6.543 11 N -0.600 5.600 12 C 0.084 3.916 13 C 0.214 3.786 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.078 4.078 23 C -0.207 4.207 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.125 0.875 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.946 -16.403 1.769 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.071 3.929 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.110 4.110 7 C -0.100 4.100 8 C -0.172 4.172 9 C 0.292 3.708 10 O -0.421 6.421 11 N -0.332 5.332 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.566 4.566 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.096 4.096 23 C -0.225 4.225 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.541 -16.189 2.305 24.722 hybrid contribution -0.441 0.995 -0.187 1.105 sum -18.982 -15.193 2.118 24.406 Atomic orbital electron populations 1.23026 0.78591 1.03757 1.01331 1.86056 1.21235 1.27169 1.88976 1.19031 0.92411 0.84029 0.97458 1.20429 0.91294 0.98682 1.06368 1.20968 1.00189 0.90898 0.97352 1.19939 0.93501 0.95517 1.02077 1.20300 1.01458 0.92241 0.96021 1.21667 1.01464 0.95683 0.98361 1.20424 0.79537 0.86884 0.83980 1.90664 1.54513 1.66212 1.30668 1.47861 1.58368 1.21950 1.05010 1.21659 1.00035 0.97265 0.87082 1.19659 0.93467 0.80216 0.97294 1.21336 0.88746 0.95306 1.51235 0.90804 1.24871 0.94709 0.99055 0.94477 1.69902 1.02339 1.30824 1.50611 0.86835 0.79210 0.84670 0.78868 1.19908 1.21086 1.19092 1.20885 0.94089 0.96996 0.97603 1.21196 0.99822 0.92380 1.09133 0.92730 0.92699 0.88397 0.85304 0.85045 0.90369 0.90033 0.89259 0.89644 0.93733 0.90648 0.92052 0.95317 0.94579 0.92579 0.85712 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.27 10.50 -19.43 -0.20 -3.48 16 3 C 0.12 1.27 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 5 C -0.08 -0.86 9.69 -39.61 -0.38 -1.24 16 6 C -0.11 -1.30 5.14 -104.60 -0.54 -1.84 16 7 C -0.06 -0.85 4.63 -27.88 -0.13 -0.98 16 8 C -0.13 -1.88 4.23 -27.88 -0.12 -2.00 16 9 C 0.50 10.19 7.67 -10.99 -0.08 10.11 16 10 O -0.54 -13.28 15.56 5.56 0.09 -13.19 16 11 N -0.60 -12.43 2.86 -182.95 -0.52 -12.96 16 12 C 0.08 1.28 10.24 59.85 0.61 1.90 16 13 C 0.21 5.31 4.23 -5.19 -0.02 5.29 16 14 C -0.53 -15.33 9.94 -34.44 -0.34 -15.67 16 15 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 19 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 22 C -0.08 -0.83 9.69 -39.60 -0.38 -1.21 16 23 C -0.21 -2.07 9.04 -39.43 -0.36 -2.43 16 24 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 25 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 31 H 0.09 1.17 7.40 -51.93 -0.38 0.79 16 32 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 36 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 37 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.13 0.96 6.30 -52.49 -0.33 0.63 16 LS Contribution 336.09 15.07 5.06 5.06 Total: -1.00 -35.14 336.09 -6.93 -42.06 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.95 Total: -1.51 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.51 Total: -5.94 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.25 Total: -40.10 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -0.12 Total: -16.67 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.14 -6.93 -42.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.853 kcal (2) G-P(sol) polarization free energy of solvation -35.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds