Wall clock time and date at job start Mon Mar 30 2020 20:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47523 * 2 1 4 4 C 1.53000 * 109.47051 * 119.99906 * 2 1 3 5 5 C 1.52994 * 109.47221 * 174.50112 * 4 2 1 6 6 H 1.08997 * 109.47039 * 56.33599 * 5 4 2 7 7 N 1.46903 * 109.47410 * 296.33337 * 5 4 2 8 8 C 1.50705 * 109.47209 * 176.33722 * 5 4 2 9 9 O 1.21274 * 120.00119 * 100.00191 * 8 5 4 10 10 N 1.34771 * 119.99794 * 279.99946 * 8 5 4 11 11 C 1.39274 * 119.99974 * 185.52751 * 10 8 5 12 12 C 1.39667 * 119.57337 * 19.38439 * 11 10 8 13 13 C 1.38661 * 119.49659 * 180.02562 * 12 11 10 14 14 C 1.38342 * 118.66667 * 0.02562 * 13 12 11 15 15 C 1.40582 * 119.13125 * 359.97438 * 14 13 12 16 16 C 1.41338 * 119.78548 * 180.02562 * 15 14 13 17 17 H 1.07992 * 120.00494 * 5.84515 * 16 15 14 18 18 C 1.40034 * 119.99498 * 185.85636 * 16 15 14 19 19 N 1.30741 * 120.00436 * 5.85524 * 18 16 15 20 20 Si 1.86801 * 119.99669 * 185.86620 * 18 16 15 21 21 H 1.48504 * 109.47058 * 264.99934 * 20 18 16 22 22 H 1.48496 * 109.47309 * 24.99672 * 20 18 16 23 23 H 1.48494 * 109.47302 * 144.99998 * 20 18 16 24 24 N 1.31905 * 119.57553 * 199.68904 * 11 10 8 25 25 H 1.09003 * 109.47402 * 64.90729 * 1 2 3 26 26 H 1.09001 * 109.47845 * 184.90991 * 1 2 3 27 27 H 1.09004 * 109.47452 * 304.91101 * 1 2 3 28 28 H 1.09001 * 109.46789 * 239.99447 * 2 1 3 29 29 H 1.08995 * 109.46656 * 179.97438 * 3 2 1 30 30 H 1.09003 * 109.46573 * 300.00172 * 3 2 1 31 31 H 1.08997 * 109.46848 * 59.99718 * 3 2 1 32 32 H 1.09001 * 109.47232 * 54.50245 * 4 2 1 33 33 H 1.08997 * 109.47241 * 294.50490 * 4 2 1 34 34 H 1.00898 * 111.00173 * 176.04070 * 7 5 4 35 35 H 1.00898 * 110.99999 * 300.00459 * 7 5 4 36 36 H 0.97003 * 120.00166 * 5.52810 * 10 8 5 37 37 H 1.08003 * 120.25447 * 0.04831 * 12 11 10 38 38 H 1.07994 * 120.66691 * 179.97438 * 13 12 11 39 39 H 1.08003 * 120.43471 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00008 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5636 -0.8421 1.1821 6 1 4.0019 0.1491 1.0660 7 7 3.9383 -1.6806 0.0356 8 6 4.0741 -1.4714 2.4527 9 8 4.3572 -2.6504 2.4742 10 7 4.2161 -0.7239 3.5651 11 6 4.7950 -1.2754 4.7055 12 6 5.5807 -2.4246 4.5927 13 6 6.1559 -2.9726 5.7292 14 6 5.9310 -2.3591 6.9486 15 6 5.1306 -1.2044 6.9964 16 6 4.8922 -0.5661 8.2347 17 1 5.3990 -0.9081 9.1249 18 6 3.9987 0.5097 8.3073 19 7 3.2994 0.8507 7.2566 20 14 3.8063 1.4577 9.9053 21 1 2.6565 0.9109 10.6699 22 1 5.0456 1.3243 10.7124 23 1 3.5635 2.8914 9.6042 24 7 4.5893 -0.7091 5.8789 25 1 -0.3634 0.4358 -0.9307 26 1 -0.3635 -1.0239 0.0880 27 1 -0.3634 0.5881 0.8427 28 1 1.8932 -0.5139 -0.8900 29 1 3.1300 1.4423 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.5984 -1.7165 1.2999 33 1 1.7592 -0.1537 2.1365 34 1 4.9410 -1.7232 -0.0689 35 1 3.5438 -2.6054 0.1197 36 1 3.9151 0.1982 3.5715 37 1 5.7394 -2.8827 3.6277 38 1 6.7664 -3.8610 5.6639 39 1 6.3654 -2.7614 7.8518 40 1 2.6807 1.5961 7.3069 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337077607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:18:40 Heat of formation + Delta-G solvation = -13.175766 kcal Electronic energy + Delta-G solvation = -21421.085707 eV Core-core repulsion = 18235.188772 eV Total energy + Delta-G solvation = -3185.896935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.13040 -38.05083 -36.76995 -34.40409 -33.44323 -33.25703 -30.46344 -29.45331 -28.02850 -27.20194 -25.62778 -24.20834 -21.68063 -21.40493 -19.94507 -19.62466 -17.62706 -17.22733 -16.58881 -15.99719 -15.04340 -14.80609 -14.67870 -14.49373 -14.32899 -14.09869 -13.61879 -13.45780 -12.89944 -12.53008 -12.38020 -12.18631 -12.02856 -11.92377 -11.61992 -11.30283 -11.20437 -11.01017 -10.71999 -10.68314 -10.62672 -10.59434 -10.18731 -9.88814 -9.56744 -9.21718 -8.58349 -8.10264 -7.72143 -7.15370 -6.49555 -4.54184 2.41019 2.85393 3.06406 3.09894 3.18191 3.29362 3.57535 3.91911 4.46743 4.70433 4.77217 4.88577 4.92695 5.13842 5.20552 5.37833 5.59233 5.72670 5.74103 5.84811 5.86939 5.91535 5.96225 6.11520 6.14169 6.29668 6.38046 6.45214 6.71391 6.75247 6.78415 6.95720 7.09701 7.34591 7.42996 7.46419 7.80514 7.84117 8.08328 8.24011 8.58605 8.67106 8.92055 9.99261 10.26701 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.004779 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.321039 B = 5857.610087 C = 7181.350421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.103 4.103 5 C 0.077 3.923 6 H 0.105 0.895 7 N -0.816 5.816 8 C 0.478 3.522 9 O -0.528 6.528 10 N -0.641 5.641 11 C 0.354 3.646 12 C -0.313 4.313 13 C -0.050 4.050 14 C -0.288 4.288 15 C 0.280 3.720 16 C -0.436 4.436 17 H 0.086 0.914 18 C 0.073 3.927 19 N -0.724 5.724 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.261 1.261 23 H -0.276 1.276 24 N -0.507 5.507 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.344 0.656 35 H 0.349 0.651 36 H 0.407 0.593 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 2.290 -11.505 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.207 4.207 4 C -0.141 4.141 5 C -0.039 4.039 6 H 0.123 0.877 7 N -0.345 5.345 8 C 0.262 3.738 9 O -0.404 6.404 10 N -0.286 5.286 11 C 0.119 3.881 12 C -0.337 4.337 13 C -0.074 4.074 14 C -0.311 4.311 15 C 0.153 3.847 16 C -0.468 4.468 17 H 0.104 0.896 18 C -0.152 4.152 19 N -0.345 5.345 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.185 1.185 23 H -0.201 1.201 24 N -0.226 5.226 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.242 0.758 37 H 0.145 0.855 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.246 2.886 -11.992 13.045 hybrid contribution 0.724 -0.465 1.557 1.779 sum -3.522 2.421 -10.435 11.276 Atomic orbital electron populations 1.21865 0.95647 1.01628 1.01494 1.21009 0.94895 0.96099 0.98604 1.21899 1.01238 0.96034 1.01493 1.21620 0.91829 1.01632 0.99036 1.21630 0.97648 0.98370 0.86237 0.87749 1.59185 1.16959 1.19100 1.39259 1.22063 0.78340 0.87417 0.85988 1.90615 1.49543 1.15733 1.84555 1.43353 1.58624 1.15826 1.10759 1.18562 0.91202 0.91489 0.86864 1.21534 1.09695 1.02733 0.99775 1.20808 0.96577 0.97202 0.92862 1.21721 1.10799 1.01813 0.96771 1.18180 0.87490 0.88313 0.90700 1.19569 1.21273 1.12128 0.93821 0.89637 1.26028 0.94513 0.97024 0.97611 1.70074 1.14816 1.20973 1.28683 0.86324 0.79668 0.78903 0.81987 1.19546 1.18457 1.20087 1.68028 1.25557 1.33478 0.95502 0.92885 0.92841 0.92800 0.89652 0.92429 0.92982 0.92781 0.91376 0.90842 0.84398 0.83723 0.75790 0.85480 0.88356 0.88192 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 37.15 0.34 -1.04 16 2 C -0.09 -0.87 2.86 -90.62 -0.26 -1.13 16 3 C -0.15 -1.39 8.96 37.16 0.33 -1.06 16 4 C -0.10 -1.21 4.31 -26.73 -0.12 -1.32 16 5 C 0.08 0.97 3.01 -68.86 -0.21 0.76 16 6 H 0.10 1.18 6.42 -51.93 -0.33 0.85 16 7 N -0.82 -9.28 8.29 -5.65 -0.05 -9.33 16 8 C 0.48 8.38 6.91 -10.99 -0.08 8.30 16 9 O -0.53 -10.88 13.07 5.56 0.07 -10.81 16 10 N -0.64 -12.71 5.41 -11.40 -0.06 -12.77 16 11 C 0.35 8.77 7.50 -154.97 -1.16 7.60 16 12 C -0.31 -7.67 8.82 -38.89 -0.34 -8.02 16 13 C -0.05 -1.19 10.15 -39.39 -0.40 -1.59 16 14 C -0.29 -7.29 9.83 -38.66 -0.38 -7.67 16 15 C 0.28 7.71 6.53 -85.00 -0.56 7.16 16 16 C -0.44 -11.63 9.13 -37.73 -0.34 -11.97 16 17 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16 18 C 0.07 1.83 5.48 -17.34 -0.10 1.74 16 19 N -0.72 -18.73 11.52 55.55 0.64 -18.09 16 20 Si 0.91 18.34 29.56 -169.99 -5.03 13.31 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 24 N -0.51 -13.82 7.96 -10.25 -0.08 -13.90 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.88 7.56 -51.93 -0.39 0.49 16 29 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.34 3.77 9.06 -39.29 -0.36 3.41 16 35 H 0.35 4.16 8.58 -39.29 -0.34 3.83 16 36 H 0.41 7.25 8.83 -40.82 -0.36 6.89 16 37 H 0.13 3.06 5.37 -52.49 -0.28 2.78 16 38 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.10 2.32 8.06 -52.48 -0.42 1.89 16 40 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -30.29 331.41 -8.52 -38.82 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -5.75 Total: 16.01 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.26 Total: -8.23 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.45 Total: -54.09 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.29 -8.52 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.640 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds