Wall clock time and date at job start Mon Mar 30 2020 20:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38153 * 119.54852 * 2 1 4 4 C 1.39816 * 118.99974 * 179.97438 * 3 2 1 5 5 C 1.48151 * 120.92638 * 179.97438 * 4 3 2 6 6 O 1.21522 * 119.99506 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00406 * 179.72775 * 5 4 3 8 8 C 1.46498 * 120.00205 * 180.27453 * 7 5 4 9 9 C 1.52994 * 109.47193 * 180.02562 * 8 7 5 10 10 N 1.46507 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.46497 * 119.99676 * 89.99855 * 10 9 8 12 12 C 1.36938 * 120.00060 * 270.00134 * 10 9 8 13 13 H 1.08005 * 119.99707 * 23.04587 * 12 10 9 14 14 C 1.38809 * 120.00081 * 203.04473 * 12 10 9 15 15 N 1.31616 * 120.00156 * 12.92418 * 14 12 10 16 16 Si 1.86800 * 119.99871 * 192.92768 * 14 12 10 17 17 H 1.48506 * 109.46910 * 60.00247 * 16 14 12 18 18 H 1.48506 * 109.47060 * 179.97438 * 16 14 12 19 19 H 1.48488 * 109.47387 * 299.99678 * 16 14 12 20 20 C 1.39819 * 118.15326 * 0.25536 * 4 3 2 21 21 C 1.38149 * 119.00247 * 359.52239 * 20 4 3 22 22 C 1.50699 * 119.55131 * 180.22741 * 21 20 4 23 23 N 1.31807 * 119.55178 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47336 * 89.99638 * 1 2 3 25 25 H 1.08999 * 109.47073 * 210.00237 * 1 2 3 26 26 H 1.09007 * 109.47366 * 329.99802 * 1 2 3 27 27 H 1.07995 * 120.50384 * 0.02828 * 3 2 1 28 28 H 0.97001 * 119.99747 * 0.28044 * 7 5 4 29 29 H 1.09005 * 109.47262 * 299.99969 * 8 7 5 30 30 H 1.09000 * 109.47057 * 60.00022 * 8 7 5 31 31 H 1.08995 * 109.47404 * 299.99904 * 9 8 7 32 32 H 1.09004 * 109.47292 * 60.00760 * 9 8 7 33 33 H 1.09001 * 109.46747 * 95.12754 * 11 10 9 34 34 H 1.09005 * 109.46873 * 215.12093 * 11 10 9 35 35 H 1.08995 * 109.47370 * 335.12474 * 11 10 9 36 36 H 0.97000 * 120.00331 * 179.97438 * 15 14 12 37 37 H 1.08002 * 120.49766 * 179.72421 * 20 4 3 38 38 H 1.09004 * 109.47149 * 270.25621 * 22 21 20 39 39 H 1.08995 * 109.47223 * 30.25628 * 22 21 20 40 40 H 1.09002 * 109.46969 * 150.25344 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2018 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4520 0.0000 6 8 3.7795 3.5196 -0.0005 7 7 5.7072 2.4174 0.0061 8 6 6.4720 3.6669 0.0116 9 6 7.9685 3.3488 0.0173 10 7 8.7334 4.5983 0.0234 11 6 9.1104 5.2200 1.2952 12 6 9.0959 5.1850 -1.1596 13 1 8.5392 4.9728 -2.0604 14 6 10.1788 6.0525 -1.2009 15 7 11.0082 6.1189 -0.1811 16 14 10.4589 7.1257 -2.7040 17 1 9.2831 8.0097 -2.9070 18 1 11.6728 7.9564 -2.4998 19 1 10.6433 6.2646 -3.8996 20 6 4.2343 -0.0506 -0.0044 21 6 3.4740 -1.2040 0.0004 22 6 4.1595 -2.5461 0.0004 23 7 2.1571 -1.1466 -0.0005 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6492 2.1376 0.0005 28 1 6.1704 1.5652 0.0067 29 1 6.2275 4.2465 -0.8786 30 1 6.2194 4.2435 0.9014 31 1 8.2134 2.7690 0.9072 32 1 8.2209 2.7724 -0.8728 33 1 10.1185 4.9077 1.5676 34 1 9.0815 6.3048 1.1920 35 1 8.4117 4.9102 2.0723 36 1 11.7651 6.7248 -0.2101 37 1 5.3129 -0.1051 -0.0087 38 1 4.3251 -2.8694 -1.0273 39 1 5.1171 -2.4649 0.5145 40 1 3.5320 -3.2746 0.5139 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663192339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:22 Heat of formation + Delta-G solvation = 13.754783 kcal Electronic energy + Delta-G solvation = -20599.117541 eV Core-core repulsion = 17414.388402 eV Total energy + Delta-G solvation = -3184.729138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85577 -39.12693 -36.14531 -34.48879 -33.88835 -33.06050 -31.30944 -29.37804 -28.33202 -26.92753 -25.90332 -24.60250 -22.82179 -22.08623 -20.77054 -20.05481 -17.65002 -16.95241 -16.72374 -15.84207 -15.47963 -15.40874 -14.84241 -14.82138 -14.57653 -13.75627 -13.72026 -13.54543 -13.39438 -13.24316 -12.69352 -12.57780 -12.41119 -12.38434 -12.13707 -11.91125 -11.22653 -10.95105 -10.86835 -10.66081 -10.41221 -10.25715 -10.02763 -10.00741 -9.93402 -9.64241 -9.05825 -8.84285 -8.59410 -6.83988 -5.77518 -3.26083 0.55329 0.80962 2.84257 3.15048 3.37518 3.42744 3.44696 3.61516 3.87125 4.31496 4.43853 4.51785 4.74756 4.78483 5.06125 5.19832 5.23722 5.27951 5.34155 5.34431 5.36902 5.56972 5.64252 5.72746 5.76100 5.79797 5.81789 5.91575 6.18632 6.38136 6.47280 6.57492 6.71115 6.80036 7.32710 7.56574 7.67482 7.69786 7.76477 8.22218 8.34306 9.17533 9.79682 10.27617 11.27307 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029627 B = 0.003092 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.854567 B = 9053.011292 C = 9351.664497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.127 3.873 3 C -0.124 4.124 4 C -0.073 4.073 5 C 0.550 3.450 6 O -0.532 6.532 7 N -0.713 5.713 8 C 0.093 3.907 9 C 0.144 3.856 10 N -0.596 5.596 11 C 0.160 3.840 12 C -0.263 4.263 13 H 0.069 0.931 14 C 0.005 3.995 15 N -0.906 5.906 16 Si 0.907 3.093 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.282 1.282 20 C -0.150 4.150 21 C 0.129 3.871 22 C -0.104 4.104 23 N -0.474 5.474 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.397 0.603 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.042 0.958 35 H -0.001 1.001 36 H 0.254 0.746 37 H 0.140 0.860 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.489 -15.902 1.889 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.010 4.010 3 C -0.145 4.145 4 C -0.084 4.084 5 C 0.335 3.665 6 O -0.409 6.409 7 N -0.364 5.364 8 C -0.033 4.033 9 C 0.015 3.985 10 N -0.319 5.319 11 C 0.016 3.984 12 C -0.392 4.392 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.550 5.550 16 Si 0.736 3.264 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.208 1.208 20 C -0.170 4.170 21 C -0.009 4.009 22 C -0.161 4.161 23 N -0.186 5.186 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.232 0.768 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.018 0.982 36 H 0.064 0.936 37 H 0.158 0.842 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.131 -15.724 1.931 22.610 hybrid contribution 0.995 1.118 -0.805 1.699 sum -15.136 -14.606 1.126 21.064 Atomic orbital electron populations 1.20727 0.88276 1.03691 1.03332 1.21264 0.97210 0.87681 0.94873 1.22106 0.93358 1.00059 0.98983 1.20502 0.94558 0.93687 0.99680 1.18178 0.82620 0.88187 0.77497 1.90785 1.69899 1.30745 1.49458 1.46014 1.05562 1.11145 1.73654 1.22543 0.93975 0.84382 1.02380 1.20837 0.88232 0.89770 0.99686 1.43773 1.62021 1.22441 1.03671 1.20851 0.96218 0.97281 0.84069 1.19149 1.09092 1.23180 0.87792 0.91359 1.25030 0.95571 1.01086 0.97677 1.70057 1.14831 1.39187 1.30973 0.86307 0.77256 0.80475 0.82332 1.20939 1.21557 1.20844 1.22161 1.01416 0.92048 1.01411 1.21225 0.89188 0.95716 0.94783 1.20739 0.99921 0.92101 1.03370 1.67218 1.09661 1.29580 1.12136 0.90187 0.90311 0.90388 0.83514 0.76844 0.91219 0.91891 0.94010 0.92850 0.94798 0.93888 0.98241 0.93580 0.84221 0.90153 0.90351 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.00 0.37 -0.41 16 2 C 0.13 1.38 6.78 -82.63 -0.56 0.82 16 3 C -0.12 -1.49 9.31 -39.02 -0.36 -1.85 16 4 C -0.07 -0.93 5.91 -104.65 -0.62 -1.55 16 5 C 0.55 8.58 7.80 -12.19 -0.10 8.48 16 6 O -0.53 -10.29 16.45 5.35 0.09 -10.21 16 7 N -0.71 -10.29 5.51 -61.15 -0.34 -10.63 16 8 C 0.09 1.67 6.00 -4.05 -0.02 1.65 16 9 C 0.14 2.77 5.76 -4.04 -0.02 2.75 16 10 N -0.60 -14.78 2.92 -181.12 -0.53 -15.31 16 11 C 0.16 3.92 8.98 59.85 0.54 4.45 16 12 C -0.26 -7.17 9.65 -15.06 -0.15 -7.31 16 13 H 0.07 1.82 7.86 -52.48 -0.41 1.41 16 14 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 15 N -0.91 -26.23 10.71 55.49 0.59 -25.63 16 16 Si 0.91 21.81 29.57 -169.99 -5.03 16.78 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.15 -1.55 9.24 -39.02 -0.36 -1.91 16 21 C 0.13 1.31 6.78 -82.63 -0.56 0.75 16 22 C -0.10 -0.72 10.16 36.01 0.37 -0.35 16 23 N -0.47 -5.43 10.16 -5.79 -0.06 -5.48 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.15 1.70 7.74 -52.49 -0.41 1.29 16 28 H 0.40 4.43 6.62 -40.82 -0.27 4.16 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 33 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 34 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 35 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.14 1.08 6.54 -52.49 -0.34 0.74 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.18 15.07 5.11 5.11 Total: -1.00 -33.01 339.18 -7.69 -40.70 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.96 Total: -0.90 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.57 Total: 5.57 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.33 Total: -57.06 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.01 -7.69 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663192339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.453 kcal (2) G-P(sol) polarization free energy of solvation -33.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds