Wall clock time and date at job start Mon Mar 30 2020 20:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46829 * 2 1 4 4 C 1.50694 * 120.00118 * 274.99175 * 3 2 1 5 5 C 1.33026 * 119.99898 * 95.00119 * 3 2 1 6 6 C 1.47059 * 120.00126 * 172.83812 * 5 3 2 7 7 O 1.21636 * 119.99598 * 354.00410 * 6 5 3 8 8 N 1.34779 * 120.00169 * 174.27911 * 6 5 3 9 9 C 1.39359 * 119.99955 * 179.72337 * 8 6 5 10 10 C 1.36148 * 126.26389 * 359.69232 * 9 8 6 11 11 C 1.39734 * 107.85862 * 179.88029 * 10 9 8 12 12 C 1.50697 * 125.77562 * 180.11175 * 11 10 9 13 13 N 1.30826 * 108.44245 * 0.38519 * 11 10 9 14 14 N 1.35805 * 126.26427 * 179.97438 * 9 8 6 15 15 C 1.46507 * 126.09483 * 359.97438 * 14 9 8 16 16 C 1.50704 * 109.46985 * 89.99477 * 15 14 9 17 17 H 1.08004 * 119.99972 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00490 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99917 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47065 * 90.00286 * 20 18 16 22 22 H 1.48499 * 109.46934 * 210.00120 * 20 18 16 23 23 H 1.48498 * 109.47304 * 330.00215 * 20 18 16 24 24 H 1.08993 * 109.47824 * 300.00451 * 1 2 3 25 25 H 1.09007 * 109.46678 * 60.00417 * 1 2 3 26 26 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47784 * 240.00034 * 2 1 3 28 28 H 1.08998 * 109.46898 * 119.99574 * 2 1 3 29 29 H 1.08995 * 109.47674 * 264.38837 * 4 3 2 30 30 H 1.09000 * 109.47373 * 24.39820 * 4 3 2 31 31 H 1.09002 * 109.47314 * 144.39293 * 4 3 2 32 32 H 1.07997 * 119.99854 * 352.82830 * 5 3 2 33 33 H 0.96999 * 119.99356 * 359.71904 * 8 6 5 34 34 H 1.08004 * 126.07693 * 359.97438 * 10 9 8 35 35 H 1.08994 * 109.47524 * 270.29013 * 12 11 10 36 36 H 1.09002 * 109.47551 * 30.29966 * 12 11 10 37 37 H 1.09005 * 109.47319 * 150.29561 * 12 11 10 38 38 H 1.08999 * 109.47341 * 209.99549 * 15 14 9 39 39 H 1.08998 * 109.46874 * 329.99633 * 15 14 9 40 40 H 0.96994 * 120.00662 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.1763 2.1691 -1.3001 5 6 2.3486 2.0144 1.1477 6 6 2.9854 3.3400 1.1388 7 8 3.3221 3.8458 0.0851 8 7 3.2010 3.9918 2.2986 9 6 3.8096 5.2454 2.2907 10 6 4.2408 5.9244 1.1921 11 6 4.7855 7.1365 1.6239 12 6 5.3800 8.2006 0.7378 13 7 4.6973 7.1886 2.9282 14 7 4.0862 6.0111 3.3777 15 6 3.7970 5.6668 4.7721 16 6 4.9720 4.9301 5.3617 17 1 5.8469 4.7379 4.7582 18 6 4.9302 4.5014 6.6714 19 7 5.9558 3.8589 7.1861 20 14 3.4173 4.8344 7.7153 21 1 2.4617 3.7062 7.5760 22 1 3.8182 4.9707 9.1386 23 1 2.7692 6.0909 7.2610 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.2047 2.0906 -1.6525 30 1 1.5038 1.7399 -2.0428 31 1 1.9245 3.2183 -1.1453 32 1 2.1376 1.5230 2.0859 33 1 2.9323 3.5883 3.1388 34 1 4.1725 5.5868 0.1685 35 1 6.4448 8.0096 0.6048 36 1 4.8838 8.1844 -0.2326 37 1 5.2413 9.1779 1.2004 38 1 3.6168 6.5785 5.3416 39 1 2.9121 5.0318 4.8134 40 1 5.9265 3.5576 8.1076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822701621.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:20:07 Heat of formation + Delta-G solvation = 48.975397 kcal Electronic energy + Delta-G solvation = -21226.182960 eV Core-core repulsion = 18042.981102 eV Total energy + Delta-G solvation = -3183.201858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85939 -39.38584 -36.40017 -34.69311 -33.72270 -32.13709 -31.17560 -29.54559 -28.72519 -27.35005 -26.26670 -24.39647 -22.61175 -21.76904 -19.91978 -19.50913 -18.23060 -17.18280 -16.75124 -16.53013 -15.26403 -15.14767 -14.69101 -14.52659 -14.34398 -13.93666 -13.72120 -13.23747 -13.09464 -12.74413 -12.68915 -12.57740 -12.32907 -12.26399 -11.88755 -11.83141 -11.75753 -11.54903 -11.14552 -11.09738 -10.81261 -10.42594 -10.19452 -9.84491 -9.73971 -9.32331 -9.21982 -8.85450 -7.90544 -7.43045 -6.32451 -4.36684 1.25175 2.59231 2.86733 3.07382 3.17857 3.18783 3.33192 3.70583 3.75895 4.15026 4.50298 4.65212 4.93873 4.99457 5.03840 5.07629 5.32324 5.33846 5.48808 5.60763 5.64142 5.67813 5.76447 5.92342 5.98285 6.03392 6.05575 6.18045 6.26372 6.31655 6.37837 6.45086 6.51116 6.70329 6.78338 7.21617 7.48767 7.62468 7.81944 8.21768 8.38337 8.60318 8.74260 9.22319 10.79890 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.005557 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.754954 B = 5037.283362 C = 6829.032020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.025 4.025 4 C -0.126 4.126 5 C -0.226 4.226 6 C 0.552 3.448 7 O -0.516 6.516 8 N -0.638 5.638 9 C 0.306 3.694 10 C -0.292 4.292 11 C 0.053 3.947 12 C -0.062 4.062 13 N -0.283 5.283 14 N -0.347 5.347 15 C 0.231 3.769 16 C -0.545 4.545 17 H 0.081 0.919 18 C 0.080 3.920 19 N -0.884 5.884 20 Si 0.871 3.129 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.263 1.263 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.130 0.870 33 H 0.415 0.585 34 H 0.164 0.836 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 -5.363 -13.636 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.135 4.135 3 C -0.027 4.027 4 C -0.181 4.181 5 C -0.247 4.247 6 C 0.343 3.657 7 O -0.393 6.393 8 N -0.283 5.283 9 C 0.084 3.916 10 C -0.323 4.323 11 C -0.112 4.112 12 C -0.121 4.121 13 N -0.108 5.108 14 N -0.133 5.133 15 C 0.112 3.888 16 C -0.583 4.583 17 H 0.099 0.901 18 C -0.124 4.124 19 N -0.520 5.520 20 Si 0.697 3.303 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.148 0.852 33 H 0.251 0.749 34 H 0.181 0.819 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.271 -4.491 -13.003 17.168 hybrid contribution -0.898 -0.807 0.885 1.497 sum -11.170 -5.299 -12.118 17.312 Atomic orbital electron populations 1.21728 0.94243 1.02028 1.02489 1.20774 0.96635 0.92547 1.03522 1.22535 0.90130 0.94750 0.95316 1.21167 1.02420 1.01342 0.93222 1.22243 1.07381 0.95677 0.99393 1.18466 0.79257 0.85390 0.82625 1.90686 1.50361 1.68012 1.30275 1.42701 1.58636 1.16095 1.10897 1.18050 0.98761 0.85469 0.89322 1.21279 1.15228 0.96800 0.99034 1.22039 1.00473 0.96640 0.92028 1.20028 1.00052 0.95201 0.96830 1.77323 1.18733 1.03315 1.11444 1.49032 1.45758 1.12375 1.06125 1.19916 0.97232 0.97457 0.74242 1.21207 1.02115 1.36905 0.98071 0.90080 1.24819 0.96338 0.94160 0.97123 1.69870 1.29962 1.37112 1.15089 0.86924 0.83178 0.79490 0.80692 1.19677 1.20346 1.18750 0.92276 0.92356 0.92147 0.90258 0.90477 0.90111 0.92745 0.89093 0.85216 0.74908 0.81913 0.91193 0.91105 0.91553 0.92793 0.94782 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.66 16 2 C -0.10 -0.77 6.08 -27.88 -0.17 -0.94 16 3 C -0.03 -0.27 5.36 -101.16 -0.54 -0.81 16 4 C -0.13 -1.37 8.48 36.00 0.31 -1.06 16 5 C -0.23 -2.78 9.60 -37.82 -0.36 -3.14 16 6 C 0.55 8.91 7.58 -12.68 -0.10 8.81 16 7 O -0.52 -9.16 10.41 5.25 0.05 -9.10 16 8 N -0.64 -11.39 5.41 -12.43 -0.07 -11.46 16 9 C 0.31 6.52 7.68 -152.77 -1.17 5.35 16 10 C -0.29 -6.02 9.58 -39.77 -0.38 -6.40 16 11 C 0.05 1.09 7.20 -82.46 -0.59 0.49 16 12 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 13 N -0.28 -6.64 12.56 33.64 0.42 -6.21 16 14 N -0.35 -8.15 3.62 -61.45 -0.22 -8.38 16 15 C 0.23 5.51 5.09 -5.19 -0.03 5.49 16 16 C -0.54 -15.12 9.94 -34.44 -0.34 -15.46 16 17 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.88 -25.94 13.96 55.43 0.77 -25.17 16 20 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 29 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 30 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.09 1.18 6.14 -51.93 -0.32 0.86 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.41 6.76 7.98 -40.82 -0.33 6.43 16 34 H 0.16 3.23 5.82 -52.48 -0.31 2.92 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.31 7.20 -51.93 -0.37 0.93 16 39 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -32.56 336.24 -7.29 -39.85 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.91 Total: 7.13 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.74 Total: -6.77 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.91 Total: -51.21 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.05 Total: -9.10 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.56 -7.29 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822701621.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.822 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds