Wall clock time and date at job start Mon Mar 30 2020 20:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47553 * 2 1 4 4 C 1.50699 * 109.47310 * 120.00464 * 2 1 3 5 5 H 1.07992 * 120.00482 * 119.99670 * 4 2 1 6 6 C 1.37885 * 119.99497 * 300.00382 * 4 2 1 7 7 N 1.31513 * 120.00006 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99592 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47164 * 89.99749 * 8 6 4 10 10 H 1.48502 * 109.46790 * 209.99584 * 8 6 4 11 11 H 1.48500 * 109.47299 * 329.99295 * 8 6 4 12 12 N 1.46904 * 109.47263 * 240.00195 * 2 1 3 13 13 C 1.46899 * 110.99986 * 85.00165 * 12 2 1 14 14 C 1.50701 * 109.47336 * 180.02562 * 13 12 2 15 15 C 1.38388 * 120.14135 * 260.00100 * 14 13 12 16 16 C 1.38209 * 120.21895 * 180.02562 * 15 14 13 17 17 C 1.38388 * 120.21765 * 359.95470 * 16 15 14 18 18 C 1.38419 * 119.70521 * 359.97438 * 17 16 15 19 19 C 1.38420 * 120.14255 * 79.97530 * 14 13 12 20 20 O 1.36460 * 120.31371 * 0.09815 * 19 14 13 21 21 C 1.42912 * 115.92194 * 248.26880 * 20 19 14 22 22 C 1.52068 * 110.73158 * 275.59406 * 21 20 19 23 23 C 1.52059 * 112.37599 * 64.86222 * 22 21 20 24 24 O 1.36471 * 120.32082 * 180.02562 * 18 17 16 25 25 H 1.08998 * 109.47524 * 300.00051 * 1 2 3 26 26 H 1.09003 * 109.46854 * 59.99925 * 1 2 3 27 27 H 1.09004 * 109.47297 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99480 * 180.02562 * 7 6 4 29 29 H 1.00901 * 111.00166 * 208.95594 * 12 2 1 30 30 H 1.09001 * 109.47048 * 60.00069 * 13 12 2 31 31 H 1.08998 * 109.47461 * 299.99970 * 13 12 2 32 32 H 1.08001 * 119.88929 * 0.02562 * 15 14 13 33 33 H 1.08003 * 119.89180 * 179.97438 * 16 15 14 34 34 H 1.07997 * 120.14750 * 179.97438 * 17 16 15 35 35 H 1.09000 * 109.21354 * 35.94467 * 21 20 19 36 36 H 1.09003 * 109.21861 * 155.32552 * 21 20 19 37 37 H 1.08998 * 108.94075 * 304.09113 * 22 21 20 38 38 H 1.08996 * 108.86450 * 185.58295 * 22 21 20 39 39 H 1.09002 * 109.21622 * 174.77469 * 23 22 21 40 40 H 1.09003 * 109.21481 * 55.39855 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6531 -1.5885 1.1313 6 6 1.6991 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3212 -1.1206 4.0078 9 1 3.6295 -0.5461 4.4123 10 1 1.3429 -0.9495 5.1119 11 1 2.4856 -2.5664 3.7118 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5874 -0.5217 -3.5561 15 6 3.9121 -0.4070 -3.9395 16 6 4.3768 -1.0885 -5.0485 17 6 3.5205 -1.8907 -5.7823 18 6 2.1952 -2.0087 -5.4005 19 6 1.7282 -1.3233 -4.2876 20 8 0.4192 -1.4440 -3.9213 21 6 0.0243 -2.7255 -3.4273 22 6 -0.3259 -3.6602 -4.5745 23 6 0.8752 -3.9743 -5.4525 24 8 1.3400 -2.7967 -6.1147 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7093 1.1615 3.4844 29 1 2.9173 -1.1205 -1.0288 30 1 2.7589 1.0462 -2.1181 31 1 1.0871 0.6164 -2.5526 32 1 4.5851 0.2170 -3.3703 33 1 5.4116 -0.9949 -5.3433 34 1 3.8847 -2.4224 -6.6489 35 1 0.8432 -3.1555 -2.8505 36 1 -0.8463 -2.6085 -2.7819 37 1 -1.0986 -3.1950 -5.1865 38 1 -0.7162 -4.5913 -4.1638 39 1 0.5902 -4.7165 -6.1982 40 1 1.6766 -4.3775 -4.8333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663172084.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:35 Heat of formation + Delta-G solvation = -50.515545 kcal Electronic energy + Delta-G solvation = -22059.424492 eV Core-core repulsion = 18839.615632 eV Total energy + Delta-G solvation = -3219.808860 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71383 -37.80879 -37.20870 -35.69762 -32.87462 -32.75861 -30.87896 -28.92153 -28.10258 -26.40081 -25.36873 -24.32289 -22.00127 -21.87965 -20.79867 -19.72893 -18.14763 -16.97964 -16.87733 -16.24027 -15.33360 -15.19041 -14.98898 -14.89383 -14.17046 -13.89497 -13.81528 -13.47999 -13.21740 -13.10360 -12.64350 -12.23044 -11.88706 -11.81356 -11.57629 -11.15529 -10.99161 -10.89681 -10.78518 -10.61982 -10.29667 -10.25154 -10.11416 -10.00796 -9.63417 -8.85368 -8.52954 -8.46120 -8.29633 -7.26782 -6.03359 -4.09987 1.25339 1.34605 3.27860 3.34782 3.37982 3.41831 3.65665 4.12839 4.39181 4.70719 4.76257 4.94820 5.02813 5.12891 5.27710 5.31080 5.37188 5.42749 5.47309 5.53111 5.64637 5.68901 5.87300 5.96928 6.03926 6.09959 6.34020 6.38614 6.47650 6.69313 6.72711 6.92810 7.17540 7.24732 7.29236 7.51185 7.76919 7.80842 7.89839 8.27496 8.38168 8.65923 9.00730 9.55911 11.02814 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.004728 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.720205 B = 5920.169114 C = 6432.010109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.101 3.899 14 C -0.068 4.068 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.056 3.944 19 C 0.091 3.909 20 O -0.310 6.310 21 C 0.070 3.930 22 C -0.188 4.188 23 C 0.061 3.939 24 O -0.323 6.323 25 H 0.079 0.921 26 H 0.006 0.994 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.328 0.672 30 H 0.029 0.971 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -7.202 -15.209 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.556 4.556 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.028 4.028 14 C -0.069 4.069 15 C -0.129 4.129 16 C -0.134 4.134 17 C -0.145 4.145 18 C 0.013 3.987 19 C 0.046 3.954 20 O -0.225 6.225 21 C -0.004 4.004 22 C -0.226 4.226 23 C -0.013 4.013 24 O -0.240 6.240 25 H 0.097 0.903 26 H 0.025 0.975 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.145 0.855 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.711 -7.163 -15.395 17.065 hybrid contribution 1.114 -0.181 1.274 1.702 sum 2.824 -7.344 -14.120 16.165 Atomic orbital electron populations 1.21677 0.97758 0.99195 0.99359 1.19108 0.92702 0.92303 0.85333 0.98174 1.21245 1.31445 1.12500 0.90443 0.92323 1.24914 0.95042 0.95010 0.98997 1.69902 1.36553 1.22872 1.23438 0.86537 0.78478 0.80026 0.82576 1.20774 1.21209 1.19921 1.60773 1.31788 1.32860 1.05537 1.20784 1.00411 0.93045 0.88536 1.20139 0.92208 0.98397 0.96134 1.21093 0.94656 1.00031 0.97139 1.20973 0.99506 0.97414 0.95542 1.20977 0.91043 1.01293 1.01214 1.19183 0.89855 0.96094 0.93603 1.18936 0.85144 0.98194 0.93152 1.86321 1.21270 1.32810 1.82148 1.22494 1.01474 0.82470 0.94001 1.22523 0.99788 1.01251 0.98994 1.22597 0.95973 0.86031 0.96740 1.86320 1.61948 1.35294 1.40418 0.90252 0.97524 0.95162 0.92931 0.85505 0.95283 0.90255 0.85386 0.85497 0.85392 0.91782 0.87993 0.90255 0.89520 0.88385 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.19 37.15 0.34 -2.69 16 2 C 0.21 5.36 2.60 -68.87 -0.18 5.18 16 3 H 0.00 0.02 7.80 -51.93 -0.40 -0.39 16 4 C -0.52 -14.04 8.59 -34.44 -0.30 -14.34 16 5 H 0.06 1.57 7.62 -52.49 -0.40 1.17 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.30 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.68 -14.40 6.29 -109.22 -0.69 -15.08 16 13 C 0.10 1.91 5.29 -4.98 -0.03 1.89 16 14 C -0.07 -1.12 5.41 -104.50 -0.56 -1.69 16 15 C -0.11 -1.54 9.67 -39.54 -0.38 -1.92 16 16 C -0.12 -1.40 10.04 -39.54 -0.40 -1.80 16 17 C -0.13 -1.62 10.01 -39.46 -0.39 -2.02 16 18 C 0.06 0.85 5.73 -39.31 -0.23 0.63 16 19 C 0.09 1.52 5.70 -39.31 -0.22 1.30 16 20 O -0.31 -5.44 9.42 -36.66 -0.35 -5.79 16 21 C 0.07 1.03 6.51 36.68 0.24 1.27 16 22 C -0.19 -2.13 5.92 -27.68 -0.16 -2.30 16 23 C 0.06 0.69 6.51 36.68 0.24 0.93 16 24 O -0.32 -4.69 10.16 -36.69 -0.37 -5.06 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 26 H 0.01 0.14 7.45 -51.93 -0.39 -0.25 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.85 8.22 -39.29 -0.32 6.53 16 30 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.08 1.60 7.16 -51.93 -0.37 1.23 16 32 H 0.13 1.59 8.04 -52.49 -0.42 1.16 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 36 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -29.87 325.81 -8.97 -38.84 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.95 Total: 4.73 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.13 Total: -13.94 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.06 Total: -39.76 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -0.72 Total: -10.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.87 -8.97 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663172084.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.671 kcal (2) G-P(sol) polarization free energy of solvation -29.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds