Wall clock time and date at job start Mon Mar 30 2020 20:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21308 * 120.00088 * 2 1 4 4 C 1.46757 * 120.00021 * 180.02562 * 2 1 3 5 5 C 1.40109 * 120.09413 * 179.97438 * 4 2 1 6 6 C 1.36542 * 119.90135 * 180.02562 * 5 4 2 7 7 C 1.39323 * 120.09818 * 359.97438 * 6 5 4 8 8 N 1.38881 * 119.90637 * 179.97438 * 7 6 5 9 9 C 1.46503 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.46500 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.46998 * 89.99921 * 10 8 7 12 12 O 1.42903 * 109.47256 * 65.00196 * 11 10 8 13 13 C 1.42891 * 113.99823 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47131 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37881 * 120.00302 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99901 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00127 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47041 * 59.99953 * 18 16 14 20 20 H 1.48500 * 109.47405 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47194 * 300.00328 * 18 16 14 22 22 C 1.39316 * 120.18606 * 0.25841 * 7 6 5 23 23 C 1.36542 * 120.10088 * 359.47988 * 22 7 6 24 24 H 1.08998 * 109.46966 * 269.99327 * 1 2 3 25 25 H 1.09002 * 109.47142 * 29.99644 * 1 2 3 26 26 H 1.09003 * 109.47281 * 150.00224 * 1 2 3 27 27 H 1.07992 * 120.04791 * 359.97438 * 5 4 2 28 28 H 1.07998 * 119.95479 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47177 * 270.00099 * 9 8 7 30 30 H 1.09002 * 109.47019 * 29.99858 * 9 8 7 31 31 H 1.09001 * 109.47429 * 150.00026 * 9 8 7 32 32 H 1.08993 * 109.47452 * 329.99999 * 10 8 7 33 33 H 1.09000 * 109.47175 * 209.99789 * 10 8 7 34 34 H 1.09004 * 109.46579 * 184.99634 * 11 10 8 35 35 H 1.08992 * 109.47046 * 304.99817 * 11 10 8 36 36 H 1.09007 * 109.47137 * 299.99376 * 13 12 11 37 37 H 1.08997 * 109.47704 * 59.99595 * 13 12 11 38 38 H 0.96993 * 119.99882 * 179.97438 * 17 16 14 39 39 H 1.08000 * 119.94571 * 179.71878 * 22 7 6 40 40 H 1.07993 * 120.05195 * 180.23200 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2408 -1.2710 -0.0006 5 6 3.6419 -1.2732 -0.0011 6 6 4.3206 -2.4580 -0.0022 7 6 3.6220 -3.6634 -0.0022 8 7 4.3164 -4.8662 -0.0038 9 6 5.7815 -4.8663 -0.0061 10 6 3.5839 -6.1349 -0.0044 11 6 3.3278 -6.5753 -1.4471 12 8 4.5738 -6.8579 -2.0873 13 6 4.4463 -7.2795 -3.4466 14 6 5.8140 -7.5480 -4.0196 15 1 6.6928 -7.4101 -3.4071 16 6 5.9436 -7.9698 -5.3259 17 7 4.8736 -8.1383 -6.0717 18 14 7.6390 -8.3020 -6.0363 19 1 8.3061 -9.3684 -5.2471 20 1 7.5066 -8.7403 -7.4490 21 1 8.4521 -7.0608 -5.9778 22 6 2.2289 -3.6657 -0.0065 23 6 1.5422 -2.4855 -0.0001 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 4.1842 -0.3393 -0.0015 28 1 5.4006 -2.4608 -0.0030 29 1 6.1432 -4.8658 -1.0343 30 1 6.1456 -3.9765 0.5076 31 1 6.1456 -5.7565 0.5068 32 1 2.6320 -6.0051 0.5103 33 1 4.1734 -6.8951 0.5083 34 1 2.7071 -7.4713 -1.4487 35 1 2.8157 -5.7776 -1.9850 36 1 3.8486 -8.1900 -3.4901 37 1 3.9576 -6.4961 -4.0258 38 1 4.9648 -8.4347 -6.9907 39 1 1.6913 -4.6024 -0.0111 40 1 0.4623 -2.4882 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119265708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:21 Heat of formation + Delta-G solvation = -54.024545 kcal Electronic energy + Delta-G solvation = -20812.825461 eV Core-core repulsion = 17592.864439 eV Total energy + Delta-G solvation = -3219.961022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12994 -38.82281 -37.07548 -35.66943 -32.82027 -31.89342 -30.90284 -30.03181 -28.68744 -27.16854 -25.76974 -23.37828 -22.36479 -22.17830 -21.14433 -19.57204 -17.68797 -16.52071 -16.23042 -16.13016 -15.45997 -15.19741 -14.96170 -14.77495 -14.59618 -14.29139 -14.15883 -13.65901 -13.33520 -13.10296 -12.67646 -12.54658 -12.30829 -12.11763 -12.07982 -12.04410 -11.81252 -11.36344 -10.94820 -10.92766 -10.78946 -10.66423 -10.20629 -9.72808 -9.67636 -9.20066 -9.07533 -8.90854 -8.25845 -7.24948 -6.16898 -4.19391 0.88246 1.51979 2.53151 3.13233 3.27326 3.30736 3.33769 3.93009 4.17767 4.27665 4.64232 4.72597 4.92917 4.99468 5.12795 5.19605 5.25059 5.25719 5.35050 5.37236 5.46851 5.52238 5.64030 5.69733 5.80265 5.82951 5.86565 6.02881 6.10678 6.14390 6.27340 6.35423 6.53740 6.78593 7.01468 7.23466 7.35123 7.48180 7.62181 7.71490 8.07532 8.47809 8.92426 9.45679 10.94529 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.003367 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.440978 B = 8313.636014 C = 8505.324933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.401 3.599 3 O -0.482 6.482 4 C -0.257 4.257 5 C -0.005 4.005 6 C -0.219 4.219 7 C 0.264 3.736 8 N -0.602 5.602 9 C 0.092 3.908 10 C 0.120 3.880 11 C 0.041 3.959 12 O -0.391 6.391 13 C 0.197 3.803 14 C -0.517 4.517 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.221 4.221 23 C -0.018 4.018 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.004 0.996 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 9.099 14.765 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.282 3.718 3 O -0.360 6.360 4 C -0.260 4.260 5 C -0.024 4.024 6 C -0.242 4.242 7 C 0.155 3.845 8 N -0.306 5.306 9 C -0.050 4.050 10 C -0.003 4.003 11 C -0.038 4.038 12 O -0.311 6.311 13 C 0.123 3.877 14 C -0.555 4.555 15 H 0.083 0.917 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.735 3.265 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.244 4.244 23 C -0.037 4.037 24 H 0.111 0.889 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.075 0.925 39 H 0.145 0.855 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.817 9.368 14.666 18.690 hybrid contribution 0.459 -0.512 -0.815 1.067 sum -6.358 8.856 13.850 17.626 Atomic orbital electron populations 1.22225 0.94672 1.04560 1.04297 1.22242 0.91238 0.87828 0.70499 1.90511 1.72166 1.34612 1.38708 1.20074 0.94365 0.94258 1.17310 1.20832 0.93057 0.97731 0.90765 1.20444 1.00193 0.90837 1.12716 1.18218 0.91462 0.86104 0.88689 1.46522 1.06015 1.02932 1.75146 1.21771 0.78488 1.01832 1.02954 1.21700 0.97271 0.84783 0.96500 1.22756 0.89296 0.98538 0.93181 1.87835 1.26358 1.87858 1.29078 1.20175 0.97931 0.93389 0.76178 1.20978 0.92318 1.45495 0.96697 0.91696 1.24951 0.97602 0.95316 0.96571 1.69946 1.28579 1.46556 1.08562 0.86396 0.83388 0.78839 0.77855 1.20005 1.21100 1.19991 1.20423 0.92115 0.98943 1.12896 1.20888 0.99370 0.91075 0.92349 0.88903 0.89887 0.89684 0.85469 0.85400 0.91425 0.91857 0.91190 0.89618 0.89717 0.93591 0.94095 0.97823 0.97868 0.92525 0.85487 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.59 9.75 36.01 0.35 -1.24 16 2 C 0.40 4.86 7.21 -30.87 -0.22 4.64 16 3 O -0.48 -7.45 17.08 5.53 0.09 -7.36 16 4 C -0.26 -3.19 5.87 -105.05 -0.62 -3.81 16 5 C 0.00 -0.06 9.54 -39.49 -0.38 -0.44 16 6 C -0.22 -2.88 9.14 -39.79 -0.36 -3.25 16 7 C 0.26 3.56 6.55 -83.86 -0.55 3.01 16 8 N -0.60 -8.26 2.95 -179.60 -0.53 -8.79 16 9 C 0.09 1.20 9.81 59.85 0.59 1.79 16 10 C 0.12 1.56 5.58 -4.04 -0.02 1.54 16 11 C 0.04 0.70 6.28 37.16 0.23 0.93 16 12 O -0.39 -8.83 9.88 -35.23 -0.35 -9.17 16 13 C 0.20 5.28 5.69 36.01 0.20 5.48 16 14 C -0.52 -14.87 9.43 -34.44 -0.32 -15.19 16 15 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.91 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.22 -2.66 9.13 -39.79 -0.36 -3.02 16 23 C -0.02 -0.19 9.31 -39.49 -0.37 -0.56 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.54 6.45 -51.93 -0.34 0.20 16 27 H 0.13 1.61 7.64 -52.49 -0.40 1.21 16 28 H 0.13 1.52 6.11 -52.49 -0.32 1.20 16 29 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 30 H 0.06 0.68 6.16 -51.93 -0.32 0.36 16 31 H 0.07 0.84 7.89 -51.93 -0.41 0.43 16 32 H 0.09 0.87 6.18 -51.93 -0.32 0.55 16 33 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.13 1.33 6.11 -52.49 -0.32 1.01 16 40 H 0.13 0.98 6.34 -52.49 -0.33 0.65 16 LS Contribution 336.72 15.07 5.07 5.07 Total: -1.00 -33.08 336.72 -7.60 -40.68 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.67 Total: -2.49 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.93 Total: -8.59 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.21 Total: -34.65 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.25 Total: -16.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.08 -7.60 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119265708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.346 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds